Comparative genomics of citric-acid-producing Aspergillus niger ATCC 1015 versus enzyme-producing CBS 513.88.
暂无分享,去创建一个
Adrian Tsang | Alex Atkins | Harris Shapiro | Asaf Salamov | Andrea Aerts | Peter J Schaap | Kaj Albermann | Jasmyn Pangilinan | Jane Grimwood | Johannes A Roubos | J. A. Roubos | David Culley | A. Salamov | G. Braus | J. Grimwood | J. Frisvad | S. Lucas | J. Nielsen | M. Andersen | M. L. Nielsen | L. Poulsen | K. Albermann | R. Berka | H. Pel | E. Lindquist | H. Menke | N. V. van Peij | S. Baker | I. Grigoriev | A. Aerts | Y. Lou | H. Shapiro | J. Magnuson | Diego Martínez | A. Tsang | P. Schaap | D. Culley | J. Pangilinan | G. Hofmann | J. B. Nielsen | H. Stam | C. Kubicek | Margarita Salazar | P. V. D. van de Vondervoort | J. Thykaer | K. Nielsen | R. Albang | S. Braus-Stromeyer | L. Corrochano | Z. Dai | P. W. V. van Dijck | L. Lasure | M. Meijer | S. Meijer | A. V. van Ooyen | R. Samson | J. M. van den Brink | A. Atkins | J. Nielsen | Susan Lucas | Piet W M van Dijck | Ziyu Dai | Hein Stam | Diego Martinez | Jens Nielsen | Mikael R Andersen | Igor V Grigoriev | Jens C Frisvad | Gerhard H Braus | Kristian F Nielsen | Jette Thykaer | Erika Lindquist | Scott E Baker | Albert J J van Ooyen | Jon K Magnuson | Randy M Berka | Christian P Kubicek | Gerald Hofmann | Peter J I van de Vondervoort | Margarita P Salazar | Richard Albang | Susanna A Braus-Stromeyer | Luis M Corrochano | Linda L Lasure | Hildegard Menke | Martin Meijer | Susan L Meijer | Jakob B Nielsen | Michael L Nielsen | Herman J Pel | Lars Poulsen | Rob A Samson | Johannes M van den Brink | Yigong Lou | Noël N M E van Peij | N. Van Peij | J. Nielsen | Jasmyn Pangilinan | Jens Nielsen | Jette Thykaer | Margarita P. Salazar | Noël N. M. E. van Peij
[1] J. Frisvad,et al. Standardized high-performance liquid chromatography of 182 mycotoxins and other fungal metabolites based on alkylphenone retention indices and UV-VIS spectra (diode array detection). , 1988, Journal of chromatography.
[2] A. H. Stouthamer,et al. The complete karyotype of Aspergilius niger: the use of introduced electrophoretic mobility variation of chromosomes for gene assignment studies , 1994, Molecular and General Genetics MGG.
[3] E. Martens-Uzunova,et al. An evolutionary conserved d-galacturonic acid metabolic pathway operates across filamentous fungi capable of pectin degradation. , 2008, Fungal genetics and biology : FG & B.
[4] Hiroshi Tanaka,et al. Yellow Pigments of Aspergillus niger and Asp. awamori , 1966 .
[5] Christian P. Kubicek,et al. Aspergillus niger citric acid accumulation: do we understand this well working black box? , 2003, Applied Microbiology and Biotechnology.
[6] F J Cabañes,et al. Ochratoxin A production by strains of Aspergillus niger var. niger , 1994, Applied and environmental microbiology.
[7] J. Smedsgaard. Micro-scale extraction procedure for standardized screening of fungal metabolite production in cultures. , 1997, Journal of chromatography. A.
[8] Jens Nielsen,et al. A trispecies Aspergillus microarray: Comparative transcriptomics of three Aspergillus species , 2008, Proceedings of the National Academy of Sciences.
[9] B Marshall,et al. Gene Ontology Consortium: The Gene Ontology (GO) database and informatics resource , 2004, Nucleic Acids Res..
[10] Jibin Sun,et al. Metabolic peculiarities of Aspergillus niger disclosed by comparative metabolic genomics , 2007, Genome Biology.
[11] Susumu Goto,et al. The KEGG resource for deciphering the genome , 2004, Nucleic Acids Res..
[12] K. Steube,et al. New natural products from the sponge-derived fungus Aspergillus niger. , 2004, Journal of natural products.
[13] A. Debets,et al. Arginine and proline genes ofAspergillus niger , 1992, Antonie van Leeuwenhoek.
[14] A. Debets,et al. An electrophoretic karyotype of Aspergillus niger , 1990, Molecular and General Genetics MGG.
[15] J. A. Roubos,et al. Genome sequencing and analysis of the versatile cell factory Aspergillus niger CBS 513.88 , 2007, Nature Biotechnology.
[16] R. C. Shank,et al. Structure and synthesis of kotanin and desmethylkotanin, metabolites of Aspergillus glaucus. , 1971, The Journal of organic chemistry.
[17] S. Tamura,et al. Isolation and Identification of Nigragillin as a Insecticidal Metabolite Produced by a Aspergillus niger , 1975 .
[18] P. W. V. van Dijck,et al. On the safety of a new generation of DSM Aspergillus niger enzyme production strains. , 2003, Regulatory toxicology and pharmacology : RTP.
[19] A. Debets,et al. Mitotic mapping in linkage group V of Aspergillus niger based on selection of auxotrophic recombinants by Novozym enrichment. , 1989, Canadian journal of microbiology.
[20] Peter J. Punt,et al. Aspergillus niger genome-wide analysis reveals a large number of novel alpha-glucan acting enzymes with unexpected expression profiles , 2008, Molecular Genetics and Genomics.
[21] J. Frisvad,et al. Standardized high-performance liquid chromatography of 182 mycotoxins and other fungal metabolites based on alkylphenone retention indices and UV—VIS spectra (diodearray detection) , 1987 .
[22] O. Yamada,et al. Yellow Pigments of Aspergillus niger and Asp. awamori Part I , 1966 .
[23] Jodie J. Yin,et al. A comprehensive evolutionary classification of proteins encoded in complete eukaryotic genomes , 2004, Genome Biology.
[24] S. Ōmura,et al. Funalenone, a novel collagenase inhibitor produced by Aspergillus niger. , 1999, The Journal of antibiotics.
[25] Jens Christian Frisvad,et al. Penicillium subgenus Penicillium - A guide to identification of food and air-borne terverticillate Penicillia and their mycotoxins , 2004 .
[26] J. Nielsen,et al. Metabolic model integration of the bibliome, genome, metabolome and reactome of Aspergillus niger , 2008, Molecular systems biology.
[27] Jaideep P. Sundaram,et al. Genomic Islands in the Pathogenic Filamentous Fungus Aspergillus fumigatus , 2008, PLoS genetics.
[28] Christina A. Cuomo,et al. Sequencing of Aspergillus nidulans and comparative analysis with A. fumigatus and A. oryzae , 2005, Nature.
[29] Paramvir S. Dehal,et al. Whole-Genome Shotgun Assembly and Analysis of the Genome of Fugu rubripes , 2002, Science.
[30] J. Frisvad,et al. On the safety of Aspergillus niger – a review , 2002, Applied Microbiology and Biotechnology.
[31] D. Cullen,et al. The genome of an industrial workhorse , 2007, Nature Biotechnology.
[32] B. Macris,et al. Protein content and amino acid composition of certain fungi evaluated for microbial protein production. , 1975, Applied microbiology.
[33] D. Dolphin. Structure and synthesis , 1978 .
[34] Thomas L. Madden,et al. BLAST: at the core of a powerful and diverse set of sequence analysis tools , 2004, Nucleic Acids Res..
[35] N. L. Glass,et al. Development of primer sets designed for use with the PCR to amplify conserved genes from filamentous ascomycetes , 1995, Applied and environmental microbiology.
[36] Thomas Lengauer,et al. Improved scoring of functional groups from gene expression data by decorrelating GO graph structure , 2006, Bioinform..
[37] M. Ashburner,et al. Gene Ontology: tool for the unification of biology , 2000, Nature Genetics.
[38] J. McDonald,et al. Copia is transcriptionally responsive to environmental stress. , 1985, Nucleic acids research.
[39] A. Debets,et al. Adenine and pyrimidine genes of Aspergillus niger and evidence for a seventh linkage group , 1989, Current Genetics.
[40] Rafael A Irizarry,et al. Exploration, normalization, and summaries of high density oligonucleotide array probe level data. , 2003, Biostatistics.
[41] R. Berka,et al. Cloning, characterization, and expression of two α-amylase genes from Aspergillus niger var. awamori , 1990, Current Genetics.
[42] T. Ishikawa,et al. Cloning of the α-Amylase cDNA of Aspergillus shirousamii and Its Expression in Saccharomyces cerevisiae , 1992 .
[43] K. H. Wolfe,et al. Evidence for horizontal transfer of a secondary metabolite gene cluster between fungi , 2008, Genome Biology.
[44] J. Frisvad,et al. (1016-1018) Proposal for Nomina Specifica Conservanda and Rejicienda in Aspergillus and Penicillium (Fungi) , 1992 .
[45] F. Kempken,et al. Strain-specific retrotransposon-mediated recombination in commercially used Aspergillus niger strain , 2008, Molecular Genetics and Genomics.
[46] H. Driguez,et al. Measurement of amyloglucosidase using P -nitrophenyl -maltoside as substrate , 1991 .
[47] R. J. Cole,et al. Orlandin: a nontoxic fungal metabolite with plant growth inhibiting properties. , 1979, Journal of agricultural and food chemistry.
[48] Susumu Goto,et al. The KEGG databases at GenomeNet , 2002, Nucleic Acids Res..
[49] A. Debets,et al. Genetic analysis of Aspergillus niger: Isolation of chlorate resistance mutants, their use in mitotic mapping and evidence for an eighth linkage group , 1990, Molecular and General Genetics MGG.
[50] J. Frisvad,et al. Secondary metabolite profiling, growth profiles and other tools for species recognition and important Aspergillus mycotoxins , 2007, Studies in mycology.
[51] Barbara L. Billington,et al. Position effect at S. cerevisiae telomeres: Reversible repression of Pol II transcription , 1990, Cell.
[52] Kristian Fog Nielsen,et al. Fungal metabolite screening: database of 474 mycotoxins and fungal metabolites for dereplication by standardised liquid chromatography-UV-mass spectrometry methodology. , 2003, Journal of chromatography. A.
[53] J. Frisvad,et al. Fumonisin B2 production by Aspergillus niger. , 2007, Journal of agricultural and food chemistry.
[54] R. Durbin,et al. Using GeneWise in the Drosophila annotation experiment. , 2000, Genome research.
[55] S. Ōmura,et al. Tensidols, New Potentiators of Antifungal Miconazole Activity, Produced by Aspergillus niger FKI-2342 , 2006, The Journal of Antibiotics.
[56] S Rozen,et al. Primer3 on the WWW for general users and for biologist programmers. , 2000, Methods in molecular biology.
[57] Yves Van de Peer,et al. TREECON for Windows: a software package for the construction and drawing of evolutionary trees for the Microsoft Windows environment , 1994, Comput. Appl. Biosci..
[58] Jay D Keasling,et al. Developing Aspergillus as a host for heterologous expression. , 2009, Biotechnology advances.
[59] T. Ishikawa,et al. Cloning of the alpha-amylase cDNA of Aspergillus shirousamii and its expression in Saccharomyces cerevisiae. , 1992, Bioscience, biotechnology, and biochemistry.
[60] Christina A. Cuomo,et al. The Fusarium graminearum Genome Reveals a Link Between Localized Polymorphism and Pathogen Specialization , 2007, Science.
[61] P. Green,et al. Consed: a graphical tool for sequence finishing. , 1998, Genome research.
[62] V. Solovyev,et al. Ab initio gene finding in Drosophila genomic DNA. , 2000, Genome research.
[63] K. H. Wolfe,et al. Elusive Origins of the Extra Genes in Aspergillus oryzae , 2008, PloS one.
[64] J. A. Roubos,et al. Identification of InuR, a new Zn(II)2Cys6 transcriptional activator involved in the regulation of inulinolytic genes in Aspergillus niger , 2007, Molecular Genetics and Genomics.
[65] S. Baker. Aspergillus niger genomics: past, present and into the future. , 2006, Medical mycology.
[66] Jean YH Yang,et al. Bioconductor: open software development for computational biology and bioinformatics , 2004, Genome Biology.
[67] J. Palmer,et al. Horizontal gene transfer in eukaryotic evolution , 2008, Nature Reviews Genetics.
[68] Rolf Apweiler,et al. InterProScan - an integration platform for the signature-recognition methods in InterPro , 2001, Bioinform..