Facilitated DNA search by multidomain transcription factors: cross talk via a flexible linker.
暂无分享,去创建一个
[1] Y. Levy,et al. Searching DNA via a "Monkey Bar" mechanism: the significance of disordered tails. , 2010, Journal of molecular biology.
[2] Peter G Wolynes,et al. Capillarity theory for the fly-casting mechanism , 2010, Proceedings of the National Academy of Sciences.
[3] X. Xie,et al. Nonspecifically bound proteins spin while diffusing along DNA , 2009, Nature Structural &Molecular Biology.
[4] Andrej Kosmrlj,et al. How a protein searches for its site on DNA: the mechanism of facilitated diffusion , 2009 .
[5] Yaakov Levy,et al. Arc-repressor dimerization on DNA: folding rate enhancement by colocalization. , 2009, Biophysical journal.
[6] O. Bénichou,et al. Quantifying hopping and jumping in facilitated diffusion of DNA-binding proteins. , 2009, Physical review letters.
[7] S. Halford,et al. An end to 40 years of mistakes in DNA-protein association kinetics? , 2009, Biochemical Society transactions.
[8] Y. Levy,et al. Protein sliding along DNA: dynamics and structural characterization. , 2009, Journal of molecular biology.
[9] G. Clore,et al. Global jumping and domain-specific intersegment transfer between DNA cognate sites of the multidomain transcription factor Oct-1 , 2008, Proceedings of the National Academy of Sciences.
[10] M. Sheinman,et al. The effects of intersegmental transfers on target location by proteins , 2008, Physical biology.
[11] Antoine M. van Oijen,et al. Tumor suppressor p53 slides on DNA with low friction and high stability. , 2008, Biophysical journal.
[12] B. Shklovskii,et al. How a protein searches for its specific site on DNA: the role of intersegment transfer. , 2007, Physical review. E, Statistical, nonlinear, and soft matter physics.
[13] Huan-Xiang Zhou,et al. Do electrostatic interactions destabilize protein-nucleic acid binding? , 2007, Biopolymers.
[14] Peter G Wolynes,et al. Fly-casting in protein-DNA binding: frustration between protein folding and electrostatics facilitates target recognition. , 2007, Journal of the American Chemical Society.
[15] G Marius Clore,et al. NMR structural and kinetic characterization of a homeodomain diffusing and hopping on nonspecific DNA , 2006, Proceedings of the National Academy of Sciences.
[16] G. Marius Clore,et al. Detecting transient intermediates in macromolecular binding by paramagnetic NMR , 2006, Nature.
[17] P. Blainey,et al. A base-excision DNA-repair protein finds intrahelical lesion bases by fast sliding in contact with DNA. , 2006, Proceedings of the National Academy of Sciences of the United States of America.
[18] G. Clore,et al. Direct observation of enhanced translocation of a homeodomain between DNA cognate sites by NMR exchange spectroscopy. , 2006, Journal of the American Chemical Society.
[19] K. Klenin,et al. Facilitated diffusion of DNA-binding proteins. , 2005, Physical review letters.
[20] Jie Shen,et al. T to C Substitution at –175 or –173 of the γ-Globin Promoter Affects GATA-1 and Oct-1 Binding in Vitro Differently but Can Independently Reproduce the Hereditary Persistence of Fetal Hemoglobin Phenotype in Transgenic Mice* , 2005, Journal of Biological Chemistry.
[21] Huan-Xiang Zhou,et al. Enhancement of association rates by nonspecific binding to DNA and cell membranes. , 2004, Physical review letters.
[22] J. Marko,et al. How do site-specific DNA-binding proteins find their targets? , 2004, Nucleic acids research.
[23] L. Mirny,et al. Kinetics of protein-DNA interaction: facilitated target location in sequence-dependent potential. , 2004, Biophysical journal.
[24] Huan-Xiang Zhou,et al. Comparison of calculation and experiment implicates significant electrostatic contributions to the binding stability of barnase and barstar. , 2003, Biophysical journal.
[25] Dennis Bray,et al. Binding and diffusion of CheR molecules within a cluster of membrane receptors. , 2002, Biophysical journal.
[26] H. Zhou,et al. The affinity-enhancing roles of flexible linkers in two-domain DNA-binding proteins. , 2001, Biochemistry.
[27] Nathan A. Baker,et al. Electrostatics of nanosystems: Application to microtubules and the ribosome , 2001, Proceedings of the National Academy of Sciences of the United States of America.
[28] S. Teichmann,et al. Domain combinations in archaeal, eubacterial and eukaryotic proteomes. , 2001, Journal of molecular biology.
[29] Fulvio Mavilio,et al. The Recruitment of SOX/OCT Complexes and the Differential Activity of HOXA1 and HOXB1 Modulate the Hoxb1Auto-regulatory Enhancer Function* , 2001, The Journal of Biological Chemistry.
[30] J A Epstein,et al. Crystal structure of the human Pax6 paired domain-DNA complex reveals specific roles for the linker region and carboxy-terminal subdomain in DNA binding. , 1999, Genes & development.
[31] C. Chothia,et al. Structural assignments to the Mycoplasma genitalium proteins show extensive gene duplications and domain rearrangements. , 1998, Proceedings of the National Academy of Sciences of the United States of America.
[32] An-Suei Yang,et al. Electrostatic contributions to the binding free energy of the lambdacI repressor to DNA. , 1998, Biophysical journal.
[33] R. Balling,et al. Pax genes and organogenesis , 1997, BioEssays : news and reviews in molecular, cellular and developmental biology.
[34] J A McCammon,et al. Electrostatic effects in homeodomain-DNA interactions. , 1997, Journal of molecular biology.
[35] S. Nordeen,et al. DNA Intersegment Transfer, How Steroid Receptors Search for A Target Site* , 1997, The Journal of Biological Chemistry.
[36] P Gruss,et al. Pax genes and their roles in cell differentiation and development. , 1996, Current opinion in cell biology.
[37] M. Yamada,et al. PAX6 missense mutation in isolated foveal hypoplasia , 1996, Nature Genetics.
[38] C. Baldwin,et al. Mutations in PAX3 that cause Waardenburg syndrome type I: ten new mutations and review of the literature. , 1995, American journal of medical genetics.
[39] Claude Desplan,et al. Crystal structure of a paired domain-DNA complex at 2.5 å resolution reveals structural basis for pax developmental mutations , 1995, Cell.
[40] J A Epstein,et al. Two independent and interactive DNA-binding subdomains of the Pax6 paired domain are regulated by alternative splicing. , 1994, Genes & development.
[41] Juli D. Klemm,et al. Crystal structure of the Oct-1 POU domain bound to an octamer site: DNA recognition with tethered DNA-binding modules , 1994, Cell.
[42] Mark J Alkema,et al. The DNA binding specificity of the bipartite POU domain and its subdomains. , 1992, The EMBO journal.
[43] J A McCammon,et al. Poisson-Boltzmann analysis of the lambda repressor-operator interaction. , 1992, Biophysical journal.
[44] W. Herr,et al. Segments of the POU domain influence one another's DNA-binding specificity , 1992, Molecular and cellular biology.
[45] C. Verrijzer,et al. The oct-1 homeo domain contacts only part of the octamer sequence and full oct-1 DNA-binding activity requires the POU-specific domain. , 1990, Genes & development.
[46] M. Rosenfeld,et al. The POU-specific domain of Pit-1 is essential for sequence-specific, high affinity DNA binding and DNA-dependent Pit-1—Pit-1 interactions , 1990, Cell.
[47] W. Herr,et al. The POU domain is a bipartite DNA-binding structure , 1988, Nature.
[48] M G Fried,et al. Kinetics and mechanism in the reaction of gene regulatory proteins with DNA. , 1984, Journal of molecular biology.
[49] P. V. von Hippel,et al. Diffusion-driven mechanisms of protein translocation on nucleic acids. 1. Models and theory. , 1981, Biochemistry.
[50] P. V. von Hippel,et al. Diffusion-driven mechanisms of protein translocation on nucleic acids. 2. The Escherichia coli repressor--operator interaction: equilibrium measurements. , 1981, Biochemistry.
[51] V. van Heyningen,et al. PAX6 mutations reviewed , 1998, Human mutation.
[52] C. Pabo,et al. Oct-1 POU domain-DNA interactions: cooperative binding of isolated subdomains and effects of covalent linkage. , 1996, Genes & development.
[53] E T Stuart,et al. Mammalian Pax genes. , 1994, Annual review of genetics.
[54] M. Noll. Evolution and role of Pax genes. , 1993, Current opinion in genetics & development.