Cellular stress conditions are reflected in the protein and RNA content of endothelial cell-derived exosomes

Background: The healthy vascular endothelium, which forms the barrier between blood and the surrounding tissues, is known to efficiently respond to stress signals like hypoxia and inflammation by adaptation of cellular physiology and the secretion of (soluble) growth factors and cytokines. Exosomes are potent mediators of intercellular communication. Their content consists of RNA and proteins from the cell of origin, and thus depends on the condition of these cells at the time of exosome biogenesis. It has been suggested that exosomes protect their target cells from cellular stress through the transfer of RNA and proteins. We hypothesized that endothelium-derived exosomes are involved in the endothelial response to cellular stress, and that exosome RNA and protein content reflect the effects of cellular stress induced by hypoxia, inflammation or hyperglycemia. Methods: We exposed cultured endothelial cells to different types of cellular stress (hypoxia, TNF-α-induced activation, high glucose and mannose concentrations) and compared mRNA and protein content of exosomes produced by these cells by microarray analysis and a quantitative proteomics approach. Results: We identified 1,354 proteins and 1,992 mRNAs in endothelial cell-derived exosomes. Several proteins and mRNAs showed altered abundances after exposure of their producing cells to cellular stress, which were confirmed by immunoblot or qPCR analysis. Conclusion: Our data show that hypoxia and endothelial activation are reflected in RNA and protein exosome composition, and that exposure to high sugar concentrations alters exosome protein composition only to a minor extend, and does not affect exosome RNA composition. To access the supplementary material to this article: Tables SI-SIV and Figures S1-2, please see Supplementary files under Article Tools online.

[1]  B. W. van Balkom,et al.  Exosomes and the kidney: prospects for diagnosis and therapy of renal diseases , 2011, Kidney International.

[2]  Hamid Cheshmi Glioblastoma microvesicles transport RNA and proteins that promote tumour growth and provide diagnostic biomarkers , 2011 .

[3]  Daohai Zhang,et al.  The metastasis suppressor, N-myc downstream regulated gene 1 (NDRG1), upregulates p21 via p53-independent mechanisms. , 2011, Carcinogenesis.

[4]  J. Lötvall,et al.  Exosomes Communicate Protective Messages during Oxidative Stress; Possible Role of Exosomal Shuttle RNA , 2010, PloS one.

[5]  Willem Stoorvogel,et al.  MHC class II‐associated proteins in B‐cell exosomes and potential functional implications for exosome biogenesis , 2010, Immunology and cell biology.

[6]  Tohru Mochizuki,et al.  Let-7 MicroRNA Family Is Selectively Secreted into the Extracellular Environment via Exosomes in a Metastatic Gastric Cancer Cell Line , 2010, PloS one.

[7]  A. Harris,et al.  New mechanism for Notch signaling to endothelium at a distance by Delta-like 4 incorporation into exosomes. , 2010, Blood.

[8]  T. D. de Gruijl,et al.  Functional delivery of viral miRNAs via exosomes , 2010, Proceedings of the National Academy of Sciences.

[9]  N. Uldbjerg,et al.  Proteomics reveals lowering oxygen alters cytoskeletal and endoplasmatic stress proteins in human endothelial cells , 2009, Proteomics.

[10]  Xue Leng,et al.  Heat shock protein 70 is secreted from endothelial cells by a non-classical pathway involving exosomes. , 2009, Biochemical and biophysical research communications.

[11]  Robert L Moritz,et al.  Exosomes: proteomic insights and diagnostic potential , 2009, Expert review of proteomics.

[12]  Prakash Kulkarni,et al.  Down‐regulating cold shock protein genes impairs cancer cell survival and enhances chemosensitivity , 2009, Journal of cellular biochemistry.

[13]  M. Goligorsky,et al.  Review article: Endothelial progenitor cells in renal disease , 2009, Nephrology.

[14]  Michael S. Spilman,et al.  Structural heterogeneity and protein composition of exosome‐like vesicles (prostasomes) in human semen , 2009, The Prostate.

[15]  R. Simpson,et al.  Proteomic profiling of exosomes: Current perspectives , 2008, Proteomics.

[16]  Douglas D. Taylor,et al.  Exosomal microRNA: a diagnostic marker for lung cancer. , 2008, Clinical lung cancer.

[17]  Martin Vingron,et al.  Ontologizer 2.0 - a multifunctional tool for GO term enrichment analysis and data exploration , 2008, Bioinform..

[18]  M. Mason,et al.  Human Tumor-Derived Exosomes Down-Modulate NKG2D Expression1 , 2008, The Journal of Immunology.

[19]  V. Kruys,et al.  The cold-inducible RNA-binding protein migrates from the nucleus to cytoplasmic stress granules by a methylation-dependent mechanism and acts as a translational repressor. , 2007, Experimental cell research.

[20]  M. Tytell,et al.  Regulation of heat shock protein 70 release in astrocytes: Role of signaling kinases , 2007, Developmental neurobiology.

[21]  Martin Vingron,et al.  Improved detection of overrepresentation of Gene-Ontology annotations with parent-child analysis , 2007, Bioinform..

[22]  J. Slot,et al.  Cryosectioning and immunolabeling , 2007, Nature Protocols.

[23]  D. Basile The endothelial cell in ischemic acute kidney injury: implications for acute and chronic function. , 2007, Kidney international.

[24]  H. Valadi,et al.  Cell to Cell Signalling via Exosomes Through esRNA , 2007, Cell adhesion & migration.

[25]  A. Knowlton,et al.  HSP60 trafficking in adult cardiac myocytes: role of the exosomal pathway. , 2007, American journal of physiology. Heart and circulatory physiology.

[26]  J. Lötvall,et al.  Exosome-mediated transfer of mRNAs and microRNAs is a novel mechanism of genetic exchange between cells , 2007, Nature Cell Biology.

[27]  K. Pritchard,et al.  Comparative proteomic analysis of PAI‐1 and TNF‐alpha‐derived endothelial microparticles , 2008, Proteomics.

[28]  Kai A. Reidegeld,et al.  Protein labeling by iTRAQ: A new tool for quantitative mass spectrometry in proteome research , 2007, Proteomics.

[29]  J. Malm,et al.  Truncated semenogelin I binds zinc and is cleaved by prostate-specific antigen. , 2006, Journal of andrology.

[30]  J. Dear,et al.  Collection, storage, preservation, and normalization of human urinary exosomes for biomarker discovery. , 2006, Kidney international.

[31]  Aled Clayton,et al.  Isolation and Characterization of Exosomes from Cell Culture Supernatants and Biological Fluids , 2006, Current protocols in cell biology.

[32]  Roeland M. H. Merks,et al.  Endothelial microparticles affect angiogenesis in vitro: role of oxidative stress. , 2005, American journal of physiology. Heart and circulatory physiology.

[33]  M. Mason,et al.  Induction of heat shock proteins in B-cell exosomes , 2005, Journal of Cell Science.

[34]  J. Szemraj,et al.  Mast Cell—Derived Exosomes Activate Endothelial Cells to Secrete Plasminogen Activator Inhibitor Type 1 , 2005, Arteriosclerosis, thrombosis, and vascular biology.

[35]  C. Gross,et al.  Heat shock protein 70 surface-positive tumor exosomes stimulate migratory and cytolytic activity of natural killer cells. , 2005, Cancer research.

[36]  K. Parker,et al.  Multiplexed Protein Quantitation in Saccharomyces cerevisiae Using Amine-reactive Isobaric Tagging Reagents*S , 2004, Molecular & Cellular Proteomics.

[37]  David C. Hess,et al.  Targets for Vascular Protection After Acute Ischemic Stroke , 2004, Stroke.

[38]  G. Raposo,et al.  Exosomes: endosomal-derived vesicles shipping extracellular messages. , 2004, Current opinion in cell biology.

[39]  M. Goligorsky,et al.  Endothelium-derived microparticles impair endothelial function in vitro. , 2004, American journal of physiology. Heart and circulatory physiology.

[40]  Gordon K Smyth,et al.  Linear Models and Empirical Bayes Methods for Assessing Differential Expression in Microarray Experiments , 2004, Statistical applications in genetics and molecular biology.

[41]  B. Seed,et al.  A PCR primer bank for quantitative gene expression analysis. , 2003, Nucleic acids research.

[42]  R. Aebersold,et al.  A statistical model for identifying proteins by tandem mass spectrometry. , 2003, Analytical chemistry.

[43]  R. Beyaert,et al.  Structure–function analysis of the A20‐binding inhibitor of NF‐κB activation, ABIN‐1 , 2003 .

[44]  Joanne E Curran,et al.  Polymorphic variants of NFKB1 and its inhibitory protein NFKBIA, and their involvement in sporadic breast cancer. , 2002, Cancer letters.

[45]  Alexey I Nesvizhskii,et al.  Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search. , 2002, Analytical chemistry.

[46]  Laurence Zitvogel,et al.  Exosomes: composition, biogenesis and function , 2002, Nature Reviews Immunology.

[47]  Martin Vingron,et al.  Variance stabilization applied to microarray data calibration and to the quantification of differential expression , 2002, ISMB.

[48]  Graça Raposo,et al.  The Biogenesis and Functions of Exosomes , 2002, Traffic.

[49]  A. Harris,et al.  HIF-1-dependent regulation of hypoxic induction of the cell death factors BNIP3 and NIX in human tumors. , 2001, Cancer research.

[50]  G. Raposo,et al.  Intestinal epithelial cells secrete exosome-like vesicles. , 2001, Gastroenterology.

[51]  F. Luscinskas,et al.  MCP-1 and IL-8 trigger firm adhesion of monocytes to vascular endothelium under flow conditions , 1999, Nature.

[52]  H. Geuze,et al.  Selective Enrichment of Tetraspan Proteins on the Internal Vesicles of Multivesicular Endosomes and on Exosomes Secreted by Human B-lymphocytes* , 1998, The Journal of Biological Chemistry.

[53]  C. Ferran,et al.  A20 Blocks Endothelial Cell Activation through a NF-κB-dependent Mechanism* , 1996, The Journal of Biological Chemistry.

[54]  C. Melief,et al.  B lymphocytes secrete antigen-presenting vesicles , 1996, The Journal of experimental medicine.

[55]  R. Swerlick,et al.  HMEC-1: establishment of an immortalized human microvascular endothelial cell line. , 1992, The Journal of investigative dermatology.

[56]  C. Benjamin,et al.  Human monocytes bind to two cytokine-induced adhesive ligands on cultured human endothelial cells: endothelial-leukocyte adhesion molecule-1 and vascular cell adhesion molecule-1 , 1991 .

[57]  M S Boguski,et al.  The A20 cDNA induced by tumor necrosis factor alpha encodes a novel type of zinc finger protein. , 1990, The Journal of biological chemistry.

[58]  Hon-chi Lee,et al.  Proteomic Analysis of Vascular Endothelial Cells-Effects of Laminar Shear Stress and High Glucose. , 2009, Journal of proteomics & bioinformatics.

[59]  M. Fisher Injuries to the vascular endothelium: vascular wall and endothelial dysfunction. , 2008, Reviews in neurological diseases.

[60]  D. Yoon,et al.  Interleukin-32: a cytokine and inducer of TNFalpha. , 2005, Immunity.

[61]  R. Beyaert,et al.  Structure-function analysis of the A20-binding inhibitor of NF-kappa B activation, ABIN-1. , 2003, FEBS letters.

[62]  L. Juliano,et al.  Amidolytic activity of prostatic acid phosphatase on human semenogelins and semenogelin-derived synthetic substrates. , 2002, European journal of biochemistry.

[63]  B. Rollins,et al.  Monocyte chemoattractant protein-1. , 1999, Chemical immunology.

[64]  Melinda Fitzgerald,et al.  Immunol. Cell Biol. , 1995 .

[65]  W. Sluiter,et al.  Leukocyte adhesion molecules on the vascular endothelium: their role in the pathogenesis of cardiovascular disease and the mechanisms underlying their expression. , 1993, Journal of cardiovascular pharmacology.

[66]  C. Benjamin,et al.  Human monocytes bind to two cytokine-induced adhesive ligands on cultured human endothelial cells: endothelial-leukocyte adhesion molecule-1 and vascular cell adhesion molecule-1. , 1991, Blood.