A comprehensive catalogue of the coding and non-coding transcripts of the human inner ear

[1]  D. Corey,et al.  Gene Expression by Mouse Inner Ear Hair Cells during Development , 2015, The Journal of Neuroscience.

[2]  E. Eskin,et al.  Genome-Wide Association Study Identifies Nox3 as a Critical Gene for Susceptibility to Noise-Induced Hearing Loss , 2015, PLoS genetics.

[3]  Umberto Ambrosetti,et al.  Genome-wide association analysis demonstrates the highly polygenic character of age-related hearing impairment , 2014, European Journal of Human Genetics.

[4]  W. Huber,et al.  Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2 , 2014, Genome Biology.

[5]  Paul Theodor Pyl,et al.  HTSeq—a Python framework to work with high-throughput sequencing data , 2014, bioRxiv.

[6]  Ofer Isakov,et al.  Next-generation sequencing of small RNAs from inner ear sensory epithelium identifies microRNAs and defines regulatory pathways , 2014, BMC Genomics.

[7]  E. Eskin,et al.  Allele-specific expression and eQTL analysis in mouse adipose tissue , 2014, BMC Genomics.

[8]  Y. Takumi,et al.  Deafness Gene Expression Patterns in the Mouse Cochlea Found by Microarray Analysis , 2014, PloS one.

[9]  K. Avraham,et al.  MicroRNAs in sensorineural diseases of the ear , 2013, Front. Mol. Neurosci..

[10]  Pedro G. Ferreira,et al.  Transcriptome and genome sequencing uncovers functional variation in humans , 2013, Nature.

[11]  T. Friedman,et al.  A null mutation of mouse Kcna10 causes significant vestibular and mild hearing dysfunction , 2013, Hearing Research.

[12]  P. Bovolenta,et al.  Non-coding RNAs in the development of sensory organs and related diseases , 2013, Cellular and Molecular Life Sciences.

[13]  G. Gisselmann,et al.  Expression Profile of Ectopic Olfactory Receptors Determined by Deep Sequencing , 2013, PloS one.

[14]  Thomas R. Gingeras,et al.  STAR: ultrafast universal RNA-seq aligner , 2013, Bioinform..

[15]  S. Rombauts,et al.  Analysis of RNA-Seq data with TopHat and Cufflinks for genome-wide expression analysis of jasmonate-treated plants and plant cultures. , 2013, Methods in molecular biology.

[16]  Akira Inagaki,et al.  A mutation in CABP2, expressed in cochlear hair cells, causes autosomal-recessive hearing impairment. , 2012, American journal of human genetics.

[17]  Data production leads,et al.  An integrated encyclopedia of DNA elements in the human genome , 2012 .

[18]  Raymond K. Auerbach,et al.  An Integrated Encyclopedia of DNA Elements in the Human Genome , 2012, Nature.

[19]  ENCODEConsortium,et al.  An Integrated Encyclopedia of DNA Elements in the Human Genome , 2012, Nature.

[20]  R. Tibshirani,et al.  Normalization, testing, and false discovery rate estimation for RNA-sequencing data. , 2012, Biostatistics.

[21]  S. Dhanasekaran,et al.  Expressed Pseudogenes in the Transcriptional Landscape of Human Cancers , 2012, Cell.

[22]  W. Huber,et al.  Detecting differential usage of exons from RNA-seq data , 2012, Genome research.

[23]  R. Elkon,et al.  High throughput gene expression analysis of the inner ear , 2012, Hearing Research.

[24]  David R. Kelley,et al.  Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks , 2012, Nature Protocols.

[25]  Roman Valls Guimera,et al.  bcbio-nextgen: Automated, distributed next-gen sequencing pipeline , 2012 .

[26]  V. Abraira,et al.  Mutation of Rubie, a Novel Long Non-Coding RNA Located Upstream of Bmp4, Causes Vestibular Malformation in Mice , 2012, PloS one.

[27]  M. Esteller.  Non-coding RNAs in human disease , 2011, Nature Reviews Genetics.

[28]  T. Walsh,et al.  Targeted genomic capture and massively parallel sequencing to identify genes for hereditary hearing loss in middle eastern families , 2011, Genome Biology.

[29]  Marcel Martin.  Cutadapt removes adapter sequences from high-throughput sequencing reads , 2011 .

[30]  Li Yang,et al.  Genomewide characterization of non-polyadenylated RNAs , 2011, Genome Biology.

[31]  H. Simon,et al.  Parkinson's disease candidate gene prioritization based on expression profile of midbrain dopaminergic neurons , 2010, Journal of Biomedical Science.

[32]  E. Yamoah,et al.  Otoconin-90 deletion leads to imbalance but normal hearing: A comparison with other otoconia mutants , 2008, Neuroscience.

[33]  H. Dahl,et al.  Molecular characterization and expression of maternally expressed gene 3 (Meg3/Gtl2) RNA in the mouse inner ear , 2006, Journal of neuroscience research.

[34]  Joe C. Adams,et al.  Osteoprotegrin Knockout Mice Demonstrate Abnormal Remodeling of the Otic Capsule and Progressive Hearing Loss , 2006, The Laryngoscope.

[35]  U. Heinzmann,et al.  Vestibular defects in head-tilt mice result from mutations in Nox3, encoding an NADPH oxidase. , 2004, Genes & development.

[36]  Yusuke Nakamura,et al.  Identification of CRYM as a candidate responsible for nonsyndromic deafness, through cDNA microarray analysis of human cochlear and vestibular tissues. , 2003, American journal of human genetics.

[37]  J. Szustakowski,et al.  Gene Discovery in the Auditory System: Characterization of Additional Cochlear-Expressed Sequences , 2002, Journal of the Association for Research in Otolaryngology.

[38]  K Takahashi,et al.  Microphthalmia-associated transcription factor (MITF): multiplicity in structure, function, and regulation. , 2001, The journal of investigative dermatology. Symposium proceedings.

[39]  M. Cohen-Salmon,et al.  Spatiotemporal expression of otogelin in the developing and adult mouse inner ear , 2001, Hearing Research.

[40]  C. Petit,et al.  Twister mutant mice are defective for otogelin, a component specific to inner ear acellular membranes , 2000, Mammalian Genome.

[41]  A. Mansour,et al.  A defect in harmonin, a PDZ domain-containing protein expressed in the inner ear sensory hair cells, underlies Usher syndrome type 1C , 2000, Nature Genetics.

[42]  A. Hudspeth,et al.  A novel conserved cochlear gene, OTOR: identification, expression analysis, and chromosomal mapping. , 2000, Genomics.

[43]  C. Morton,et al.  Human cochlear expressed sequence tags provide insight into cochlear gene expression and identify candidate genes for deafness. , 1999, Human molecular genetics.

[44]  Karen P. Steel,et al.  The mouse Snell's waltzer deafness gene encodes an unconventional myosin required for structural integrity of inner ear hair cells , 1995, Nature Genetics.