Hematopoietic-specific heterozygous loss of Dnmt3a exacerbates colitis-associated colon cancer

Clonal hematopoiesis (CH) is defined as clonal expansion of mutant hematopoietic stem cells absent diagnosis of a hematologic malignancy. Presence of CH in solid tumor patients, including colon cancer, correlates with shorter survival. We hypothesized that bone marrow-derived cells with heterozygous loss-of-function mutations of DNMT3A, the most common genetic alteration in CH, contribute to the pathogenesis of colon cancer. In a mouse model that combines colitis-associated colon cancer with experimental CH driven by Dnmt3a+/Δ, we found higher tumor penetrance and increased tumor burden compared to controls. Histopathological analysis revealed accentuated colonic epithelium injury, dysplasia and adenocarcinoma formation. Transcriptome profiling of colon tumors identified enrichment of gene signatures associated with carcinogenesis, including angiogenesis. Treatment with the angiogenesis inhibitor axitinib eliminated the colon tumor-promoting effect of experimental CH driven by Dnmt3a haploinsufficiency. This study provides conceptually novel insights into non-tumor-cell-autonomous effect of hematopoietic alterations on colon carcinogenesis and identifies potential therapeutic strategies. SUMMARY A pre-clinical mouse model demonstrates that genetic alterations in the blood system characteristic of clonal hematopoiesis (CH) contribute to an aggressive solid tumor phenotype. It further identifies cancer angiogenesis as a potential therapeutic target to mitigate adverse CH effects.

[1]  D. Neuberg,et al.  TET2-mutant clonal hematopoiesis and risk of gout , 2022, Blood.

[2]  Emily F. Calderbank,et al.  Clonal dynamics of haematopoiesis across the human lifespan , 2021, Nature.

[3]  D. Christiani,et al.  Clonal Hematopoiesis Mutations in Patients with Lung Cancer Are Associated with Lung Cancer Risk Factors , 2021, Cancer Research.

[4]  Shannon K. Boi,et al.  Deleting DNMT3A in CAR T cells prevents exhaustion and enhances antitumor activity , 2021, Science Translational Medicine.

[5]  David M. Evans,et al.  Dnmt3a-mutated clonal hematopoiesis promotes osteoporosis , 2021, The Journal of experimental medicine.

[6]  Sina A. Gharib,et al.  Association of clonal hematopoiesis with chronic obstructive pulmonary disease , 2021, Blood.

[7]  W. Tapper,et al.  Clonal myelopoiesis promotes adverse outcomes in chronic kidney disease , 2021, Leukemia.

[8]  R. Majeti,et al.  Clonal hematopoiesis: from mechanisms to clinical intervention. , 2021, Cancer discovery.

[9]  P. Campbell,et al.  The longitudinal dynamics and natural history of clonal haematopoiesis , 2021, Nature.

[10]  R. Marioni,et al.  Longitudinal dynamics of clonal hematopoiesis identifies gene-specific fitness effects , 2021, Nature Medicine.

[11]  C. Benner,et al.  DNMT3A haploinsufficiency causes dichotomous DNA methylation defects at enhancers in mature human immune cells , 2021, The Journal of experimental medicine.

[12]  J. Vonk,et al.  Prevalence, predictors, and outcomes of clonal hematopoiesis in individuals aged ≥80 years. , 2021, Blood advances.

[13]  M. Kimmel,et al.  Chronic infection drives Dnmt3a-loss-of-function clonal hematopoiesis via IFNγ signaling. , 2021, Cell stem cell.

[14]  Ivana V. Yang,et al.  Author Correction: Inherited causes of clonal haematopoiesis in 97,691 whole genomes , 2021, Nature.

[15]  Y. Takeishi,et al.  Clonal Hematopoiesis and JAK2V617F Mutations in Patients With Cardiovascular Disease , 2021, JACC. CardioOncology.

[16]  P. Awadalla,et al.  Clonal hematopoiesis is associated with risk of severe Covid-19 , 2020, Nature Communications.

[17]  Stuart M. Gardos,et al.  Cancer therapy shapes the fitness landscape of clonal hematopoiesis , 2020, Nature Genetics.

[18]  O. Guryanova,et al.  Alterations to DNMT3A in Hematologic Malignancies , 2020, Cancer Research.

[19]  C. Deswarte,et al.  High prevalence of clonal hematopoiesis in the blood and bone marrow of healthy volunteers. , 2020, Blood Advances.

[20]  W. Tapper,et al.  Clonal myelopoiesis in the UK Biobank cohort: ASXL1 mutations are strongly associated with smoking , 2020, Leukemia.

[21]  M. Berger,et al.  The impact of poly ADP ribose polymerase (PARP) inhibitors on clonal hematopoiesis. , 2020 .

[22]  T. Druley,et al.  The evolutionary dynamics and fitness landscape of clonal hematopoiesis , 2020, Science.

[23]  O. Sansom,et al.  WNT and β-Catenin in Cancer: Genes and Therapy , 2020, Annual Review of Cancer Biology.

[24]  N. Schultz,et al.  Systemic Chemotherapy for Metastatic Colitis-Associated Cancer Has a Worse Outcome Than Sporadic Colorectal Cancer: Matched Case Cohort Analysis. , 2020, Clinical colorectal cancer.

[25]  Monjur Ahmed Colon Cancer: A Clinician’s Perspective in 2019 , 2020, Gastroenterology research.

[26]  Christopher A. Miller,et al.  Remethylation of Dnmt3a−/− hematopoietic cells is associated with partial correction of gene dysregulation and reduced myeloid skewing , 2020, Proceedings of the National Academy of Sciences.

[27]  M. Goodell,et al.  Environmental Influences on Clonal Hematopoiesis. , 2019, Experimental hematology.

[28]  D. Spencer,et al.  Inflammatory Cytokines Promote Clonal Hematopoiesis with Specific Mutations in Ulcerative Colitis Patients. , 2019, Experimental hematology.

[29]  B. Ebert,et al.  Clonal hematopoiesis in human aging and disease , 2019, Science.

[30]  S. Fichtlscherer,et al.  Clonal haematopoiesis in patients with degenerative aortic valve stenosis undergoing transcatheter aortic valve implantation , 2019, European heart journal.

[31]  E. Giovannucci,et al.  Global burden of colorectal cancer: emerging trends, risk factors and prevention strategies , 2019, Nature Reviews Gastroenterology & Hepatology.

[32]  E. Papaemmanuil,et al.  Managing Clonal Hematopoiesis in Patients With Solid Tumors. , 2019, Journal of clinical oncology : official journal of the American Society of Clinical Oncology.

[33]  B. Brüne,et al.  Association of Mutations Contributing to Clonal Hematopoiesis With Prognosis in Chronic Ischemic Heart Failure , 2018, JAMA cardiology.

[34]  M. Castro,et al.  Mouse Model of Colitis-Associated Colorectal Cancer (CAC): Isolation and Characterization of Mucosal-Associated Lymphoid Cells. , 2018, Methods in molecular biology.

[35]  J. Reis-Filho,et al.  Evaluating clonal hematopoiesis in tumor infiltrating leukocytes in breast cancer and secondary hematologic malignancies. , 2019, Journal of the National Cancer Institute.

[36]  A. Jemal,et al.  Cancer statistics, 2019 , 2019, CA: a cancer journal for clinicians.

[37]  P. Libby,et al.  Loss-of-Function Mutations in Dnmt3a and Tet2 Lead to Accelerated Atherosclerosis and Convergent Macrophage Phenotypes in Mice , 2018, Blood.

[38]  P. A. Futreal,et al.  PPM1D Mutations Drive Clonal Hematopoiesis in Response to Cytotoxic Chemotherapy , 2018, Cell stem cell.

[39]  M. Ladanyi,et al.  Prevalence of Clonal Hematopoiesis Mutations in Tumor-Only Clinical Genomic Profiling of Solid Tumors , 2018, JAMA oncology.

[40]  M. Casey,et al.  Axitinib versus placebo as an adjuvant treatment of renal cell carcinoma: results from the phase III, randomized ATLAS trial , 2018, Annals of oncology : official journal of the European Society for Medical Oncology.

[41]  Peter Guttorp,et al.  Visualizing hematopoiesis as a stochastic process. , 2018, Blood advances.

[42]  Peter J. Campbell,et al.  Population dynamics of normal human blood inferred from somatic mutations , 2018, Nature.

[43]  Stanley W. K. Ng,et al.  Prediction of acute myeloid leukaemia risk in healthy individuals , 2018, Nature.

[44]  K. Ballman,et al.  Somatic mutations precede acute myeloid leukemia years before diagnosis , 2018, Nature Medicine.

[45]  D. Hayes,et al.  Identification of Clonal Hematopoiesis Mutations in Solid Tumor Patients Undergoing Unpaired Next-Generation Sequencing Assays , 2018, Clinical Cancer Research.

[46]  J. Ross,et al.  Detection of clonal hematopoiesis of indeterminate potential in clinical sequencing of solid tumor specimens. , 2018, Blood.

[47]  Wei Li,et al.  Loss of Dnmt3a Immortalizes Hematopoietic Stem Cells In Vivo , 2018, Cell reports.

[48]  D. Goukassian,et al.  Tet2-Mediated Clonal Hematopoiesis Accelerates Heart Failure Through a Mechanism Involving the IL-1β/NLRP3 Inflammasome. , 2018, Journal of the American College of Cardiology.

[49]  R. Levine,et al.  Clonal Hematopoiesis and Evolution to Hematopoietic Malignancies. , 2018, Cell stem cell.

[50]  Christopher A. Miller,et al.  Cellular stressors contribute to the expansion of hematopoietic clones of varying leukemic potential , 2018, Nature Communications.

[51]  T. Putoczki,et al.  In Vivo Models of Inflammatory Bowel Disease and Colitis-Associated Cancer. , 2018, Methods in molecular biology.

[52]  M. Ladanyi,et al.  Therapy-Related Clonal Hematopoiesis in Patients with Non-hematologic Cancers Is Common and Associated with Adverse Clinical Outcomes. , 2017, Cell stem cell.

[53]  Kari Stefansson,et al.  Clonal hematopoiesis, with and without candidate driver mutations, is common in the elderly. , 2017, Blood.

[54]  M. Dubé,et al.  DNMT3A and TET2 dominate clonal hematopoiesis and demonstrate benign phenotypes and different genetic predispositions. , 2017, Blood.

[55]  S. Gabriel,et al.  Clonal Hematopoiesis and Risk of Atherosclerotic Cardiovascular Disease , 2017, The New England journal of medicine.

[56]  Matthew A. Cooper,et al.  Clonal hematopoiesis associated with TET2 deficiency accelerates atherosclerosis development in mice , 2017, Science.

[57]  R. Wilson,et al.  CpG Island Hypermethylation Mediated by DNMT3A Is a Consequence of AML Progression , 2017, Cell.

[58]  C. Balestrieri,et al.  Dnmt3a restrains mast cell inflammatory responses , 2017, Proceedings of the National Academy of Sciences.

[59]  S. Manley,et al.  Detection of somatic variants in peripheral blood lymphocytes using a next generation sequencing multigene pan cancer panel. , 2017, Cancer genetics.

[60]  M. Goodell,et al.  DNMT3A in Leukemia. , 2017, Cold Spring Harbor perspectives in medicine.

[61]  H. McLeod,et al.  Clonal haemopoiesis and therapy-related myeloid malignancies in elderly patients: a proof-of-concept, case-control study. , 2017, The Lancet. Oncology.

[62]  Francine E. Garrett-Bakelman,et al.  DNMT3A mutations promote anthracycline resistance in acute myeloid leukemia via impaired nucleosome remodeling , 2016, Nature Medicine.

[63]  T. Druley,et al.  Clonal haematopoiesis harbouring AML-associated mutations is ubiquitous in healthy adults , 2016, Nature Communications.

[64]  T. Walsh,et al.  Somatic Mosaic Mutations in PPM1D and TP53 in the Blood of Women With Ovarian Carcinoma. , 2016, JAMA oncology.

[65]  Francine E. Garrett-Bakelman,et al.  Dnmt3a Regulates Myeloproliferation and Liver-Specific Expansion of Hematopoietic Stem and Progenitor Cells , 2015, Leukemia.

[66]  Caitlyn W. Barrett,et al.  AOM/DSS Model of Colitis-Associated Cancer. , 2016, Methods in molecular biology.

[67]  B. Ebert,et al.  Clonal hematopoiesis of indeterminate potential and its distinction from myelodysplastic syndromes. , 2015, Blood.

[68]  R. McIntyre,et al.  Mouse models of colorectal cancer as preclinical models , 2015, BioEssays : news and reviews in molecular, cellular and developmental biology.

[69]  A. Viale,et al.  Somatic mutations in leukocytes infiltrating primary breast cancers , 2015, npj Breast Cancer.

[70]  Donavan T. Cheng,et al.  Memorial Sloan Kettering-Integrated Mutation Profiling of Actionable Cancer Targets (MSK-IMPACT): A Hybridization Capture-Based Next-Generation Sequencing Clinical Assay for Solid Tumor Molecular Oncology. , 2015, The Journal of molecular diagnostics : JMD.

[71]  Laurent Beaugerie,et al.  Cancers complicating inflammatory bowel disease. , 2015, The New England journal of medicine.

[72]  D. Butkiewicz,et al.  Truncating mutations of PPM1D are found in blood DNA samples of lung cancer patients , 2015, British Journal of Cancer.

[73]  E. Zeggini,et al.  Leukemia-Associated Somatic Mutations Drive Distinct Patterns of Age-Related Clonal Hemopoiesis , 2015, Cell reports.

[74]  J. Mesirov,et al.  The Molecular Signatures Database (MSigDB) hallmark gene set collection. , 2015, Cell systems.

[75]  M. McCarthy,et al.  Age-related clonal hematopoiesis associated with adverse outcomes. , 2014, The New England journal of medicine.

[76]  W. Huber,et al.  Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2 , 2014, Genome Biology.

[77]  S. Gabriel,et al.  Clonal hematopoiesis and blood-cancer risk inferred from blood DNA sequence. , 2014, The New England journal of medicine.

[78]  Thomas J. Hudson,et al.  Corrigendum: Identification of pre-leukaemic haematopoietic stem cells in acute leukaemia , 2014, Nature.

[79]  I. Weissman,et al.  Preleukemic mutations in human acute myeloid leukemia affect epigenetic regulators and persist in remission , 2014, Proceedings of the National Academy of Sciences.

[80]  Benjamin J. Raphael,et al.  Genomic and epigenomic landscapes of adult de novo acute myeloid leukemia. , 2013, The New England journal of medicine.

[81]  Benjamin E. Gross,et al.  Integrative Analysis of Complex Cancer Genomics and Clinical Profiles Using the cBioPortal , 2013, Science Signaling.

[82]  M. Goodell,et al.  Flow cytometry analysis of murine hematopoietic stem cells , 2013, Cytometry. Part A : the journal of the International Society for Analytical Cytology.

[83]  Belgin Dogan,et al.  Intestinal Inflammation Targets Cancer-Inducing Activity of the Microbiota , 2012, Science.

[84]  Mithat Gonen,et al.  Recurrent Somatic TET2 Mutations in Normal Elderly Individuals With Clonal Hematopoiesis , 2012, Nature Genetics.

[85]  I. Weissman,et al.  Clonal Evolution of Preleukemic Hematopoietic Stem Cells Precedes Human Acute Myeloid Leukemia , 2012, Science Translational Medicine.

[86]  Veronika Rockova,et al.  Mutant DNMT3A: a marker of poor prognosis in acute myeloid leukemia. , 2012, Blood.

[87]  Benjamin E. Gross,et al.  The cBio cancer genomics portal: an open platform for exploring multidimensional cancer genomics data. , 2012, Cancer discovery.

[88]  J. Berg,et al.  Dnmt3a is essential for hematopoietic stem cell differentiation , 2011, Nature Genetics.

[89]  M. Gore,et al.  Axitinib for the Management of Metastatic Renal Cell Carcinoma , 2011, Drugs in R&D.

[90]  J. Licht,et al.  DNMT3A mutations in acute myeloid leukemia , 2011, Nature Genetics.

[91]  Yong-mei Zhu,et al.  Exome sequencing identifies somatic mutations of DNA methyltransferase gene DNMT3A in acute monocytic leukemia , 2011, Nature Genetics.

[92]  S. Morini,et al.  The AOM/DSS murine model for the study of colon carcinogenesis: From pathways to diagnosis and therapy studies , 2011, Journal of carcinogenesis.

[93]  Li Ding,et al.  Recurrent DNMT3A Mutations in Patients with Myelodysplastic Syndromes , 2011, Leukemia.

[94]  H. Herfarth,et al.  Gnotobiotic IL-10−/−; NF-κBEGFP Mice Develop Rapid and Severe Colitis Following Campylobacter jejuni Infection , 2009, PloS one.

[95]  H. Herfarth,et al.  Modulation of the Intestinal Microbiota Alters Colitis-Associated Colorectal Cancer Susceptibility , 2009, PloS one.

[96]  R. Jaenisch,et al.  Ablation of de novo DNA methyltransferase Dnmt3a in the nervous system leads to neuromuscular defects and shortened lifespan , 2007, Developmental dynamics : an official publication of the American Association of Anatomists.

[97]  M. Neurath,et al.  High resolution colonoscopy in live mice , 2006, Nature Protocols.

[98]  C. Jobin,et al.  Gnotobiotic IL-10-/-;NF-kappa B(EGFP) mice reveal the critical role of TLR/NF-kappa B signaling in commensal bacteria-induced colitis. , 2007, Journal of immunology.

[99]  Pablo Tamayo,et al.  Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles , 2005, Proceedings of the National Academy of Sciences of the United States of America.

[100]  Takuji Tanaka,et al.  A novel inflammation‐related mouse colon carcinogenesis model induced by azoxymethane and dextran sodium sulfate , 2003, Cancer science.

[101]  E. Bloemena,et al.  Chronic experimental colitis induced by dextran sulphate sodium (DSS) is characterized by Th1 and Th2 cytokines , 1998, Clinical and experimental immunology.

[102]  D. Gilliland,et al.  Nonrandom X-inactivation patterns in normal females: lyonization ratios vary with age. , 1996, Blood.

[103]  H. Cooper,et al.  Clinicopathologic study of dextran sulfate sodium experimental murine colitis. , 1993, Laboratory investigation; a journal of technical methods and pathology.

[104]  N. Dubrawsky Cancer statistics , 1989, CA: a cancer journal for clinicians.