With the advent of new Multi-Electrode Arrays techniques (MEA), the simultaneous recording of the activity up to hundreds of neurons over a dense configuration supplies today a critical database to unravel the role of specific neural assemblies. Thus, the analysis of spike trains obtained from in vivo or in vitro experimental data requires suitable statistical models and computational tools. The EnaS software, developed by our team, offers new computational methods of spike train statistics, based on Gibbs distributions (in its more general sense, including, but not limited, to the Maximal Entropy - MaxEnt) and taking into account time constraints in neural networks (such as memory effects). It also offers several statistical model choices, some of these models already used in the community (such as the conditional intensity models [5]), and some others developed by us ([1] and [2]), and allows a quantitative comparison between these models. It also offers a control of finite-size sampling effects inherent to empirical statistics.
[1]
E J Chichilnisky,et al.
Prediction and Decoding of Retinal Ganglion Cell Responses with a Probabilistic Spiking Model
,
2005,
The Journal of Neuroscience.
[2]
Bruno Cessac,et al.
Spatio-temporal spike train analysis for large scale networks using the maximum entropy principle and Monte Carlo method
,
2012,
1209.3886.
[3]
Michael J. Berry,et al.
Gibbs distribution analysis of temporal correlations structure in retina ganglion cells
,
2011,
Journal of Physiology - Paris.
[4]
Michael J. Berry,et al.
Weak pairwise correlations imply strongly correlated network states in a neural population
,
2005,
Nature.
[5]
Liam Paninski,et al.
Efficient Markov Chain Monte Carlo Methods for Decoding Neural Spike Trains
,
2011,
Neural Computation.