Bacterial defenses against oxidants: mechanistic features of cysteine-based peroxidases and their flavoprotein reductases.

Antioxidant defenses include a group of ubiquitous, non-heme peroxidases, designated the peroxiredoxins, which rely on an activated cysteine residue at their active site to catalyze the reduction of hydrogen peroxide, organic hydroperoxides, and peroxynitrite. In the typical 2-Cys peroxiredoxins, a second cysteinyl residue, termed the resolving cysteine, is also involved in intersubunit disulfide bond formation during the course of catalysis by these enzymes. Many bacteria also express a flavoprotein, AhpF, which acts as a dedicated disulfide reductase to recycle the bacterial peroxiredoxin, AhpC, during catalysis. Mechanistic and structural studies of these bacterial proteins have shed light on the linkage between redox state, oligomeric state, and peroxidase activity for the peroxiredoxins, and on the conformational changes accompanying catalysis by both proteins. In addition, these studies have highlighted the dual roles that the oxidized cysteinyl species, cysteine sulfenic acid, can play in eukaryotic peroxiredoxins, acting as a catalytic intermediate in the peroxidase activity, and as a redox sensor in regulating hydrogen peroxide-mediated cell signaling.

[1]  S. Rhee,et al.  Mammalian Peroxiredoxin Isoforms Can Reduce Hydrogen Peroxide Generated in Response to Growth Factors and Tumor Necrosis Factor-α* , 1998, The Journal of Biological Chemistry.

[2]  L. Poole,et al.  Requirement for the two AhpF cystine disulfide centers in catalysis of peroxide reduction by alkyl hydroperoxide reductase. , 1997, Biochemistry.

[3]  Paul S. Hoffman,et al.  Essential Thioredoxin-Dependent Peroxiredoxin System from Helicobacter pylori: Genetic and Kinetic Characterization , 2001, Journal of bacteriology.

[4]  R. Ladenstein,et al.  A protein disulfide oxidoreductase from the archaeon Pyrococcus furiosus contains two thioredoxin fold units , 1998, Nature Structural Biology.

[5]  A. Iwamatsu,et al.  Variants of peroxiredoxins expression in response to hydroperoxide stress. , 2001, Free radical biology & medicine.

[6]  T. Creighton,et al.  Reactivity and ionization of the active site cysteine residues of DsbA, a protein required for disulfide bond formation in vivo. , 1994, Biochemistry.

[7]  L. Poole,et al.  Attachment of the N-terminal domain of Salmonella typhimurium AhpF to Escherichia coli thioredoxin reductase confers AhpC reductase activity but does not affect thioredoxin reductase activity. , 2000, Biochemistry.

[8]  R. Glockshuber,et al.  Characterization of Escherichia coli thioredoxin variants mimicking the active‐sites of other thiol/disulfide oxidoreductases , 1998, Protein science : a publication of the Protein Society.

[9]  M. Toledano,et al.  ATP-dependent reduction of cysteine–sulphinic acid by S. cerevisiae sulphiredoxin , 2003, Nature.

[10]  E. Koonin,et al.  Regeneration of Peroxiredoxins by p53-Regulated Sestrins, Homologs of Bacterial AhpD , 2004, Science.

[11]  Reynolds Cm,et al.  Activity of one of two engineered heterodimers of AhpF, the NADH:peroxiredoxin oxidoreductase from Salmonella typhimurium, reveals intrasubunit electron transfer between domains. , 2001 .

[12]  S. Mayhew,et al.  Cloning, Overexpression, and Characterization of Peroxiredoxin and NADH Peroxiredoxin Reductase from Thermus aquaticus * , 2000, The Journal of Biological Chemistry.

[13]  H. Forman,et al.  Signal Transduction by Reactive Oxygen and Nitrogen Species: Pathways and Chemical Principles , 2003, Springer Netherlands.

[14]  L. Poole,et al.  Flavin-dependent alkyl hydroperoxide reductase from Salmonella typhimurium. 1. Purification and enzymatic activities of overexpressed AhpF and AhpC proteins. , 1996, Biochemistry.

[15]  L. Poole,et al.  Catalytic Mechanism of Thiol Peroxidase from Escherichia coli , 2003, The Journal of Biological Chemistry.

[16]  P. Karplus,et al.  Protein sulfenic acids in redox signaling. , 2004, Annual review of pharmacology and toxicology.

[17]  T. Stadtman Selenium-dependent enzymes. , 1980, Annual review of biochemistry.

[18]  R. Gortner,et al.  SULFUR IN PROTEINS V. THE EFFECT OF ALKALIES UPON CYSTINE, WITH SPECIAL REFERENCE TO THE ACTION OF SODIUM HYDROXIDE , 1933 .

[19]  Joanne I. Yeh,et al.  Structure of the native cysteine-sulfenic acid redox center of enterococcal NADH peroxidase refined at 2.8 A resolution. , 1996, Biochemistry.

[20]  L. Poole Flavin-dependent alkyl hydroperoxide reductase from Salmonella typhimurium. 2. Cystine disulfides involved in catalysis of peroxide reduction. , 1996, Biochemistry.

[21]  L. Poole,et al.  Identification of cysteine sulfenic acid in AhpC of alkyl hydroperoxide reductase. , 2002, Methods in enzymology.

[22]  H. Masaki,et al.  Purification and analysis of a flavoprotein functional as NADH oxidase from Amphibacillus xylanus overexpressed in Escherichia coli. , 1994, The Journal of biological chemistry.

[23]  M. Cha,et al.  Interaction of human thiol-specific antioxidant protein 1 with erythrocyte plasma membrane. , 2000, Biochemistry.

[24]  C D Lima,et al.  Metabolic Enzymes of Mycobacteria Linked to Antioxidant Defense by a Thioredoxin-Like Protein , 2002, Science.

[25]  Raphael Nudelman,et al.  OxyR A Molecular Code for Redox-Related Signaling , 2002, Cell.

[26]  Alexander Wlodawer,et al.  Control of tetrapyrrole biosynthesis by alternate quaternary forms of porphobilinogen synthase , 2003, Nature Structural Biology.

[27]  E. Stadtman,et al.  The isolation and purification of a specific "protector" protein which inhibits enzyme inactivation by a thiol/Fe(III)/O2 mixed-function oxidation system. , 1988, The Journal of biological chemistry.

[28]  R. Aebersold,et al.  Proteomics Analysis of Cellular Response to Oxidative Stress , 2002, The Journal of Biological Chemistry.

[29]  R. Aebersold,et al.  The mitochondrial antioxidant defence system and its response to oxidative stress , 2001, Proteomics.

[30]  W. Jeong,et al.  Distinct Physiological Functions of Thiol Peroxidase Isoenzymes in Saccharomyces cerevisiae* , 2000, The Journal of Biological Chemistry.

[31]  S. Rhee,et al.  Isoforms of mammalian peroxiredoxin that reduce peroxides in presence of thioredoxin. , 1999, Methods in enzymology.

[32]  L. Flohé,et al.  A Unique Cascade of Oxidoreductases Catalyses Trypanothione-Mediated Peroxide Metabolism in Crithidia fasciculata , 1997, Biological chemistry.

[33]  F. Young Biochemistry , 1955, The Indian Medical Gazette.

[34]  Victor Guallar,et al.  Archives of Biochemistry and Biophysics , 1951, Nature.

[35]  P. Wang,et al.  A stable mixed disulfide between thioredoxin reductase and its substrate, thioredoxin: preparation and characterization. , 1996, Biochemistry.

[36]  P. Karplus,et al.  Peroxiredoxin Evolution and the Regulation of Hydrogen Peroxide Signaling , 2003, Science.

[37]  Patrick Griffin,et al.  Peroxynitrite reductase activity of bacterial peroxiredoxins , 2000, Nature.

[38]  J. Beckwith,et al.  Conversion of a Peroxiredoxin into a Disulfide Reductase by a Triplet Repeat Expansion , 2001, Science.

[39]  Edwin D. Mares,et al.  On S , 1994, Stud Logica.

[40]  J. Denu,et al.  Specific and reversible inactivation of protein tyrosine phosphatases by hydrogen peroxide: evidence for a sulfenic acid intermediate and implications for redox regulation. , 1998, Biochemistry.

[41]  J. König,et al.  Reaction Mechanism of Plant 2-Cys Peroxiredoxin , 2003, Journal of Biological Chemistry.

[42]  B. Ames,et al.  Positive control of a regulon for defenses against oxidative stress and some heat-shock proteins in Salmonella typhimurium , 1985, Cell.

[43]  T. Hakoshima,et al.  Crystal structure of a multifunctional 2-Cys peroxiredoxin heme-binding protein 23 kDa/proliferation-associated gene product. , 1999, Proceedings of the National Academy of Sciences of the United States of America.

[44]  A. van Dorsselaer,et al.  A method for detection of overoxidation of cysteines: peroxiredoxins are oxidized in vivo at the active-site cysteine during oxidative stress. , 2002, The Biochemical journal.

[45]  Eui Tae Kim,et al.  Regulation of thioredoxin peroxidase activity by C-terminal truncation. , 2002, Archives of biochemistry and biophysics.

[46]  L. Poole,et al.  Novel application of 7-chloro-4-nitrobenzo-2-oxa-1,3-diazole to identify cysteine sulfenic acid in the AhpC component of alkyl hydroperoxide reductase. , 1997, Biochemistry.

[47]  P. Sadler,et al.  SURPRISING REACTIONS OF IODO PT(IV) AND PT(II) COMPLEXES WITH HUMAN ALBUMIN : DETECTION OF CYS34 SULFENIC ACID , 1999 .

[48]  M. Calzi,et al.  Streptococcus mutans H2O2-forming NADH oxidase is an alkyl hydroperoxide reductase protein. , 2000, Free radical biology & medicine.

[49]  G. Georgiou,et al.  An Overoxidation Journey with a Return Ticket , 2003, Science.

[50]  G. Church,et al.  Cloning and sequencing of thiol-specific antioxidant from mammalian brain: alkyl hydroperoxide reductase and thiol-specific antioxidant define a large family of antioxidant enzymes. , 1994, Proceedings of the National Academy of Sciences of the United States of America.

[51]  Patricia C Babbitt,et al.  Divergence of function in the thioredoxin fold suprafamily: evidence for evolution of peroxiredoxins from a thioredoxin-like ancestor. , 2004, Biochemistry.

[52]  S. Rhee,et al.  Identification of proteins containing cysteine residues that are sensitive to oxidation by hydrogen peroxide at neutral pH. , 2000, Analytical biochemistry.

[53]  A. Vagin,et al.  Crystal structure of decameric 2-Cys peroxiredoxin from human erythrocytes at 1.7 A resolution. , 2000, Structure.

[54]  Z. A. Wood,et al.  Structure, mechanism and regulation of peroxiredoxins. , 2003, Trends in biochemical sciences.

[55]  L. Poole,et al.  Roles for the two cysteine residues of AhpC in catalysis of peroxide reduction by alkyl hydroperoxide reductase from Salmonella typhimurium. , 1997, Biochemistry.

[56]  L. Poole,et al.  Amphibacillus xylanus NADH Oxidase and Salmonella typhimurium Alkyl-hydroperoxide Reductase Flavoprotein Components Show Extremely High Scavenging Activity for Both Alkyl Hydroperoxide and Hydrogen Peroxide in the Presence of S. typhimurium Alkyl-hydroperoxide Reductase 22-kDa Protein Component (*) , 1995, Journal of Biological Chemistry.

[57]  G. G. Stokes "J." , 1890, The New Yale Book of Quotations.

[58]  V. Massey,et al.  Reaction Mechanism of Amphibacillus xylanus NADH Oxidase/Alkyl Hydroperoxide Reductase Flavoprotein* , 1996, The Journal of Biological Chemistry.

[59]  P. Karplus,et al.  AhpF and other NADH:peroxiredoxin oxidoreductases, homologues of low Mr thioredoxin reductase. , 2000, European journal of biochemistry.

[60]  A. Fairlamb,et al.  The structure of reduced tryparedoxin peroxidase reveals a decamer and insight into reactivity of 2Cys-peroxiredoxins. , 2000, Journal of molecular biology.

[61]  J. Helmann,et al.  The OhrR repressor senses organic hydroperoxides by reversible formation of a cysteine-sulfenic acid derivative , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[62]  M. Ludwig,et al.  Twists in catalysis: alternating conformations of Escherichia coli thioredoxin reductase. , 2000, Science.

[63]  Lei Chen,et al.  Alkyl hydroperoxide reductase subunit C (AhpC) protects bacterial and human cells against reactive nitrogen intermediates. , 1998, Molecular cell.

[64]  P. Karplus,et al.  Dimers to doughnuts: redox-sensitive oligomerization of 2-cysteine peroxiredoxins. , 2002, Biochemistry.

[65]  Jacques Meyer,et al.  An NADH-dependent bacterial thioredoxin reductase-like protein in conjunction with a glutaredoxin homologue form a unique peroxiredoxin (AhpC) reducing system in Clostridium pasteurianum. , 2002, Biochemistry.

[66]  Sue Goo Rhee,et al.  Inactivation of Human Peroxiredoxin I during Catalysis as the Result of the Oxidation of the Catalytic Site Cysteine to Cysteine-sulfinic Acid* , 2002, The Journal of Biological Chemistry.

[67]  L. Poole,et al.  The non-flavin redox center of the streptococcal NADH peroxidase. II. Evidence for a stabilized cysteine-sulfenic acid. , 1989, The Journal of biological chemistry.

[68]  B. Knoops,et al.  Crystal structure of human peroxiredoxin 5, a novel type of mammalian peroxiredoxin at 1.5 A resolution. , 2001, Journal of molecular biology.

[69]  J. King,et al.  The Reactivity and Oxidation Pathway of Cysteine 232 in Recombinant Human α1-Antitrypsin* , 2002, The Journal of Biological Chemistry.

[70]  Z A Wood,et al.  Structure of intact AhpF reveals a mirrored thioredoxin-like active site and implies large domain rotations during catalysis. , 2001, Biochemistry.

[71]  A. Godzik,et al.  AhpF can be dissected into two functional units: tandem repeats of two thioredoxin-like folds in the N-terminus mediate electron transfer from the thioredoxin reductase-like C-terminus to AhpC. , 2000, Biochemistry.

[72]  G. Storz,et al.  Identification and molecular analysis of oxyR-regulated promoters important for the bacterial adaptation to oxidative stress. , 1989, Journal of molecular biology.