Balancing selection on an MYB transcription factor maintains the twig trichome color variation in Melastoma normale

[1]  D. Sarada,et al.  MYB transcription factors—master regulators of phenylpropanoid biosynthesis and diverse developmental and stress responses , 2022, Plant Cell Reports.

[2]  C. Peichel,et al.  Genetics of adaptation , 2022, Proceedings of the National Academy of Sciences of the United States of America.

[3]  P. Casati,et al.  Recent advances on the roles of flavonoids as plant protective molecules after UV and high light exposure. , 2021, Physiologia plantarum.

[4]  C. Lee,et al.  Evolutionary origins of genomic adaptations in an invasive copepod , 2020, Nature Ecology & Evolution.

[5]  S. Agathos,et al.  A genome-wide scan for genes under balancing selection in the plant pathogen Ralstonia solanacearum , 2019, BMC Evolutionary Biology.

[6]  R. Zhou,et al.  Molecular identification of natural hybridization between Melastoma malabathricum and Melastoama beccarianum in Sarawak, Malaysia , 2019, Ecology and evolution.

[7]  Benjamin F. Voight,et al.  BetaScan2: Standardized Statistics to Detect Balancing Selection Utilizing Substitution Data , 2018, bioRxiv.

[8]  J. Kelly,et al.  Extreme copy number variation at a tRNA ligase gene affecting phenology and fitness in yellow monkeyflowers , 2018, Molecular ecology.

[9]  D. Weigel,et al.  Long-term balancing selection drives evolution of immunity genes in Capsella , 2018, bioRxiv.

[10]  C. Peng,et al.  Anthocyanin accumulation in juvenile Schima superba leaves is a growth trade-off by consuming energy for adaptation to high light during summer , 2018, Journal of Plant Ecology.

[11]  Terry Burke,et al.  Genetics and evidence for balancing selection of a sex-linked colour polymorphism in a songbird , 2019, Nature Communications.

[12]  Gabriel Renaud,et al.  glactools: a command-line toolset for the management of genotype likelihoods and allele counts , 2017, bioRxiv.

[13]  Ya-Long Guo,et al.  Long-term balancing selection contributes to adaptation in Arabidopsis and its relatives , 2017, Genome Biology.

[14]  Dorothea Lindtke,et al.  le Long-term balancing selection on chromosomal variants associated with crypsis in a stick insect , 2018 .

[15]  A. Fongod,et al.  Phylogeny and systematics of African Melastomateae (Melastomataceae) , 2017 .

[16]  Katherine M. Siewert,et al.  Detecting Long-Term Balancing Selection Using Allele Frequency Correlation , 2017, bioRxiv.

[17]  Y. Liu,et al.  Similar Morphologies but Different Origins: Hybrid Status of Two More Semi-creeping Taxa of Melastoma , 2017, Front. Plant Sci..

[18]  J. C. Teixeira,et al.  Signatures of Long-Term Balancing Selection in Human Genomes , 2017, bioRxiv.

[19]  W. Stephan,et al.  A genome-wide scan for genes under balancing selection in Drosophila melanogaster , 2017, BMC Evolutionary Biology.

[20]  L. Fishman,et al.  The genetics of extreme microgeographic adaptation: an integrated approach identifies a major gene underlying leaf trichome divergence in Yellowstone Mimulus guttatus , 2016, Molecular ecology.

[21]  Yao-wu Yuan,et al.  An R2R3-MYB transcription factor regulates carotenoid pigmentation in Mimulus lewisii flowers. , 2016, The New phytologist.

[22]  S. Kerje,et al.  Structural genomic changes underlie alternative reproductive strategies in the ruff (Philomachus pugnax) , 2015, Nature Genetics.

[23]  A. Fijarczyk,et al.  Detecting balancing selection in genomes: limits and prospects , 2015, Molecular ecology.

[24]  P. Tiffin,et al.  Advances and limits of using population genetics to understand local adaptation. , 2014, Trends in ecology & evolution.

[25]  J. C. Teixeira,et al.  Advantageous diversity maintained by balancing selection in humans. , 2014, Current opinion in genetics & development.

[26]  J. C. Teixeira,et al.  Long-term balancing selection in LAD1 maintains a missense trans-species polymorphism in humans, chimpanzees and bonobos , 2014, bioRxiv.

[27]  C. Schlötterer,et al.  Sequencing pools of individuals — mining genome-wide polymorphism data without big funding , 2014, Nature Reviews Genetics.

[28]  R. Nielsen,et al.  A Model-Based Approach for Identifying Signatures of Ancient Balancing Selection in Genetic Data , 2014, PLoS genetics.

[29]  Liping Gao,et al.  The long-term maintenance of a resistance polymorphism through diffuse interactions , 2014, Nature.

[30]  M. Hauser Molecular basis of natural variation and environmental control of trichome patterning , 2014, Front. Plant Sci..

[31]  R. Zhou,et al.  Extensive Hybridization and Introgression between Melastoma candidum and M. sanguineum , 2014, PloS one.

[32]  Björn Usadel,et al.  Trimmomatic: a flexible trimmer for Illumina sequence data , 2014, Bioinform..

[33]  G. Sella,et al.  Footprints of ancient-balanced polymorphisms in genetic variation data from closely related species , 2014, Evolution; international journal of organic evolution.

[34]  S. Schaeffer,et al.  Molecular Population Genetics of Inversion Breakpoint Regions in Drosophila pseudoobscura , 2013, G3: Genes, Genomes, Genetics.

[35]  Matthew A. Streisfeld,et al.  Flower color as a model system for studies of plant evo-devo , 2013, Front. Plant Sci..

[36]  Peter Donnelly,et al.  Multiple Instances of Ancient Balancing Selection Shared Between Humans and Chimpanzees , 2013, Science.

[37]  K. Olsen,et al.  Recurrent gene deletions and the evolution of adaptive cyanogenesis polymorphisms in white clover (Trifolium repens L.) , 2013, Molecular ecology.

[38]  Shilin Chen,et al.  FastUniq: A Fast De Novo Duplicates Removal Tool for Paired Short Reads , 2012, PloS one.

[39]  P. Hedrick What is the evidence for heterozygote advantage selection? , 2012, Trends in ecology & evolution.

[40]  D. Kwiatkowski,et al.  Population Genomic Scan for Candidate Signatures of Balancing Selection to Guide Antigen Characterization in Malaria Parasites , 2012, PLoS genetics.

[41]  Joaquín Dopazo,et al.  Qualimap: evaluating next-generation sequencing alignment data , 2012, Bioinform..

[42]  Wolfgang Stephan,et al.  Balancing Selection at the Tomato RCR3 Guardee Gene Family Maintains Variation in Strength of Pathogen Defense , 2012, PLoS genetics.

[43]  M. Feldgarden,et al.  Candidate targets of balancing selection in the genome of Staphylococcus aureus. , 2012, Molecular biology and evolution.

[44]  Mukesh Jain,et al.  NGS QC Toolkit: A Toolkit for Quality Control of Next Generation Sequencing Data , 2012, PloS one.

[45]  Robert Kofler,et al.  PoPoolation2: identifying differentiation between populations using sequencing of pooled DNA samples (Pool-Seq) , 2011, Bioinform..

[46]  M. Rausher,et al.  Gene loss and parallel evolution contribute to species difference in flower color. , 2011, Molecular biology and evolution.

[47]  Jian Lu,et al.  Population genetics in nonmodel organisms: II. natural selection in marginal habitats revealed by deep sequencing on dual platforms. , 2011, Molecular biology and evolution.

[48]  M. Whitlock,et al.  THE GENETIC ARCHITECTURE OF ADAPTATION UNDER MIGRATION–SELECTION BALANCE , 2011, Evolution; international journal of organic evolution.

[49]  J. Kelly,et al.  Differential regulation of a MYB transcription factor is correlated with transgenerational epigenetic inheritance of trichome density in Mimulus guttatus. , 2011, The New phytologist.

[50]  Gonçalo R. Abecasis,et al.  The variant call format and VCFtools , 2011, Bioinform..

[51]  B. Grant,et al.  How and Why Species Multiply: The Radiation of Darwin's Finches , 2011 .

[52]  J. Willis,et al.  Gene Duplication in Mimulus Underlies Parallel Floral Evolution via Independent trans-Regulatory Changes , 2011, Current Biology.

[53]  A. Andrés Balancing Selection in the Human Genome , 2011 .

[54]  A. Futschik,et al.  PoPoolation: A Toolbox for Population Genetic Analysis of Next Generation Sequencing Data from Pooled Individuals , 2011, PloS one.

[55]  Boris Igić,et al.  Species Selection Maintains Self-Incompatibility , 2010, Science.

[56]  X. Xia,et al.  Photoprotective roles of anthocyanins in Begonia semperflorens , 2010 .

[57]  Lewis G. Spurgin,et al.  How pathogens drive genetic diversity: MHC, mechanisms and misunderstandings , 2010, Proceedings of the Royal Society B: Biological Sciences.

[58]  Nicholas Stiffler,et al.  Population Genomics of Parallel Adaptation in Threespine Stickleback using Sequenced RAD Tags , 2010, PLoS genetics.

[59]  Jeremiah D. Degenhardt,et al.  Targets of balancing selection in the human genome. , 2009, Molecular biology and evolution.

[60]  Gonçalo R. Abecasis,et al.  The Sequence Alignment/Map format and SAMtools , 2009, Bioinform..

[61]  Pablo Librado,et al.  DnaSP v5: a software for comprehensive analysis of DNA polymorphism data , 2009, Bioinform..

[62]  D. Lewis,et al.  Light-induced vegetative anthocyanin pigmentation in Petunia , 2009, Journal of experimental botany.

[63]  C. Bustamante,et al.  Molecular and Evolutionary History of Melanism in North American Gray Wolves , 2009, Science.

[64]  J. Kelly,et al.  Effects of Spatially Varying Selection on Nucleotide Diversity and Linkage Disequilibrium: Insights From Deer Mouse Globin Genes , 2008, Genetics.

[65]  M. Schierup,et al.  Repeated Adaptive Introgression at a Gene under Multiallelic Balancing Selection , 2008, PLoS genetics.

[66]  Montgomery Slatkin,et al.  Linkage disequilibrium — understanding the evolutionary past and mapping the medical future , 2008, Nature Reviews Genetics.

[67]  John M Leavitt,et al.  Regulation of the anthocyanin biosynthetic pathway by the TTG1/bHLH/Myb transcriptional complex in Arabidopsis seedlings. , 2008, The Plant journal : for cell and molecular biology.

[68]  P. Insel,et al.  A Single Amino Acid Mutation Contributes to Adaptive Beach Mouse Color Pattern , 2006, Science.

[69]  M. Kreitman,et al.  A Genome-Wide Survey of R Gene Polymorphisms in Arabidopsis[W] , 2006, The Plant Cell Online.

[70]  D. Charlesworth Balancing Selection and Its Effects on Sequences in Nearby Genome Regions , 2006, PLoS genetics.

[71]  T. Kawecki,et al.  Conceptual issues in local adaptation , 2004 .

[72]  X. Vekemans,et al.  INVITED REVIEW: Plant self‐incompatibility in natural populations: a critical assessment of recent theoretical and empirical advances , 2004, Molecular ecology.

[73]  J. Uhrig,et al.  Comprehensive identification of Arabidopsis thaliana MYB transcription factors interacting with R/B-like BHLH proteins. , 2004, The Plant journal : for cell and molecular biology.

[74]  D. Schemske,et al.  Allele substitution at a flower colour locus produces a pollinator shift in monkeyflowers , 2003, Nature.

[75]  J. Krzywinski,et al.  Semipermeable species boundaries between Anopheles gambiae and Anopheles arabiensis: Evidence from multilocus DNA sequence variation , 2003, Proceedings of the National Academy of Sciences of the United States of America.

[76]  P. Hedrick,et al.  PERSPECTIVE: DETECTING ADAPTIVE MOLECULAR POLYMORPHISM: LESSONS FROM THE MHC , 2003, Evolution; international journal of organic evolution.

[77]  David Posada,et al.  PHYLOGEOGRAPHIC HISTORY OF THE LAND SNAIL CANDIDULA UNIFASCIATA (HELICELLINAE, STYLOMMATOPHORA): FRAGMENTATION, CORRIDOR MIGRATION, AND SECONDARY CONTACT , 2002, Evolution; international journal of organic evolution.

[78]  K. Katoh,et al.  MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. , 2002, Nucleic acids research.

[79]  E. Grotewold,et al.  MYB transcription factors in Arabidopsis. , 2002, Trends in plant science.

[80]  K. Meyer Revision of the Southeast Asian genus Melastoma (Melastomataceae) , 2001 .

[81]  S. Renner,et al.  MELASTOMEAE COME FULL CIRCLE: BIOGEOGRAPHIC RECONSTRUCTION AND MOLECULAR CLOCK DATING , 2001, Evolution; international journal of organic evolution.

[82]  G. Turner The Ecology of Adaptive Radiation , 2001, Heredity.

[83]  Burt,et al.  Natural selection in the wild. , 2000, Trends in ecology & evolution.

[84]  B. Charlesworth,et al.  The effects of local selection, balanced polymorphism and background selection on equilibrium patterns of genetic diversity in subdivided populations. , 1997, Genetical research.

[85]  B. Charlesworth,et al.  Theoretical genetics of Batesian mimicry II. Evolution of supergenes. , 1975, Journal of theoretical biology.

[86]  C. Pigott Genetics and the Origin of Species , 1959, Nature.

[87]  J. Willis,et al.  Five anthocyanin polymorphisms are associated with an R2R3-MYB cluster in Mimulus guttatus (Phrymaceae). , 2012, American journal of botany.

[88]  A. Alzohairy BioEdit: An important software for molecular biology , 2011 .

[89]  J. Kelly,et al.  Effects of Geographically Varying Selection on Nucleotide Diversity and Linkage Disequilibrium : Insights from Deer Mouse Globin Genes , 2008 .

[90]  Jean-Hugues B. Hatier,et al.  Anthocyanin Function in Vegetative Organs , 2008 .

[91]  R. Mauricio Genetics of adaptation , 2005 .

[92]  Hilde van der Togt,et al.  Publisher's Note , 2003, J. Netw. Comput. Appl..