Transcriptome Analysis of Three Sheep Intestinal Regions reveals Key Pathways and Hub Regulatory Genes of Large Intestinal Lipid Metabolism
暂无分享,去创建一个
Z. Ji | Guizhi Wang | Jianmin Wang | L. Hou | Jin Wang | T. Chao | Zhaohua Liu
[1] Martin G. Frasch,et al. RNAseq profiling of primary microglia and astrocyte cultures in near-term ovine fetus: A glial in vivo-in vitro multi-hit paradigm in large mammalian brain , 2017, Journal of Neuroscience Methods.
[2] A. Palou,et al. Cpt1a gene expression in peripheral blood mononuclear cells as an early biomarker of diet-related metabolic alterations , 2016, Food & nutrition research.
[3] D. Carreño,et al. Fish oil-induced milk fat depression and associated downregulation of mammary lipogenic genes in dairy ewes. , 2016, Journal of dairy science.
[4] Limin Sun,et al. Comparative transcriptome profiling of longissimus muscle tissues from Qianhua Mutton Merino and Small Tail Han sheep , 2016, Scientific Reports.
[5] Fei Li,et al. Effects of early feeding on the host rumen transcriptome and bacterial diversity in lambs , 2016, Scientific Reports.
[6] T. Spencer,et al. Analysis of the Uterine Epithelial and Conceptus Transcriptome and Luminal Fluid Proteome During the Peri-Implantation Period of Pregnancy in Sheep1 , 2016, Biology of reproduction.
[7] Kristina M. Hettne,et al. Integration of targeted metabolomics and transcriptomics identifies deregulation of phosphatidylcholine metabolism in Huntington’s disease peripheral blood samples , 2016, Metabolomics.
[8] Z. Ji,et al. Identification and Classification of New Transcripts in Dorper and Small-Tailed Han Sheep Skeletal Muscle Transcriptomes , 2016, PloS one.
[9] Christophe Klopp,et al. Comprehensive RNA-Seq profiling to evaluate lactating sheep mammary gland transcriptome , 2016, Scientific Data.
[10] Y. Kamisaka,et al. Modulation of gluconeogenesis and lipid production in an engineered oleaginous Saccharomyces cerevisiae transformant , 2016, Applied Microbiology and Biotechnology.
[11] Takao Shimizu,et al. Lysophosphatidylethanolamine acyltransferase 1/membrane‐bound O‐acyltransferase 1 regulates morphology and function of P19C6 cell‐derived neurons , 2016, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.
[12] G. Barton,et al. How many biological replicates are needed in an RNA-seq experiment and which differential expression tool should you use? , 2015, RNA.
[13] B. Dalrymple,et al. Epithelial, metabolic and innate immunity transcriptomic signatures differentiating the rumen from other sheep and mammalian gastrointestinal tract tissues , 2016, PeerJ.
[14] G. Barton,et al. Erratum: How many biological replicates are needed in an RNA-seq experiment and which differential expression tool should you use? , 2016, RNA.
[15] C. Robert-Granié,et al. Characterization and Comparative Analysis of the Milk Transcriptome in Two Dairy Sheep Breeds using RNA Sequencing , 2015, Scientific Reports.
[16] Y. Yue,et al. De novo assembly and characterization of skin transcriptome using RNAseq in sheep (Ovis aries). , 2015, Genetics and molecular research : GMR.
[17] Davide Heller,et al. STRING v10: protein–protein interaction networks, integrated over the tree of life , 2014, Nucleic Acids Res..
[18] G. Mithieux,et al. Intestinal glucose metabolism revisited. , 2014, Diabetes research and clinical practice.
[19] Bronwen L. Aken,et al. The sheep genome illuminates biology of the rumen and lipid metabolism , 2014, Science.
[20] D. Russell,et al. Regulation of Fatty Acid Oxidation in Mouse Cumulus-Oocyte Complexes during Maturation and Modulation by PPAR Agonists , 2014, PloS one.
[21] Jie Zhou,et al. RNA-seq differential expression studies: more sequence or more replication? , 2014, Bioinform..
[22] J. Loor,et al. Central Role of the PPARγ Gene Network in Coordinating Beef Cattle Intramuscular Adipogenesis in Response to Weaning Age and Nutrition , 2014, Gene regulation and systems biology.
[23] P. Portincasa,et al. New insights into the molecular mechanism of intestinal fatty acid absorption , 2013, European journal of clinical investigation.
[24] Z. Ji,et al. Characterization and Comparative Analyses of Muscle Transcriptomes in Dorper and Small-Tailed Han Sheep Using RNA-Seq Technique , 2013, PloS one.
[25] P. Kellman,et al. MultiContrast Delayed Enhancement (MCODE) improves detection of subendocardial myocardial infarction by late gadolinium enhancement cardiovascular magnetic resonance: a clinical validation study , 2012, Journal of Cardiovascular Magnetic Resonance.
[26] Susan R. Wilson,et al. Efficient experimental design and analysis strategies for the detection of differential expression using RNA-Sequencing , 2012, BMC Genomics.
[27] R. Eckel,et al. Tissue‐Specific Responses of Lipoprotein Lipase to Dietary Macronutrient Composition as a Predictor of Weight Gain Over 4 Years , 2012, Obesity.
[28] Steven L Salzberg,et al. Fast gapped-read alignment with Bowtie 2 , 2012, Nature Methods.
[29] Paras Gupta,et al. The peroxisome proliferator-activated receptor: A family of nuclear receptors role in various diseases , 2011, Journal of advanced pharmaceutical technology & research.
[30] Colin N. Dewey,et al. RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome , 2011, BMC Bioinformatics.
[31] Wei Sun,et al. The microbiome and butyrate regulate energy metabolism and autophagy in the mammalian colon. , 2011, Cell metabolism.
[32] L. Armentano,et al. Ruminant Nutrition Symposium: Productivity, digestion, and health responses to hindgut acidosis in ruminants. , 2011, Journal of animal science.
[33] G. Breves,et al. Transepithelial transport and intraepithelial metabolism of short-chain fatty acids (SCFA) in the porcine proximal colon are influenced by SCFA concentration and luminal pH. , 2011, Comparative biochemistry and physiology. Part A, Molecular & integrative physiology.
[34] John Turk,et al. Identification of a Physiologically Relevant Endogenous Ligand for PPARα in Liver , 2009, Cell.
[35] Brad T. Sherman,et al. Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists , 2008, Nucleic acids research.
[36] M. Gerstein,et al. RNA-Seq: a revolutionary tool for transcriptomics , 2009, Nature Reviews Genetics.
[37] R. Murphy,et al. Lysophospholipid Acyltransferases and Arachidonate Recycling in Human Neutrophils* , 2008, Journal of Biological Chemistry.
[38] J. Peters,et al. Quantitative expression patterns of peroxisome proliferator-activated receptor-beta/delta (PPARbeta/delta) protein in mice. , 2008, Biochemical and biophysical research communications.
[39] S. Stymne,et al. A family of eukaryotic lysophospholipid acyltransferases with broad specificity , 2008, FEBS letters.
[40] J. Peters,et al. Quantitative expression patterns of peroxisome proliferator-activated receptor- β / δ (PPAR β / δ ) protein in mice , 2008 .
[41] Brad T. Sherman,et al. Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources , 2008, Nature Protocols.
[42] Béatrice Desvergne,et al. From molecular action to physiological outputs: peroxisome proliferator-activated receptors are nuclear receptors at the crossroads of key cellular functions. , 2006, Progress in lipid research.
[43] P. Shannon,et al. Cytoscape: a software environment for integrated models of biomolecular interaction networks. , 2003, Genome research.
[44] A I Saeed,et al. TM4: a free, open-source system for microarray data management and analysis. , 2003, BioTechniques.
[45] D. Ramji,et al. Lipoprotein lipase: structure, function, regulation, and role in disease , 2002, Journal of Molecular Medicine.
[46] K. Beauchemin,et al. Effects of particle size of alfalfa-based dairy cow diets on site and extent of digestion. , 2002, Journal of dairy science.
[47] C. McMaster,et al. PC and PE synthesis: Mixed micellar analysis of the cholinephosphotransferase and ethanolaminephosphotransferase activities of human choline/ethanolamine phosphotransferase 1 (CEPT1) , 2002, Lipids.
[48] J. Berger,et al. The mechanisms of action of PPARs. , 2002, Annual review of medicine.
[49] B. Hull,et al. Site of nutrient digestion by dairy cows fed corn of different particle sizes or steam-rolled. , 2001, Journal of dairy science.
[50] P. Siroka,et al. In vitro study of the rumen and hindgut fermentation of fibrous materials (meadow hay, beech sawdust, wheat straw) in sheep. , 2000 .
[51] J. Claverie,et al. The significance of digital gene expression profiles. , 1997, Genome research.
[52] J. Auwerx,et al. The Organization, Promoter Analysis, and Expression of the Human PPARγ Gene* , 1997, The Journal of Biological Chemistry.
[53] M. Vernay,et al. Avoparcin and monensin effects on the digestion of nutrients in dairy cows fed a mixed diet , 1995 .
[54] A. Vanhatalo,et al. The role of the large intestine in post-ruminal digestion of feeds as measured by the mobile-bag method in cattle , 1995, British Journal of Nutrition.
[55] Y. Benjamini,et al. Controlling the false discovery rate: a practical and powerful approach to multiple testing , 1995 .
[56] E. N. Bergman. Energy contributions of volatile fatty acids from the gastrointestinal tract in various species. , 1990, Physiological reviews.
[57] N. Mcneil. Nutritional implications of human and mammalian large intestinal function. , 1988, World review of nutrition and dietetics.
[58] James W. Anderson,et al. Short-Chain Fatty Acid Fermentation Products of Plant Fiber Affect Glucose Metabolism of Isolated Rat Hepatocytes , 1984, Proceedings of the Society for Experimental Biology and Medicine. Society for Experimental Biology and Medicine.
[59] G. E. Mitchell,et al. Acetate and propionate production in the cecum and proximal colon of lambs. , 1984, Journal of animal science.
[60] J. Nolan,et al. Studies of the large intestine of sheep , 1982, British Journal of Nutrition.
[61] W. Hoover. Digestion and absorption in the hindgut of ruminants. , 1978, Journal of animal science.
[62] J. Prescott,et al. The effect in sheep of physical form and stage of growth on the sites of digestion of a dried grass , 1972, British Journal of Nutrition.
[63] J. Hecker. Ammonia in the large intestine of herbivores , 1971, British Journal of Nutrition.
[64] G. Faichney. Production of volatile fatty acids in the sheep caecum. , 1969 .
[65] V. Williams. Microbial metabolism in the forestomachs and the large intertine of sheep , 1965 .