A CD8 T cell transcription signature predicts prognosis in autoimmune disease

[1]  B. Jallal,et al.  Biomarkers for systemic lupus erythematosus , 2012, International journal of rheumatic diseases.

[2]  Kenneth G. C. Smith,et al.  Novel expression signatures identified by transcriptional analysis of separated leucocyte subsets in systemic lupus erythematosus and vasculitis , 2009, Annals of the rheumatic diseases.

[3]  G. Smyth,et al.  Detection of Gene Expression in an Individual Cell Type within a Cell Mixture Using Microarray Analysis , 2009, PloS one.

[4]  Rustom Antia,et al.  Memory CD8 T-cell compartment grows in size with immunological experience , 2009, Nature.

[5]  M. Petri,et al.  An update on mortality in systemic lupus erythematosus. , 2008, Clinical and experimental rheumatology.

[6]  Kenneth G. C. Smith,et al.  Copy number of FCGR3B, which is associated with systemic lupus erythematosus, correlates with protein expression and immune complex uptake , 2008, The Journal of experimental medicine.

[7]  R. Bernards,et al.  Enabling personalized cancer medicine through analysis of gene-expression patterns , 2008, Nature.

[8]  Nikhil S. Joshi,et al.  Effector CD8 T Cell Development: A Balancing Act between Memory Cell Potential and Terminal Differentiation1 , 2008, The Journal of Immunology.

[9]  C. Kallenberg,et al.  CD4‐Positive Effector Memory T Cells Participate in Disease Expression in ANCA‐Associated Vasculitis , 2007, Annals of the New York Academy of Sciences.

[10]  M. Bevan,et al.  Effector and memory CTL differentiation. , 2007, Annual review of immunology.

[11]  Kenneth G. C. Smith,et al.  Microarray analysis of human leucocyte subsets: the advantages of positive selection and rapid purification , 2007, BMC Genomics.

[12]  M. Tolaini,et al.  Do CD8 effector cells need IL-7R expression to become resting memory cells? , 2006, Blood.

[13]  Tom C. Freeman,et al.  An open-access long oligonucleotide microarray resource for analysis of the human and mouse transcriptomes , 2006, Nucleic acids research.

[14]  R. Falk,et al.  Pathogenesis of vascular inflammation by anti-neutrophil cytoplasmic antibodies. , 2006, Journal of the American Society of Nephrology : JASN.

[15]  Andrew J. McMichael,et al.  Molecular Signatures Distinguish Human Central Memory from Effector Memory CD8 T Cell Subsets1 , 2005, The Journal of Immunology.

[16]  Aurora Torrente,et al.  A new algorithm for comparing and visualizing relationships between hierarchical and flat gene expression data clusterings , 2005, Bioinform..

[17]  Pablo Tamayo,et al.  Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles , 2005, Proceedings of the National Academy of Sciences of the United States of America.

[18]  P. Lamprecht Off balance: T‐cells in antineutrophil cytoplasmic antibody (ANCA)‐associated vasculitides , 2005, Clinical and experimental immunology.

[19]  D. Scott,et al.  Primary systemic vasculitis: clinical features and mortality. , 2005, QJM : monthly journal of the Association of Physicians.

[20]  J. Moreau,et al.  Increase in activated CD8+ T lymphocytes expressing perforin and granzyme B correlates with disease activity in patients with systemic lupus erythematosus. , 2005, Arthritis and rheumatism.

[21]  C. Molony,et al.  Genetic analysis of genome-wide variation in human gene expression , 2004, Nature.

[22]  M. Bevan Helping the CD8+ T-cell response , 2004, Nature Reviews Immunology.

[23]  Yudong D. He,et al.  T lymphocyte activation gene identification by coregulated expression on DNA microarrays. , 2004, Genomics.

[24]  Jill P. Mesirov,et al.  Consensus Clustering: A Resampling-Based Method for Class Discovery and Visualization of Gene Expression Microarray Data , 2003, Machine Learning.

[25]  C. Langford Antineutrophil cytoplasmic antibodies should not be used to guide treatment in Wegener's granulomatosis. , 2004, Clinical and experimental rheumatology.

[26]  A. Strasser,et al.  Shutdown of an acute T cell immune response to viral infection is mediated by the proapoptotic Bcl-2 homology 3-only protein Bim , 2003, Proceedings of the National Academy of Sciences of the United States of America.

[27]  C. Pusey,et al.  Outcome of ANCA-associated renal vasculitis: a 5-year retrospective study. , 2003, American journal of kidney diseases : the official journal of the National Kidney Foundation.

[28]  Leo Lefrançois,et al.  Cytokine control of memory T-cell development and survival , 2003, Nature Reviews Immunology.

[29]  Jill P. Mesirov,et al.  A resampling-based method for class discovery and visualization of gene expression microarray data , 2003 .

[30]  Yudong D. He,et al.  A Gene-Expression Signature as a Predictor of Survival in Breast Cancer , 2002 .

[31]  Yudong D. He,et al.  Gene expression profiling predicts clinical outcome of breast cancer , 2002, Nature.

[32]  D. Franchimont,et al.  Gene profiling reveals unknown enhancing and suppressive actions of glucocorticoids on immune cells , 2002, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.

[33]  P. Merkel,et al.  A disease-specific activity index for Wegener's granulomatosis: modification of the Birmingham Vasculitis Activity Score. International Network for the Study of the Systemic Vasculitides (INSSYS). , 2001, Arthritis and rheumatism.

[34]  Ash A. Alizadeh,et al.  Distinct types of diffuse large B-cell lymphoma identified by gene expression profiling , 2000, Nature.

[35]  J. Mesirov,et al.  Molecular classification of cancer: class discovery and class prediction by gene expression monitoring. , 1999, Science.

[36]  F. Sallusto,et al.  Two subsets of memory T lymphocytes with distinct homing potentials and effector functions , 1999, Nature.

[37]  Peter C. Doherty,et al.  Virus-specific CD8+ T-cell memory determined by clonal burst size , 1994, Nature.

[38]  J F Fries,et al.  The 1982 revised criteria for the classification of systemic lupus erythematosus. , 1982, Arthritis and rheumatism.