Nucleus-specific linker histones Hho1 and Mlh1 form distinct protein interactions during growth, starvation and development in Tetrahymena thermophila

[1]  S. Pu,et al.  The Med31 Conserved Component of the Divergent Mediator Complex in Tetrahymena thermophila Participates in Developmental Regulation , 2019, Current Biology.

[2]  J. Fillingham,et al.  Functional Proteomics of Nuclear Proteins in Tetrahymena thermophila: A Review , 2019, Genes.

[3]  Daniel W. A. Buchan,et al.  The PSIPRED Protein Analysis Workbench: 20 years on , 2019, Nucleic Acids Res..

[4]  A. Bowman,et al.  The histone chaperoning pathway: from ribosome to nucleosome , 2019, Essays in biochemistry.

[5]  R. Roeder,et al.  Gene-Specific H1 Eviction through a Transcriptional Activator→p300→NAP1→H1 Pathway. , 2019, Molecular cell.

[6]  A. Gingras,et al.  Proteomic Analysis of Histones H2A/H2B and Variant Hv1 in Tetrahymena thermophila Reveals an Ancient Network of Chaperones , 2019, Molecular biology and evolution.

[7]  E. Campos,et al.  H3-H4 Histone Chaperone Pathways. , 2018, Annual review of genetics.

[8]  G. Almouzni,et al.  Histone supply: Multitiered regulation ensures chromatin dynamics throughout the cell cycle , 2018, The Journal of cell biology.

[9]  S. Berger,et al.  Regulation of chromatin and gene expression by metabolic enzymes and metabolites , 2018, Nature Reviews Molecular Cell Biology.

[10]  Y. Hiraoka,et al.  Nuclear localization signal targeting to macronucleus and micronucleus in binucleated ciliate Tetrahymena thermophila , 2018, Genes to Cells.

[11]  A. Gingras,et al.  The bromodomain-containing protein Ibd1 links multiple chromatin-related protein complexes to highly expressed genes in Tetrahymena thermophila , 2018, Epigenetics & Chromatin.

[12]  Chuan He,et al.  VIRMA mediates preferential m6A mRNA methylation in 3′UTR and near stop codon and associates with alternative polyadenylation , 2018, Cell Discovery.

[13]  W. Vermeulen,et al.  DNA damage-induced histone H1 ubiquitylation is mediated by HUWE1 and stimulates the RNF8-RNF168 pathway , 2017, Scientific Reports.

[14]  Wei Wang,et al.  Micronucleus-specific histone H1 is required for micronuclear chromosome integrity in Tetrahymena thermophila , 2017, PloS one.

[15]  Yawen Bai,et al.  Emerging roles of linker histones in regulating chromatin structure and function , 2017, Nature Reviews Molecular Cell Biology.

[16]  E. N. Andreyeva,et al.  Regulatory functions and chromatin loading dynamics of linker histone H1 during endoreplication in Drosophila , 2017, Genes & development.

[17]  D. Yero,et al.  Complex Evolutionary History of the Mammalian Histone H1.1–H1.5 Gene Family , 2017, Molecular biology and evolution.

[18]  Kensuke Kataoka,et al.  Heterochromatin aggregation during DNA elimination in Tetrahymena is facilitated by a prion-like protein , 2017, Journal of Cell Science.

[19]  M. Tyers,et al.  Data Independent Acquisition analysis in ProHits 4.0. , 2016, Journal of proteomics.

[20]  Michael A. Freitas,et al.  Identification of Replication-Dependent and Replication-Independent Linker Histone Complexes , 2016 .

[21]  Kenneth H. Roux,et al.  An improved smaller biotin ligase for BioID proximity labeling , 2016, Molecular biology of the cell.

[22]  Sudhir Kumar,et al.  MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets. , 2016, Molecular biology and evolution.

[23]  Yuhong Fan,et al.  Role of H1 linker histones in mammalian development and stem cell differentiation. , 2016, Biochimica et biophysica acta.

[24]  Chunaram Choudhary,et al.  Histone H1 couples initiation and amplification of ubiquitin signalling after DNA damage , 2015, Nature.

[25]  R. Schneider,et al.  The H1 linker histones: multifunctional proteins beyond the nucleosomal core particle , 2015, EMBO reports.

[26]  R. Flickinger.  Possible role of H1 histone in replication timing , 2015, Development, growth & differentiation.

[27]  Yang Zhang,et al.  The I-TASSER Suite: protein structure and function prediction , 2014, Nature Methods.

[28]  J. Fillingham,et al.  Molecular evolution of NASP and conserved histone H3/H4 transport pathway , 2014, BMC Evolutionary Biology.

[29]  R. Schneider,et al.  Histone variants: key players of chromatin , 2014, Cell and Tissue Research.

[30]  Guomin Liu,et al.  SAINTexpress: improvements and additional features in Significance Analysis of INTeractome software. , 2014, Journal of proteomics.

[31]  A. Gingras,et al.  Conserved Asf1-importin β physical interaction in growth and sexual development in the ciliate Tetrahymena thermophila. , 2013, Journal of proteomics.

[32]  Wei Wang,et al.  Localization and functional analysis of HmgB3p, a novel protein containing high-mobility-group-box domain from Tetrahymena thermophila. , 2013, Gene.

[33]  Michael A. Freitas,et al.  H1 histones: current perspectives and challenges , 2013, Nucleic acids research.

[34]  K. Aldape,et al.  PKM2 Phosphorylates Histone H3 and Promotes Gene Transcription and Tumorigenesis , 2012, Cell.

[35]  Kevin W Eliceiri,et al.  NIH Image to ImageJ: 25 years of image analysis , 2012, Nature Methods.

[36]  G. Almouzni,et al.  Dynamics of histone H3 deposition in vivo reveal a nucleosome gap-filling mechanism for H3.3 to maintain chromatin integrity. , 2011, Molecular cell.

[37]  Peer Bork,et al.  SMART 7: recent updates to the protein domain annotation resource , 2011, Nucleic Acids Res..

[38]  M. Parthun,et al.  The human histone chaperone sNASP interacts with linker and core histones through distinct mechanisms , 2011, Nucleic acids research.

[39]  D. Reinberg,et al.  The Program for Processing Newly-synthesized Histones H3.1 and H4 , 2010, Nature Structural &Molecular Biology.

[40]  A. Skoultchi,et al.  Linker histone H1 is essential for Drosophila development, the establishment of pericentric heterochromatin, and a normal polytene chromosome structure. , 2009, Genes & development.

[41]  Wei Wang,et al.  Microarray Analyses of Gene Expression during the Tetrahymena thermophila Life Cycle , 2009, PloS one.

[42]  M. Parthun,et al.  Expanded binding specificity of the human histone chaperone NASP , 2008, Nucleic acids research.

[43]  J. Workman,et al.  Diverse functions of WD40 repeat proteins in histone recognition. , 2008, Genes & development.

[44]  R. Schneider,et al.  The histone H1 family: specific members, specific functions? , 2008, Biological chemistry.

[45]  James E Haber,et al.  Histone chaperones: an escort network regulating histone traffic , 2007, Nature Structural &Molecular Biology.

[46]  Michael L. Creech,et al.  Integration of biological networks and gene expression data using Cytoscape , 2007, Nature Protocols.

[47]  M. Bustin,et al.  HMG chromosomal proteins in development and disease. , 2007, Trends in cell biology.

[48]  J. Fillingham,et al.  Molecular Genetic Analysis of an SNF2/brahma-Related Gene in Tetrahymena thermophila Suggests Roles in Growth and Nuclear Development , 2006, Eukaryotic Cell.

[49]  J. Arrondo,et al.  DNA-induced Secondary Structure of the Carboxyl-terminal Domain of Histone H1* , 2005, Journal of Biological Chemistry.

[50]  M. Mayer,et al.  Hsp70 chaperones: Cellular functions and molecular mechanism , 2005, Cellular and Molecular Life Sciences.

[51]  M. Gorovsky,et al.  RNA Polymerase II Localizes in Tetrahymena thermophila Meiotic Micronuclei When Micronuclear Transcription Associated with Genome Rearrangement Occurs , 2004, Eukaryotic Cell.

[52]  G. Almouzni,et al.  Histone H3.1 and H3.3 Complexes Mediate Nucleosome Assembly Pathways Dependent or Independent of DNA Synthesis , 2004, Cell.

[53]  M. Yao,et al.  Programmed DNA Deletion As an RNA-Guided System of Genome Defense , 2003, Science.

[54]  S. Jackson,et al.  Suppression of homologous recombination by the Saccharomyces cerevisiae linker histone. , 2003, Molecular cell.

[55]  K. Willison,et al.  Structure and function of a protein folding machine: the eukaryotic cytosolic chaperonin CCT , 2002, FEBS letters.

[56]  M. Lipinski,et al.  HIRA is critical for a nucleosome assembly pathway independent of DNA synthesis. , 2002, Molecular cell.

[57]  Y. Dou,et al.  Regulation of transcription by H1 phosphorylation in Tetrahymena is position independent and requires clustered sites , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[58]  Cynthia J. Brame,et al.  Nuclear Import of Histone H2a and H2b Is Mediated by a Network of Karyopherins , 2001, The Journal of cell biology.

[59]  R. Schneiter,et al.  Molecular identification of virilizer, a gene required for the expression of the sex-determining gene Sex-lethal in Drosophila melanogaster. , 2001, Genetics.

[60]  J. Fillingham,et al.  Cis-acting requirements in flanking DNA for the programmed elimination of mse2.9: a common mechanism for deletion of internal eliminated sequences from the developing macronucleus of Tetrahymena thermophila. , 2001, Nucleic acids research.

[61]  M. O'Rand,et al.  Characterization of the Histone H1-binding Protein, NASP, as a Cell Cycle-regulated Somatic Protein* , 2000, The Journal of Biological Chemistry.

[62]  Y. Dou,et al.  Phosphorylation of linker histone H1 regulates gene expression in vivo by creating a charge patch. , 2000, Molecular cell.

[63]  C. Allis,et al.  Phosphorylation of linker histone H1 regulates gene expression in vivo by mimicking H1 removal. , 1999, Molecular cell.

[64]  D. Landsman,et al.  The Biochemical and Phenotypic Characterization of Hho1p, the Putative Linker Histone H1 of Saccharomyces cerevisiae * , 1998, The Journal of Biological Chemistry.

[65]  T. Richmond,et al.  Crystal structure of the nucleosome core particle at 2.8 Å resolution , 1997, Nature.

[66]  Xuetong Shen,et al.  Linker histories are not essential and affect chromatin condensation in vivo , 1995, Cell.

[67]  C. Allis,et al.  Four distinct and unusual linker proteins in a mitotically dividing nucleus are derived from a 71-kilodalton polyprotein, lack p34cdc2 sites, and contain protein kinase A sites , 1994, Molecular and cellular biology.

[68]  H. Hayashi,et al.  Tetrahymena histone H1. Isolation and amino acid sequence lacking the central hydrophobic domain conserved in other H1 histones. , 1987, Journal of biochemistry.

[69]  C. Allis,et al.  An intervening sequence in an unusual histone H1 gene of Tetrahymena thermophila. , 1986, Proceedings of the National Academy of Sciences of the United States of America.

[70]  M. Yao,et al.  DNA elimination in tetrahymena: A developmental process involving extensive breakage and rejoining of DNA at defined sites , 1984, Cell.

[71]  C. Allis,et al.  Conjugation in Tetrahymena thermophila. A temporal analysis of cytological stages. , 1982, Experimental cell research.

[72]  P. Bruns,et al.  Pair formation in tetrahymena pyriformis, an inducible developmental system. , 1974, The Journal of experimental zoology.

[73]  J. Ausió,et al.  Evolution of high mobility group nucleosome-binding proteins and its implications for vertebrate chromatin specialization. , 2015, Molecular biology and evolution.

[74]  P. Bruns,et al.  Costimulation in Tetrahymena pyriformis: a developmental interaction between specially prepared cells. , 1975, Developmental biology.