Sequence analysis iDNA 4 mC : identifying DNA N 4-methylcytosine sites based on nucleotide chemical properties
暂无分享,去创建一个
Hao Lin | Hui Ding | Pengmian Feng | Hui Yang | Wei Chen | Wei Chen | Hao Lin | H. Ding | Pengmian Feng | Hui Yang
[1] A. Jeltsch,et al. The Cytosine N4-Methyltransferase M.PvuII Also Modifies Adenine Residues , 2001, Biological chemistry.
[2] Wei Chen,et al. iPro54-PseKNC: a sequence-based predictor for identifying sigma-54 promoters in prokaryote with pseudo k-tuple nucleotide composition , 2014, Nucleic acids research.
[3] Zhengwei Zhu,et al. CD-HIT: accelerated for clustering the next-generation sequencing data , 2012, Bioinform..
[4] Zhi Xie,et al. MethSMRT: an integrative database for DNA N6-methyladenine and N4-methylcytosine generated by single-molecular real-time sequencing , 2016, Nucleic Acids Res..
[5] Huiping Wang,et al. Analysis and identification of toxin targets by topological properties in protein-protein interaction network. , 2014, Journal of theoretical biology.
[6] Dongwan D. Kang,et al. The Epigenomic Landscape of Prokaryotes , 2016, PLoS genetics.
[7] Maria Strazzullo,et al. DNA methylation 40 years later: Its role in human health and disease , 2005, Journal of cellular physiology.
[8] Robert J. Schmitz,et al. Base-resolution detection of N4-methylcytosine in genomic DNA using 4mC-Tet-assisted-bisulfite- sequencing , 2015, Nucleic acids research.
[9] P. Modrich,et al. Mechanisms and biological effects of mismatch repair. , 1991, Annual review of genetics.
[10] R. Blumenthal,et al. Finding a basis for flipping bases. , 1996, Structure.
[11] Shunmin He,et al. N6-Methyladenine DNA Modification in Drosophila , 2015, Cell.
[12] M. Esteller,et al. An Adenine Code for DNA: A Second Life for N6-Methyladenine , 2015, Cell.
[13] Tyson A. Clark,et al. Direct detection of DNA methylation during single-molecule, real-time sequencing , 2010, Nature Methods.
[14] W. Messer,et al. Timing and targeting: The biological functions of Dam methylation in E. coli , 1988, Cell.
[15] J. Hanley,et al. The meaning and use of the area under a receiver operating characteristic (ROC) curve. , 1982, Radiology.
[16] Ho-Jin Choi,et al. DNA Encoding for Splice Site Prediction in Large DNA Sequence , 2013, DASFAA Workshops.
[17] R. Roberts,et al. Hhal methyltransferase flips its target base out of the DNA helix , 1994, Cell.
[18] Matthew K Waldor,et al. Entering the era of bacterial epigenomics with single molecule real time DNA sequencing. , 2013, Current opinion in microbiology.
[19] K. Chou. Some remarks on protein attribute prediction and pseudo amino acid composition , 2010, Journal of Theoretical Biology.
[20] K. Chou,et al. iACP: a sequence-based tool for identifying anticancer peptides , 2016, Oncotarget.
[21] R. Blumenthal,et al. Structure of pvu II DNA-(cytosine N4) methyltransferase, an example of domain permutation and protein fold assignment. , 1997, Nucleic acids research.
[22] Qi Zhao,et al. GPS-SUMO: a tool for the prediction of sumoylation sites and SUMO-interaction motifs , 2014, Nucleic Acids Res..
[23] L. Doré,et al. N 6-Methyldeoxyadenosine Marks Active Transcription Start Sites in Chlamydomonas , 2015, Cell.
[24] Xiaodong Cheng,et al. DNA modification by methyltransferases. , 1995, Current opinion in structural biology.
[25] Wei Chen,et al. iRNA-AI: identifying the adenosine to inosine editing sites in RNA sequences , 2016, Oncotarget.
[26] L. Aravind,et al. DNA Methylation on N 6-Adenine in C . elegans Graphical Abstract Highlights , 2015 .
[27] K. Chou,et al. iRNA-Methyl: Identifying N(6)-methyladenosine sites using pseudo nucleotide composition. , 2015, Analytical biochemistry.
[28] K. Zhao,et al. Lsh, chromatin remodeling family member, modulates genome-wide cytosine methylation patterns at nonrepeat sequences , 2011, Proceedings of the National Academy of Sciences.
[29] Wei Chen,et al. iRNA-PseU: Identifying RNA pseudouridine sites , 2016, Molecular therapy. Nucleic acids.
[30] R J Roberts,et al. On base flipping , 1995, Cell.
[31] K. Chou. Impacts of bioinformatics to medicinal chemistry. , 2015, Medicinal chemistry (Shariqah (United Arab Emirates)).
[32] L. Aravind,et al. DNA Methylation on N6-Adenine in C. elegans , 2015, Cell.
[33] S. Turner,et al. Going beyond five bases in DNA sequencing. , 2012, Current opinion in structural biology.
[34] Richard J. Roberts,et al. REBASE—a database for DNA restriction and modification: enzymes, genes and genomes , 2009, Nucleic Acids Res..
[35] Howard Cedar,et al. Epigenetic mechanisms that regulate antigen receptor gene expression. , 2003, Current opinion in immunology.