Temporal Feature Extraction from DCE-MRI to Identify Poorly Perfused Subvolumes of Tumors Related to Outcomes of Radiation Therapy in Head and Neck Cancer

This study aimed to develop an automated model to extract temporal features from DCE-MRI in head-and-neck (HN) cancers to localize significant tumor subvolumes having low blood volume (LBV) for predicting local and regional failure after chemoradiation therapy. Temporal features were extracted from time-intensity curves to build classification model for differentiating voxels with LBV from those with high BV. Support vector machine (SVM) classification was trained on the extracted features for voxel classification. Subvolumes with LBV were then assembled from the classified voxels with LBV. The model was trained and validated on independent datasets created from 456 873 DCE curves. The resultant subvolumes were compared to ones derived by a 2-step method via pharmacokinetic modeling of blood volume, and evaluated for classification accuracy and volumetric similarity by DSC. The proposed model achieved an average voxel-level classification accuracy and DSC of 82% and 0.72, respectively. Also, the model showed tolerance on different acquisition parameters of DCE-MRI. The model could be directly used for outcome prediction and therapy assessment in radiation therapy of HN cancers, or even supporting boost target definition in adaptive clinical trials with further validation. The model is fully automatable, extendable, and scalable to extract temporal features of DCE-MRI in other tumors.

[1]  H. Degani,et al.  Principal component analysis of breast DCE‐MRI adjusted with a model‐based method , 2009, Journal of magnetic resonance imaging : JMRI.

[2]  Thomas E Yankeelov,et al.  Dynamic Contrast Enhanced Magnetic Resonance Imaging in Oncology: Theory, Data Acquisition, Analysis, and Examples. , 2007, Current medical imaging reviews.

[3]  Yue Cao,et al.  DCE-MRI defined subvolumes of a brain metastatic lesion by principle component analysis and fuzzy-c-means clustering for response assessment of radiation therapy. , 2013, Medical physics.

[4]  Sean C. Smart,et al.  Wavelet-based cluster analysis: data-driven grouping of voxel time courses with application to perfusion-weighted and pharmacological MRI of the rat brain , 2005, NeuroImage.

[5]  Paul Kinahan,et al.  Radiomics: Images Are More than Pictures, They Are Data , 2015, Radiology.

[6]  M. Knopp,et al.  Estimating kinetic parameters from dynamic contrast‐enhanced t1‐weighted MRI of a diffusable tracer: Standardized quantities and symbols , 1999, Journal of magnetic resonance imaging : JMRI.

[7]  B. Nicolas Bloch,et al.  Principal Component Analysis of Dynamic Contrast Enhanced MRI in Human Prostate Cancer , 2010, Investigative radiology.

[8]  Christopher M. Bishop,et al.  Pattern Recognition and Machine Learning (Information Science and Statistics) , 2006 .

[9]  Corinna Cortes,et al.  Support-Vector Networks , 1995, Machine Learning.

[10]  D. Balvayb,et al.  Perfusion and vascular permeability : Basic concepts and measurement in DCE-CT and DCE-MRI , 2013 .

[11]  Peng Wang,et al.  An approach to identify, from DCE MRI, significant subvolumes of tumors related to outcomes in advanced head-and-neck cancer. , 2012, Medical physics.

[12]  Amy C. Dwyer,et al.  Models and methods for analyzing DCE-MRI: a review. , 2014, Medical physics.

[13]  P. Lambin,et al.  Machine Learning methods for Quantitative Radiomic Biomarkers , 2015, Scientific Reports.

[14]  Yue Cao,et al.  The promise of dynamic contrast-enhanced imaging in radiation therapy. , 2011, Seminars in radiation oncology.

[15]  Ron Kikinis,et al.  Statistical validation of image segmentation quality based on a spatial overlap index. , 2004, Academic radiology.

[16]  Arvid Lundervold,et al.  Wavelet-based segmentation of renal compartments in DCE-MRI of human kidney: Initial results in patients and healthy volunteers , 2012, Comput. Medical Imaging Graph..

[17]  James S. Walker,et al.  A Primer on Wavelets and Their Scientific Applications , 1999 .

[18]  Huan Liu,et al.  Feature Selection for Classification: A Review , 2014, Data Classification: Algorithms and Applications.

[19]  Chih-Jen Lin,et al.  LIBSVM: A library for support vector machines , 2011, TIST.

[20]  Ian H. Witten,et al.  The WEKA data mining software: an update , 2009, SKDD.

[21]  Y. Liu,et al.  Radiomic Features Are Associated With EGFR Mutation Status in Lung Adenocarcinomas. , 2016, Clinical lung cancer.

[22]  Huan Liu,et al.  Feature selection for classification: A review , 2014 .