Methodological improvements in voxel‐based analysis of diffusion tensor images: Applications to study the impact of apolipoprotein E on white matter integrity

To identify regional differences in apparent diffusion coefficient (ADC) and fractional anisotropy (FA) using customized preprocessing before voxel‐based analysis (VBA) in 14 normal subjects with the specific genes that decrease (apolipoprotein [APO] E ε2) and that increase (APOE ε4) the risk of Alzheimer's disease.

[1]  Carole Dufouil,et al.  No epsilon4 gene dose effect on hippocampal atrophy in a large MRI database of healthy elderly subjects. , 2005, NeuroImage.

[2]  M. Kaps,et al.  Structural Brain Abnormalities in Patients with Parkinson Disease: A Comparative Voxel-Based Analysis Using T1-Weighted MR Imaging and Magnetization Transfer Imaging , 2011, American Journal of Neuroradiology.

[3]  Karl J. Friston,et al.  Statistical parametric maps in functional imaging: A general linear approach , 1994 .

[4]  M. Filippi,et al.  White matter damage in Alzheimer's disease assessed in vivo using diffusion tensor magnetic resonance imaging , 2002, Journal of neurology, neurosurgery, and psychiatry.

[5]  Michael Brady,et al.  Improved Optimization for the Robust and Accurate Linear Registration and Motion Correction of Brain Images , 2002, NeuroImage.

[6]  L Nyberg,et al.  Altered brain white matter integrity in healthy carriers of the APOE epsilon4 allele: a risk for AD? , 2006, Neurology.

[7]  Stephen M Smith,et al.  Fast robust automated brain extraction , 2002, Human brain mapping.

[8]  Jan Sijbers,et al.  Comparing isotropic and anisotropic smoothing for voxel‐based DTI analyses: A simulation study , 2009, Human brain mapping.

[9]  Agatha D. Lee,et al.  Apolipoprotein E genotype is associated with temporal and hippocampal atrophy rates in healthy elderly adults: a tensor-based morphometry study. , 2011, Journal of Alzheimer's disease : JAD.

[10]  A D Roses,et al.  Apolipoprotein E and Alzheimer's Disease A Rapidly Expanding Field with Medical and Epidemiological Consequences , 1996, Annals of the New York Academy of Sciences.

[11]  Mara Cercignani,et al.  Twenty‐five pitfalls in the analysis of diffusion MRI data , 2010, NMR in biomedicine.

[12]  Moo K. Chung,et al.  A study of diffusion tensor imaging by tissue-specific, smoothing-compensated voxel-based analysis , 2009, NeuroImage.

[13]  P. Barker,et al.  Diffusion magnetic resonance imaging: Its principle and applications , 1999, The Anatomical record.

[14]  R. Honea,et al.  Impact of APOE on the healthy aging brain: a voxel-based MRI and DTI study. , 2009, Journal of Alzheimer's disease : JAD.

[15]  Jean-Philippe Thirion,et al.  Image matching as a diffusion process: an analogy with Maxwell's demons , 1998, Medical Image Anal..

[16]  Karl J. Friston,et al.  Voxel-Based Morphometry—The Methods , 2000, NeuroImage.

[17]  Derek K. Jones,et al.  The effect of filter size on VBM analyses of DT-MRI data , 2005, NeuroImage.

[18]  Usha Sinha,et al.  Exploratory voxel-based analysis of diffusion indices and hemispheric asymmetry in normal aging. , 2007, Magnetic resonance imaging.

[19]  A. Brun,et al.  A white matter disorder in dementia of the Alzheimer type: A pathoanatomical study , 1986, Annals of neurology.

[20]  Qiyong Gong,et al.  Microstructural brain abnormalities in patients with obsessive-compulsive disorder: diffusion-tensor MR imaging study at 3.0 T. , 2011, Radiology.

[21]  Andrew J. Saykin,et al.  Regional brain atrophy in cognitively intact adults with a single APOE ε4 allele , 2006, Neurology.

[22]  Jim Mintz,et al.  Apolipoprotein E genotype and age-related myelin breakdown in healthy individuals: implications for cognitive decline and dementia. , 2006, Archives of general psychiatry.

[23]  John J Sidtis,et al.  Abnormal white matter integrity in healthy apolipoprotein E epsilon4 carriers , 2005, Neuroreport.

[24]  S. Schoenberg,et al.  White matter damage in Alzheimer disease and mild cognitive impairment: assessment with diffusion-tensor MR imaging and parallel imaging techniques. , 2007, Radiology.

[25]  G. Bartzokis Alzheimer's disease as homeostatic responses to age-related myelin breakdown , 2011, Neurobiology of Aging.

[26]  Federico Giove,et al.  Smoothing that does not blur: Effects of the anisotropic approach for evaluating diffusion tensor imaging data in the clinic , 2010, Journal of magnetic resonance imaging : JMRI.

[27]  L. Rudin,et al.  Nonlinear total variation based noise removal algorithms , 1992 .

[28]  J. E. Tanner,et al.  Spin diffusion measurements : spin echoes in the presence of a time-dependent field gradient , 1965 .

[29]  Brian B. Avants,et al.  High-Dimensional Spatial Normalization of Diffusion Tensor Images Improves the Detection of White Matter Differences: An Example Study Using Amyotrophic Lateral Sclerosis , 2007, IEEE Transactions on Medical Imaging.

[30]  J. Dukart,et al.  Age Correction in Dementia – Matching to a Healthy Brain , 2011, PloS one.

[31]  Daniel Rueckert,et al.  Tract-based spatial statistics: Voxelwise analysis of multi-subject diffusion data , 2006, NeuroImage.

[32]  S. Rose,et al.  Gray and white matter changes in Alzheimer's disease: A diffusion tensor imaging study , 2008, Journal of magnetic resonance imaging : JMRI.

[33]  Mark S. Cohen,et al.  Patterns of brain activation in people at risk for Alzheimer's disease. , 2000, The New England journal of medicine.

[34]  Gaby S Pell,et al.  Voxel-based relaxometry: a new approach for analysis of T2 relaxometry changes in epilepsy , 2004, NeuroImage.

[35]  Paul M. Thompson,et al.  Tensor-Based Analysis of Genetic Influences on Brain Integrity Using DTI in 100 Twins , 2009, MICCAI.

[36]  Karl J. Friston,et al.  Voxel-based morphometry of the human brain: Methods and applications , 2005 .

[37]  Marco Bozzali,et al.  Diffusion tensor MRI to investigate dementias: a brief review. , 2007, Magnetic resonance imaging.

[38]  G J M Parker,et al.  Analysis of MR diffusion weighted images. , 2004, The British journal of radiology.

[39]  Jitendra Malik,et al.  Scale-Space and Edge Detection Using Anisotropic Diffusion , 1990, IEEE Trans. Pattern Anal. Mach. Intell..

[40]  Richard S. Frackowiak,et al.  Regional specificity of MRI contrast parameter changes in normal ageing revealed by voxel-based quantification (VBQ) , 2011, NeuroImage.

[41]  Tony F. Chan,et al.  Total Variation Regularization of Matrix-Valued Images , 2007, Int. J. Biomed. Imaging.

[42]  D. Le Bihan,et al.  Diffusion tensor imaging: Concepts and applications , 2001, Journal of magnetic resonance imaging : JMRI.

[43]  Peter Gruen,et al.  Novel diffusion tensor imaging methodology to detect and quantify injured regions and affected brain pathways in traumatic brain injury. , 2010, Magnetic resonance imaging.

[44]  H. Yamasue,et al.  Voxel-based analysis of the diffusion tensor , 2010, Neuroradiology.

[45]  Lawrence R. Frank,et al.  Decreased white matter integrity in late-myelinating fiber pathways in Alzheimer's disease supports retrogenesis , 2009, NeuroImage.

[46]  Carole Dufouil,et al.  No ɛ4 gene dose effect on hippocampal atrophy in a large MRI database of healthy elderly subjects , 2005, NeuroImage.

[47]  L Nyberg,et al.  Altered brain white matter integrity in healthy carriers of the APOE ε4 allele , 2006, Neurology.

[48]  Bin Chen,et al.  Noise removal in magnetic resonance diffusion tensor imaging , 2005, Magnetic resonance in medicine.

[49]  H. Braak,et al.  Neuropathological stageing of Alzheimer-related changes , 2004, Acta Neuropathologica.

[50]  Derek K. Jones,et al.  Spatial Normalization and Averaging of Diffusion Tensor MRI Data Sets , 2002, NeuroImage.

[51]  Peter J Basser,et al.  Observation of restricted diffusion in the presence of a free diffusion compartment: single- and double-PFG experiments. , 2009, Journal of magnetic resonance.

[52]  G J Tsongalis,et al.  Regional brain atrophy in cognitively intact adults with a single APOE epsilon4 allele. , 2006, Neurology.

[53]  D. Bennett,et al.  White matter changes in mild cognitive impairment and AD: A diffusion tensor imaging study , 2006, Neurobiology of Aging.

[54]  Usha Sinha,et al.  Statistical representation of mean diffusivity and fractional anisotropy brain maps of normal subjects , 2006, Journal of magnetic resonance imaging : JMRI.