The task force that rescues stalled ribosomes in bacteria.
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[1] Daniel N. Wilson,et al. The ribosomal tunnel as a functional environment for nascent polypeptide folding and translational stalling. , 2011, Current opinion in structural biology.
[2] R. Sauer,et al. SsrA‐mediated peptide tagging caused by rare codons and tRNA scarcity , 1999, The EMBO journal.
[3] Kirsten Jung,et al. Translation Elongation Factor EF-P Alleviates Ribosome Stalling at Polyproline Stretches , 2013, Science.
[4] RelBE or not to be , 2005, Nature Structural &Molecular Biology.
[5] T. Inada,et al. Nascent-peptide-mediated ribosome stalling at a stop codon induces mRNA cleavage resulting in nonstop mRNA that is recognized by tmRNA. , 2004, RNA.
[6] David W. Healey,et al. SmpB contributes to reading frame selection in the translation of transfer-messenger RNA. , 2009, Journal of molecular biology.
[7] A. W. Karzai,et al. A previously uncharacterized role for small protein B (SmpB) in transfer messenger RNA-mediated trans-translation. , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[8] J. Frank,et al. Visualizing tmRNA Entry into a Stalled Ribosome , 2003, Science.
[9] C. Hayes,et al. Amino acid starvation and colicin D treatment induce A-site mRNA cleavage in Escherichia coli. , 2008, Journal of molecular biology.
[10] Robert T Sauer,et al. Ribosome rescue: tmRNA tagging activity and capacity in Escherichia coli , 2005, Molecular microbiology.
[11] H. Aiba,et al. Cleavage of mRNAs and role of tmRNA system under amino acid starvation in Escherichia coli , 2008, Molecular microbiology.
[12] Daniel N. Wilson,et al. Nascent peptides that block protein synthesis in bacteria , 2013, Proceedings of the National Academy of Sciences.
[13] C. Hayes,et al. RNase II is important for A‐site mRNA cleavage during ribosome pausing , 2009, Molecular microbiology.
[14] A. Muto,et al. Interaction of SmpB with ribosome from directed hydroxyl radical probing , 2007, Nucleic acids research.
[15] C. Dean,et al. Elongation Factor P is Dispensable in Escherichia coli and Pseudomonas aeruginosa , 2013, Current Microbiology.
[16] T. Abo,et al. Escherichia coli YaeJ protein mediates a novel ribosome‐rescue pathway distinct from SsrA‐ and ArfA‐mediated pathways , 2011, Molecular microbiology.
[17] Koreaki Ito,et al. Divergent stalling sequences sense and control cellular physiology. , 2010, Biochemical and biophysical research communications.
[18] Yan Qin,et al. Elongation factor 4 (EF4/LepA) accelerates protein synthesis at increased Mg2+ concentrations , 2011, Proceedings of the National Academy of Sciences.
[19] M. Ehrenberg,et al. Ribosome rescue by tmRNA requires truncated mRNAs. , 2004, Journal of molecular biology.
[20] Shigeyuki Yokoyama,et al. Structural basis for functional mimicry of long-variable-arm tRNA by transfer-messenger RNA , 2007, Proceedings of the National Academy of Sciences.
[21] V. Ramakrishnan,et al. What recent ribosome structures have revealed about the mechanism of translation , 2009, Nature.
[22] B. Felden,et al. tmRNA–SmpB: a journey to the centre of the bacterial ribosome , 2010, The EMBO journal.
[23] T. Abo,et al. ArfA recruits release factor 2 to rescue stalled ribosomes by peptidyl‐tRNA hydrolysis in Escherichia coli , 2012, Molecular microbiology.
[24] T. Steitz,et al. Formation of the First Peptide Bond: The Structure of EF-P Bound to the 70S Ribosome , 2009, Science.
[25] A. Muto,et al. A functional interaction of SmpB with tmRNA for determination of the resuming point of trans-translation. , 2007, RNA.
[26] M. Ganoza,et al. Identification of a soluble protein that stimulates peptide bond synthesis. , 1975, Proceedings of the National Academy of Sciences of the United States of America.
[27] P. Ivanov,et al. The complex of tmRNA–SmpB and EF-G on translocating ribosomes , 2012, Nature.
[28] B. Felden,et al. SmpB as the handyman of tmRNA during trans-translation , 2011, RNA biology.
[29] Y. Handa,et al. YaeJ is a novel ribosome-associated protein in Escherichia coli that can hydrolyze peptidyl–tRNA on stalled ribosomes , 2010, Nucleic acids research.
[30] U. Varshney,et al. Recycling of ribosomal complexes stalled at the step of elongation in Escherichia coli. , 2008, Journal of molecular biology.
[31] T. Inada. Quality control systems for aberrant mRNAs induced by aberrant translation elongation and termination. , 2013, Biochimica et biophysica acta.
[32] B. Séraphin,et al. Surveillance pathways rescuing eukaryotic ribosomes lost in translation , 2012, Nature Reviews Molecular Cell Biology.
[33] M. Ehrenberg,et al. tmRNA.SmpB complex mimics native aminoacyl-tRNAs in the A site of stalled ribosomes. , 2010, Journal of structural biology.
[34] Koreaki Ito,et al. Peptidyl-prolyl-tRNA at the ribosomal P-site reacts poorly with puromycin. , 2008, Biochemical and biophysical research communications.
[35] K. Bhardwaj,et al. Function of the SmpB Tail in Transfer-messenger RNA Translation Revealed by a Nucleus-encoded Form* , 2005, Journal of Biological Chemistry.
[36] Brice Felden,et al. Crystal structure of the transfer-RNA domain of transfer-messenger RNA in complex with SmpB , 2003, Nature.
[37] B. Felden,et al. The highest affinity binding site of small protein B on transfer messenger RNA is outside the tRNA domain. , 2008, RNA.
[38] T. Steitz,et al. Structural Basis for the Rescue of Stalled Ribosomes: Structure of YaeJ Bound to the Ribosome , 2012, Science.
[39] R. Sauer,et al. The tmRNA system for translational surveillance and ribosome rescue. , 2007, Annual review of biochemistry.
[40] T. Abo,et al. Ribosome rescue by Escherichia coli ArfA (YhdL) in the absence of trans‐translation system , 2010, Molecular microbiology.
[41] J. de la Cruz,et al. Trans-translation and protein synthesis inhibitors. , 2003, FEMS microbiology letters.
[42] H. Aiba,et al. Protein tagging at rare codons is caused by tmRNA action at the 3' end of nonstop mRNA generated in response to ribosome stalling. , 2005, RNA.
[43] C. J. Woolstenhulme,et al. The mechanism by which tmRNA rescues stalled ribosomes , 2011 .
[44] N. Ban,et al. Trigger factor in complex with the ribosome forms a molecular cradle for nascent proteins , 2004, Nature.
[45] U. Varshney,et al. A physiological connection between tmRNA and peptidyl-tRNA hydrolase functions in Escherichia coli. , 2004, Nucleic acids research.
[46] C. Hayes,et al. Proteobacterial ArfA Peptides Are Synthesized from Non-stop Messenger RNAs* , 2012, The Journal of Biological Chemistry.
[47] Daniel N. Wilson,et al. Dissection of the mechanism for the stringent factor RelA. , 2002, Molecular cell.
[48] U. Varshney,et al. Peptidyl-tRNA hydrolase and its critical role in protein biosynthesis. , 2006, Microbiology.
[49] H. Aiba,et al. Reduced action of polypeptide release factors induces mRNA cleavage and tmRNA tagging at stop codons in Escherichia coli , 2007, Molecular microbiology.
[50] A. Kelley,et al. Decoding in the Absence of a Codon by tmRNA and SmpB in the Ribosome , 2012, Science.
[51] C. Hayes,et al. Beyond ribosome rescue: tmRNA and co‐translational processes , 2010, FEBS letters.
[52] Paul C. Whitford,et al. 1 Supplemental Information , 2008 .
[53] Gene-Wei Li,et al. The anti-Shine-Dalgarno sequence drives translational pausing and codon choice in bacteria , 2012, Nature.
[54] Henning Urlaub,et al. EF-P Is Essential for Rapid Synthesis of Proteins Containing Consecutive Proline Residues , 2013, Science.
[55] K. Gerdes,et al. Toxin-antitoxin loci as stress-response-elements: ChpAK/MazF and ChpBK cleave translated RNAs and are counteracted by tmRNA. , 2003, Journal of molecular biology.
[56] Z. Vogel,et al. The protection by 70 S ribosomes of N-acyl-aminoacyl-tRNA against cleavage by peptidyl-tRNA hydrolase and its use to assay ribosomal association. , 1971, European journal of biochemistry.
[57] R. Sauer,et al. Cleavage of the A site mRNA codon during ribosome pausing provides a mechanism for translational quality control. , 2003, Molecular cell.
[58] Måns Ehrenberg,et al. The Bacterial Toxin RelE Displays Codon-Specific Cleavage of mRNAs in the Ribosomal A Site , 2003, Cell.
[59] David W. Healey,et al. The role of upstream sequences in selecting the reading frame on tmRNA , 2008, BMC Biology.
[60] H. Himeno,et al. Determinants on tmRNA for initiating efficient and precise trans-translation: some mutations upstream of the tag-encoding sequence of Escherichia coli tmRNA shift the initiation point of trans-translation in vitro. , 2001, RNA.
[61] H. Inokuchi,et al. Bacterial SsrA system plays a role in coping with unwanted translational readthrough caused by suppressor tRNAs , 2002, Genes to cells : devoted to molecular & cellular mechanisms.
[62] R. Sauer,et al. Proline Residues at the C Terminus of Nascent Chains Induce SsrA Tagging during Translation Termination* 210 , 2002, The Journal of Biological Chemistry.
[63] D. Bartel,et al. Resuming translation on tmRNA: a unique mode of determining a reading frame , 1999, The EMBO journal.
[64] R. Sauer,et al. Role of a Peptide Tagging System in Degradation of Proteins Synthesized from Damaged Messenger RNA , 1996, Science.
[65] K. Gerdes,et al. RelE toxins from Bacteria and Archaea cleave mRNAs on translating ribosomes, which are rescued by tmRNA , 2003, Molecular microbiology.
[66] K. Nierhaus,et al. Three mechanisms in Escherichia coli rescue ribosomes stalled on non‐stop mRNAs: one of them requires release factor 2 , 2012, Molecular microbiology.
[67] J. Frank,et al. Cryo-EM visualization of transfer messenger RNA with two SmpBs in a stalled ribosome , 2006, Proceedings of the National Academy of Sciences.
[68] T. Abo,et al. SsrA‐mediated protein tagging in the presence of miscoding drugs and its physiological role in Escherichia coli , 2002, Genes to cells : devoted to molecular & cellular mechanisms.
[69] J. Frank,et al. Scaffolding as an Organizing Principle in Trans-translation , 2007, Journal of Biological Chemistry.
[70] A. Kaji,et al. Protein synthesis factors (RF1, RF2, RF3, RRF, and tmRNA) and peptidyl-tRNA hydrolase rescue stalled ribosomes at sense codons. , 2012, Journal of molecular biology.
[71] C. Hayes,et al. tmRNA regulates synthesis of the ArfA ribosome rescue factor , 2011, Molecular microbiology.
[72] C. Hayes,et al. Kinetics of paused ribosome recycling in Escherichia coli. , 2009, Journal of molecular biology.
[73] T. Abo,et al. trans-translation-mediated tight regulation of the expression of the alternative ribosome-rescue factor ArfA in Escherichia coli. , 2011, Genes & genetic systems.
[74] T. Abo,et al. Nascentome Analysis Uncovers Futile Protein Synthesis in Escherichia coli , 2011, PloS one.
[75] G. Dong,et al. Structure of small protein B: the protein component of the tmRNA–SmpB system for ribosome rescue , 2002, The EMBO journal.
[76] R. Green,et al. Getting Past Polyproline Pauses , 2013, Science.
[77] V. Ramakrishnan,et al. The Structural Basis for mRNA Recognition and Cleavage by the Ribosome-Dependent Endonuclease RelE , 2009, Cell.
[78] Y. Shimizu. ArfA recruits RF2 into stalled ribosomes. , 2012, Journal of molecular biology.
[79] S. Yokoyama,et al. Solution structure of a tmRNA‐binding protein, SmpB, from Thermus thermophilus , 2003, FEBS letters.
[80] Christian Zwieb,et al. Visualizing the transfer-messenger RNA as the ribosome resumes translation , 2010, The EMBO journal.
[81] R. Sauer,et al. Identification of Endogenous SsrA-tagged Proteins Reveals Tagging at Positions Corresponding to Stop Codons* , 2001, The Journal of Biological Chemistry.
[82] Sabine Petry,et al. Insights into Translational Termination from the Structure of RF2 Bound to the Ribosome , 2008, Science.
[83] B. Felden,et al. Accommodation of tmRNA-SmpB into stalled ribosomes: a cryo-EM study. , 2010, RNA.