Control of replication of bacterial plasmids: genetics, molecular biology, and physiology of the plasmid R1 system.

Plasmids are autonomously replicating DNA molecules that are present in defined copy numbers in bacteria. This number may for some plasmids be very low (2-5 per average cell). In order to be stably inherited, replication and partitioning of the plasmid have to be strictly controlled. Plasmids carry genetic information for both processes. In the present paper we summarize what is known about the replication control system of one low-copy-number plasmid, R1, belonging to the FII incompatibility group. We do so because the FII group seems to be one of the best understood examples with respect to genetics, molecular biology, and physiology of the replication control system. The paper is not a classical review, but rather an essay in which we discuss the aspects of replication control that we regard as being important.

[1]  K. Nordström,et al.  Replication of R-factor R1 in Scherichia coli K-12 at different growth rates , 1975, Journal of bacteriology.

[2]  Stanley N Cohen,et al.  Partitioning of bacterial plasmids during cell division: a cis-acting locus that accomplishes stable plasmid inheritance , 1980, Cell.

[3]  S. Cohen,et al.  Involvement of multiple translocating DNA segments and recombinational hotspots in the structural evolution of bacterial plasmids. , 1976, Journal of molecular biology.

[4]  S. Molin,et al.  How the R1 replication control system responds to copy number deviations. , 1984, Plasmid.

[5]  D. Helinski,et al.  Direct repeats of the F plasmid incC region express F incompatibility , 1981, Cell.

[6]  R. Curtiss,et al.  R6K Plasmid Replication: Influence of Chromosomal Genotype in Minicell-Producing Strains of Escherichia coli K-12 , 1974, Journal of bacteriology.

[7]  G. Cesareni,et al.  Base pairing of RNA I with its complementary sequence in the primer precursor inhibits ColE1 replication , 1981, Nature.

[8]  T. Ryder,et al.  Role of RNA transcripts in replication incompatibility and copy number control in antibiotic resistance plasmid derivatives , 1981, Nature.

[9]  S. Molin,et al.  Clustering of genes involved in replication, copy number control, incompatibility, and stable maintenance of the resistance plasmid R1drd-19 , 1979, Journal of bacteriology.

[10]  J. R. Scott,et al.  Incompatibility among group Y plasmids. , 1981, Plasmid.

[11]  K. Nordström,et al.  Plasmid incompatibility and control of replication: copy mutants of the R-factor R1 in Escherichia coli K-12 , 1975, Journal of bacteriology.

[12]  S. Molin,et al.  Molecular cloning and functional characterization of a copy number control gene (copB) of plasmid R1 , 1982, Journal of bacteriology.

[13]  D. Cress,et al.  Isolation and characterization of Escherichia coli chromosomal mutants affecting plasmid copy number , 1976, Journal of bacteriology.

[14]  R. H. Pritchard Control of DNA Replication in Bacteria , 1978 .

[15]  W. Maas,et al.  Inhibition of Replication of an F′lac Episome in Hfr Cells of Escherichia coli , 1968, Journal of Bacteriology.

[16]  T. Miki,et al.  Cloning of replication, incompatibility, and stability functions of R plasmid NR1 , 1980, Journal of bacteriology.

[17]  S. Molin,et al.  Convergent transcription interferes with expression of the copy number control gene, copA, from plasmid R1 , 1982, The EMBO journal.

[18]  K. Timmis,et al.  Regulation of DNA replication: "target" determinant of the replication control elements of plasmid R6-5 lies within a control element gene. , 1981, Proceedings of the National Academy of Sciences of the United States of America.

[19]  J. Perram,et al.  Selection and timing of replication of plasmids R1drd-19 and F'lac in Escherichia coli. , 1978, Plasmid.

[20]  S. Molin,et al.  Partitioning of plasmid R1 in Escherichia coli. I. Kinetics of loss of plasmid derivatives deleted of the par region. , 1980, Plasmid.

[21]  W. Goebel Studies on the initiation of plasmid DNA replication. , 1974, European journal of biochemistry.

[22]  M. Yoshikawa Identification and Mapping of the Replication Genes of an R Factor, R100-1, Integrated into the Chromosome of Escherichia coli K-12 , 1974, Journal of bacteriology.

[23]  Y. Hirota,et al.  Cloning and mapping of the replication origin of Escherichia coli. , 1977, Proceedings of the National Academy of Sciences of the United States of America.

[24]  S. Cooper,et al.  Chromosome replication and the division cycle of Escherichia coli B/r. , 1968, Journal of molecular biology.

[25]  R. Rownd Replication of a bacterial episome under relaxed control. , 1969, Journal of molecular biology.

[26]  M Meselson,et al.  THE REPLICATION OF DNA IN ESCHERICHIA COLI. , 1958, Proceedings of the National Academy of Sciences of the United States of America.

[27]  K. Arai,et al.  Definition of oriR, the minimum DNA segment essential for initiation of R1 plasmid replication in vitro. , 1983, Proceedings of the National Academy of Sciences of the United States of America.

[28]  K. Nordström,et al.  Control of Plasmid R1 Replication: Kinetics of Replication in Shifts Between Different Copy Number Levels , 1980, Journal of bacteriology.

[29]  K. Nordström,et al.  Random replication of the stringent plasmid R1 in Escherichia coli K-12 , 1975, Journal of bacteriology.

[30]  T. Itoh,et al.  Inhibition of ColE1 RNA primer formation by a plasmid-specified small RNA. , 1981, Proceedings of the National Academy of Sciences of the United States of America.

[31]  T. Ogura,et al.  Mini-F plasmid genes that couple host cell division to plasmid proliferation. , 1983, Proceedings of the National Academy of Sciences of the United States of America.

[32]  G. Churchward,et al.  The repA2 gene of the plasmid R100.1 encodes a repressor of plasmid replication. , 1983, Plasmid.

[33]  K. Nordström,et al.  Plasmid R1 DNA replication dependent on protein synthesis in cell-free extracts of E. coli , 1981, Nature.

[34]  K. Nordström,et al.  Mutations in R Factors of Escherichia coli Causing an Increased Number of R-Factor Copies per Chromosome , 1972, Journal of bacteriology.

[35]  J. Rosner Formation, induction, and curing of bacteriophage P1 lysogens. , 1972, Virology.

[36]  R. Kolter,et al.  Nucleotide sequence of the region of an origin of replication of the antibiotic resistance plasmid R6K. , 1979, Proceedings of the National Academy of Sciences of the United States of America.

[37]  R. H. Pritchard Review lecture on the growth and form of a bacterial cell. , 1974, Philosophical transactions of the Royal Society of London. Series B, Biological sciences.

[38]  S. Molin,et al.  Post‐transcriptional control of expression of the repA gene of plasmid R1 mediated by a small RNA molecule. , 1983, The EMBO journal.

[39]  T. Ryder,et al.  Analysis of plasmid genome evolution based on nucleotide-sequence comparison of two related plasmids of Escherichia coli. , 1982, Gene.

[40]  W. Donachie,et al.  Relationship between Cell Size and Time of Initiation of DNA Replication , 1968, Nature.

[41]  S. Molin,et al.  Expression of a copy number control gene (copB) of plasmid R1 is constitutive and growth rate dependent , 1982, Journal of bacteriology.

[42]  D. Berg Genes of phage ? essential for ?dv plasmids , 1974 .

[43]  S. Molin,et al.  Control of Plasmid R1 Replication: Functions Involved in Replication, Copy Number Control, Incompatibility, and Switch-off of Replication , 1980, Journal of bacteriology.

[44]  N. Datta,et al.  Mutant Drug Resistant Factors of High Transmissibility , 1967, Nature.

[45]  M. Brawner,et al.  Identification of polypeptides encoded by the replication region of resistance factor R100 , 1982 .

[46]  K. Timmis,et al.  Replication control mutations of plasmid R6-5 and their effects on interactions of the RNA-I control element with its target , 1983, Journal of bacteriology.

[47]  J. Tamm,et al.  A single base-pair alteration is responsible for the DNA overproduction phenotype of a plasmid copy-number mutant , 1981, Cell.

[48]  G. Cesareni,et al.  Control of ColE1 DNA replication: the rop gene product negatively affects transcription from the replication primer promoter. , 1982, Proceedings of the National Academy of Sciences of the United States of America.

[49]  K. Matsubara,et al.  Replication Control and Switch-Off Function as Observed with a Mini-F Factor Plasmid , 1981, Journal of bacteriology.