Positive Selection Detection in 40,000 HumanImmunodeficiency Virus (HIV) Type 1 Sequences Automatically IdentifiesDrug Resistance and Positive Fitness Mutations in HIV Proteaseand ReverseTranscriptase
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[1] Marianne Manchester,et al. Complete mutagenesis of the HIV-1 protease , 1989, Nature.
[2] J. Coffin,et al. HIV population dynamics in vivo: implications for genetic variation, pathogenesis, and therapy , 1995, Science.
[3] L. M. Mansky,et al. Lower in vivo mutation rate of human immunodeficiency virus type 1 than that predicted from the fidelity of purified reverse transcriptase , 1995, Journal of virology.
[4] A. Hughes,et al. Natural selection on the gag, pol, and env genes of human immunodeficiency virus 1 (HIV-1). , 1995, Molecular biology and evolution.
[5] B. Larder,et al. Mutations in Retroviral Genes Associated with Drug Resistance , 1996 .
[6] A. Perelson,et al. HIV-1 Dynamics in Vivo: Virion Clearance Rate, Infected Cell Life-Span, and Viral Generation Time , 1996, Science.
[7] H. Mitsuya,et al. HIV-1 acquires resistance to two classes of antiviral drugs through homologous recombination. , 1997, Antiviral research.
[8] W. Fitch,et al. Long term trends in the evolution of H(3) HA1 human influenza type A. , 1997, Proceedings of the National Academy of Sciences of the United States of America.
[9] R. Nielsen,et al. Likelihood models for detecting positively selected amino acid sites and applications to the HIV-1 envelope gene. , 1998, Genetics.
[10] P. Green,et al. Base-calling of automated sequencer traces using phred. I. Accuracy assessment. , 1998, Genome research.
[11] T Gojobori,et al. A method for detecting positive selection at single amino acid sites. , 1999, Molecular biology and evolution.
[12] A. Telenti,et al. Polymorphism of HIV type 1 gag p7/p1 and p1/p6 cleavage sites: clinical significance and implications for resistance to protease inhibitors. , 2000, AIDS research and human retroviruses.
[13] P. Sharp,et al. Origins and evolution of AIDS viruses: estimating the time-scale. , 2000, Biochemical Society transactions.
[14] D. Persing,et al. Comparative Evaluation of Three Human Immunodeficiency Virus Genotyping Systems: the HIV-GenotypR Method, the HIV PRT GeneChip Assay, and the HIV-1 RT Line Probe Assay , 2000, Journal of Clinical Microbiology.
[15] N. Goldman,et al. Codon-substitution models for heterogeneous selection pressure at amino acid sites. , 2000, Genetics.
[16] Christopher J. Lee,et al. Genome-wide analysis of single-nucleotide polymorphisms in human expressed sequences , 2000, Nature Genetics.
[17] T. Merigan,et al. Variants Other than Aspartic Acid at Codon 69 of the Human Immunodeficiency Virus Type 1 Reverse Transcriptase Gene Affect Susceptibility to Nucleoside Analogs , 2001, Antimicrobial Agents and Chemotherapy.
[18] Richard A. Rode,et al. Identification of Genotypic Changes in Human Immunodeficiency Virus Protease That Correlate with Reduced Susceptibility to the Protease Inhibitor Lopinavir among Viral Isolates from Protease Inhibitor-Experienced Patients , 2001, Journal of Virology.
[19] J Licinio,et al. Single nucleotide polymorphism identification in candidate gene systems of obesity , 2001, The Pharmacogenomics Journal.
[20] R. Shafer,et al. A Guide to HIV-1 Reverse Transcriptase and Protease Sequencing for Drug Resistance Studies. , 2001, HIV sequence compendium.
[21] B. Korber,et al. HIV sequence compendium 2002 , 2002 .
[22] L. Peltonen,et al. Efficient discovery of single-nucleotide polymorphisms in coding regions of human genes , 2002, The Pharmacogenomics Journal.
[23] Christopher J. Lee,et al. Multiple sequence alignment using partial order graphs , 2002, Bioinform..
[24] C. Moore,et al. Evidence of HIV-1 Adaptation to HLA-Restricted Immune Responses at a Population Level , 2002, Science.
[25] Bradley J. Betts,et al. Human immunodeficiency virus reverse transcriptase and protease sequence database. , 2003, Nucleic acids research.
[26] Thomas D. Wu,et al. Mutation Patterns and Structural Correlates in Human Immunodeficiency Virus Type 1 Protease following Different Protease Inhibitor Treatments , 2003, Journal of Virology.
[27] Wen-Hsiung Li. Unbiased estimation of the rates of synonymous and nonsynonymous substitution , 2006, Journal of Molecular Evolution.