Prenatal Exposure to Metabolism-Disrupting Chemicals, Cord Blood Transcriptome Perturbations, and Birth Weight in a Belgian Birth Cohort

Prenatal exposure to metabolism-disrupting chemicals (MDCs) has been linked to birth weight, but the molecular mechanisms remain largely unknown. In this study, we investigated gene expressions and biological pathways underlying the associations between MDCs and birth weight, using microarray transcriptomics, in a Belgian birth cohort. Whole cord blood measurements of dichlorodiphenyldichloroethylene (p,p’-DDE), polychlorinated biphenyls 153 (PCB-153), perfluorooctanoic acid (PFOA), perfluorooctane sulfonic acid (PFOS), and transcriptome profiling were conducted in 192 mother–child pairs. A workflow including a transcriptome-wide association study, pathway enrichment analysis with a meet-in-the-middle approach, and mediation analysis was performed to characterize the biological pathways and intermediate gene expressions of the MDC–birth weight relationship. Among 26,170 transcriptomic features, we successfully annotated five overlapping metabolism-related gene expressions associated with both an MDC and birth weight, comprising BCAT2, IVD, SLC25a16, HAS3, and MBOAT2. We found 11 overlapping pathways, and they are mostly related to genetic information processing. We found no evidence of any significant mediating effect. In conclusion, this exploratory study provides insights into transcriptome perturbations that may be involved in MDC-induced altered birth weight.

[1]  P. Schrauwen,et al.  Role of branched-chain amino acid metabolism in the pathogenesis of obesity and type 2 diabetes-related metabolic disturbances BCAA metabolism in type 2 diabetes , 2022, Nutrition & Diabetes.

[2]  V. de Lédinghen,et al.  Association between birth weight, preterm birth, and nonalcoholic fatty liver disease in a community‐based cohort , 2022, Hepatology.

[3]  E. Radke,et al.  ‘Omics in environmental epidemiological studies of chemical exposures: A systematic evidence map , 2022, Environment international.

[4]  L. Lipovich,et al.  Gestational Age Dependence of the Maternal Circulating Long Non-Coding RNA Transcriptome During Normal Pregnancy Highlights Antisense and Pseudogene Transcripts , 2021, Frontiers in Genetics.

[5]  Ji-Young Lee,et al.  Integrated multi-omics analysis reveals the underlying molecular mechanism for developmental neurotoxicity of perfluorooctanesulfonic acid in zebrafish. , 2021, Environment international.

[6]  L. Lauritzen,et al.  Systematic Literature Review and Meta-Analysis of the Relationship Between Polyunsaturated and Trans Fatty Acids During Pregnancy and Offspring Weight Development , 2021, Frontiers in Nutrition.

[7]  M. Schulze,et al.  Prospective Identification of Elevated Circulating CDCP1 in Patients Years before Onset of Lung Cancer , 2021, Cancer Research.

[8]  E. Lebret,et al.  Network Analysis to Identify Communities Among Multiple Exposure Biomarkers Measured at Birth in Three Flemish General Population Samples , 2021, Frontiers in Public Health.

[9]  O. Delaneau,et al.  Gene regulation contributes to explain the impact of early life socioeconomic disadvantage on adult inflammatory levels in two cohort studies , 2021, Scientific reports.

[10]  A. Fucic,et al.  Chapter 5. Sex-specific Actions of Endocrine Disruptors , 2020 .

[11]  K. Wever,et al.  Prenatal Amino Acid Supplementation to Improve Fetal Growth: A Systematic Review and Meta-Analysis , 2020, Nutrients.

[12]  H. Siljander,et al.  Prenatal exposure to perfluoroalkyl substances modulates neonatal serum phospholipids, increasing risk of type 1 diabetes. , 2020, Environment international.

[13]  M. Kogevinas,et al.  A multi-omic analysis of birthweight in newborn cord blood reveals new underlying mechanisms related to cholesterol metabolism , 2020, Metabolism: clinical and experimental.

[14]  M. Vafeiadi,et al.  Association of maternal thyroid function with birthweight: a systematic review and individual-participant data meta-analysis. , 2020, The lancet. Diabetes & endocrinology.

[15]  Ye Zhang,et al.  Acetylation promotes BCAT2 degradation to suppress BCAA catabolism and pancreatic cancer growth , 2020, Signal Transduction and Targeted Therapy.

[16]  Michael W. Dzierlenga,et al.  Birth weight and perfluorooctane sulfonic acid: a random-effects meta-regression analysis , 2020, Environmental epidemiology.

[17]  S. El-Kadi,et al.  Leucine Supplementation Does Not Enhance Translation Initiation of Low Birth‐Weight Neonatal Pigs Despite Greater Sestrin2 Expression in Skeletal Muscle , 2020, The FASEB Journal.

[18]  Youhu Chen,et al.  Branched-Chain Amino Acids Exacerbate Obesity-Related Hepatic Glucose and Lipid Metabolic Disorders via Attenuating Akt2 Signaling , 2020, Diabetes.

[19]  D. Silverman,et al.  Transcriptomic changes in the nasal epithelium associated with diesel engine exhaust exposure. , 2020, Environment international.

[20]  S. Bernasconi,et al.  Endocrine-Disrupting Chemicals in Human Fetal Growth , 2020, International journal of molecular sciences.

[21]  C. Bornehag,et al.  Maternal serum levels of perfluoroalkyl substances in early pregnancy and offspring birth weight , 2019, Pediatric Research.

[22]  M. T. B. Geller,et al.  Molecular , 2019, Modern Pathology.

[23]  Jing Wang,et al.  WebGestalt 2019: gene set analysis toolkit with revamped UIs and APIs , 2019, Nucleic Acids Res..

[24]  M. Plusquin,et al.  A Co-expression Analysis of the Placental Transcriptome in Association With Maternal Pre-pregnancy BMI and Newborn Birth Weight , 2019, Front. Genet..

[25]  Dean P. Jones,et al.  Perfluoroalkyl substances, metabolomic profiling, and alterations in glucose homeostasis among overweight and obese Hispanic children: A proof-of-concept analysis , 2019, Environment international.

[26]  J. Kleinjans,et al.  Identification of Sex-Specific Transcriptome Responses to Polychlorinated Biphenyls (PCBs) , 2019, Scientific Reports.

[27]  Gary D Bader,et al.  Pathway enrichment analysis and visualization of omics data using g:Profiler, GSEA, Cytoscape and EnrichmentMap , 2019, Nature Protocols.

[28]  C. Pérez-Cerdá,et al.  Value of genetic analysis for confirming inborn errors of metabolism detected through the Spanish neonatal screening program , 2019, European Journal of Human Genetics.

[29]  K. Hao,et al.  Genetic regulation of the placental transcriptome underlies birth weight and risk of childhood obesity , 2018, PLoS genetics.

[30]  Changwei Li,et al.  Birth Weight and Risk of Type 2 Diabetes Mellitus, Cardiovascular Disease, and Hypertension in Adults: A Meta‐Analysis of 7 646 267 Participants From 135 Studies , 2018, Journal of the American Heart Association.

[31]  D. Savitz,et al.  Serum Perfluorooctanoic Acid and Birthweight: An Updated Meta-analysis With Bias Analysis , 2018, Epidemiology.

[32]  Marc Chadeau-Hyam,et al.  Comparison of statistical methods and the use of quality control samples for batch effect correction in human transcriptome data , 2018, PloS one.

[33]  E. Ha,et al.  Association of maternal omega-6 fatty acid intake with infant birth outcomes: Korean Mothers and Children’s Environmental Health (MOCEH) , 2018, Nutrition Journal.

[34]  N. Chalasani,et al.  Low and High Birth Weights Are Risk Factors for Nonalcoholic Fatty Liver Disease in Children. , 2017, The Journal of pediatrics.

[35]  A. Baccarelli,et al.  'Omics' and endocrine-disrupting chemicals — new paths forward , 2017, Nature Reviews Endocrinology.

[36]  M. Mendez,et al.  Metabolism disrupting chemicals and metabolic disorders. , 2017, Reproductive toxicology.

[37]  V. Nelen,et al.  Metabolic targets of endocrine disrupting chemicals assessed by cord blood transcriptome profiling. , 2016, Reproductive toxicology.

[38]  N. Saenen,et al.  Newborn sex-specific transcriptome signatures and gestational exposure to fine particles: findings from the ENVIRONAGE birth cohort , 2016, Environmental Health.

[39]  B. Conway,et al.  Perfluoroalkyl substances and beta cell deficient diabetes. , 2016, Journal of diabetes and its complications.

[40]  Tsippi Iny Stein,et al.  The GeneCards Suite: From Gene Data Mining to Disease Genome Sequence Analyses , 2016, Current protocols in bioinformatics.

[41]  A. Vaag,et al.  Metabolic and Transcriptional Changes in Cultured Muscle Stem Cells from Low Birth Weight Subjects. , 2016, The Journal of clinical endocrinology and metabolism.

[42]  K. Randhir,et al.  Maternal Fatty Acids and Their Association with Birth Outcome: A Prospective Study , 2016, PloS one.

[43]  C. Ling,et al.  Adipose tissue transcriptomics and epigenomics in low birthweight men and controls: role of high-fat overfeeding , 2016, Diabetologia.

[44]  C. Tudor-Locke,et al.  Birth weight and childhood obesity: a 12-country study. , 2015, International journal of obesity supplements.

[45]  F. Hirche,et al.  Maternal Diabetes Leads to Adaptation in Embryonic Amino Acid Metabolism during Early Pregnancy , 2015, PloS one.

[46]  G. von Heijne,et al.  Tissue-based map of the human proteome , 2015, Science.

[47]  Kosuke Imai,et al.  mediation: R Package for Causal Mediation Analysis , 2014 .

[48]  V. Nelen,et al.  Expression of the sFLT1 Gene in Cord Blood Cells Is Associated to Maternal Arsenic Exposure and Decreased Birth Weight , 2014, PloS one.

[49]  Siyuan Peng,et al.  An integrated metabonomics and transcriptomics approach to understanding metabolic pathway disturbance induced by perfluorooctanoic acid. , 2013, Journal of pharmaceutical and biomedical analysis.

[50]  C. Baines,et al.  Physiological and pathological roles of mitochondrial SLC25 carriers. , 2013, The Biochemical journal.

[51]  P. Laurberg,et al.  Low Birth Weight in Children Born to Mothers with Hyperthyroidism and High Birth Weight in Hypothyroidism, whereas Preterm Birth Is Common in Both Conditions: A Danish National Hospital Register Study , 2013, European Thyroid Journal.

[52]  P. Gluckman,et al.  Transcriptome Changes Affecting Hedgehog and Cytokine Signalling in the Umbilical Cord: Implications for Disease Risk , 2012, PloS one.

[53]  Liesbeth Bruckers,et al.  Concept of the Flemish human biomonitoring programme. , 2012, International journal of hygiene and environmental health.

[54]  M. Leichsenring,et al.  Clinical and neurocognitive outcome in symptomatic isovaleric acidemia , 2012, Orphanet Journal of Rare Diseases.

[55]  Stef van Buuren,et al.  MICE: Multivariate Imputation by Chained Equations in R , 2011 .

[56]  C. Weinberg,et al.  On the pitfalls of adjusting for gestational age at birth. , 2011, American journal of epidemiology.

[57]  R. Slama,et al.  Birth Weight and Prenatal Exposure to Polychlorinated Biphenyls (PCBs) and Dichlorodiphenyldichloroethylene (DDE): A Meta-analysis within 12 European Birth Cohorts , 2011, Environmental health perspectives.

[58]  Helga Thorvaldsdóttir,et al.  Molecular signatures database (MSigDB) 3.0 , 2011, Bioinform..

[59]  Paolo Vineis,et al.  Meeting-in-the-middle using metabolic profiling – a strategy for the identification of intermediate biomarkers in cohort studies , 2011, Biomarkers : biochemical indicators of exposure, response, and susceptibility to chemicals.

[60]  A. Astrup,et al.  Deoxyribonucleic acid methylation and gene expression of PPARGC1A in human muscle is influenced by high-fat overfeeding in a birth-weight-dependent manner. , 2010, The Journal of clinical endocrinology and metabolism.

[61]  J. Heindel,et al.  Role of nutrition and environmental endocrine disrupting chemicals during the perinatal period on the aetiology of obesity , 2009, Molecular and Cellular Endocrinology.

[62]  Xingguo Cheng,et al.  Perfluorocarboxylic acids induce cytochrome P450 enzymes in mouse liver through activation of PPAR-alpha and CAR transcription factors. , 2008, Toxicological sciences : an official journal of the Society of Toxicology.

[63]  G. Bonsel,et al.  Maternal n-3, n-6, and trans fatty acid profile early in pregnancy and term birth weight: a prospective cohort study. , 2008, The American journal of clinical nutrition.

[64]  C. Pipper,et al.  [''R"--project for statistical computing]. , 2008, Ugeskrift for laeger.

[65]  D. Barr,et al.  Prenatal Pesticide and PCB Exposures and Birth Outcomes , 2007, Pediatric Research.

[66]  M. Beckmann,et al.  Transplacental exposure of neonates to perfluorooctanesulfonate and perfluorooctanoate: a pilot study , 2007, International archives of occupational and environmental health.

[67]  Jerry Vockley,et al.  Isovaleric acidemia: New aspects of genetic and phenotypic heterogeneity , 2006, American journal of medical genetics. Part C, Seminars in medical genetics.

[68]  A. Covaci,et al.  Optimization of the determination of polybrominated diphenyl ethers in human serum using solid-phase extraction and gas chromatography-electron capture negative ionization mass spectrometry. , 2005, Journal of chromatography. B, Analytical technologies in the biomedical and life sciences.

[69]  Pablo Tamayo,et al.  Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles , 2005, Proceedings of the National Academy of Sciences of the United States of America.

[70]  J. Cerhan,et al.  Epidemiologic Evaluation of Measurement Data in the Presence of Detection Limits , 2004, Environmental Health Perspectives.

[71]  N. Binkin,et al.  Birth weight and childhood growth. , 1988, Pediatrics.

[72]  Norma Helena Perlroth,et al.  Current knowledge of environmental exposure in children during the sensitive developmental periods. , 2017, Jornal de pediatria.

[73]  R. Mendes R: The R Project for Statistical Computing , 2016 .

[74]  I. Hertz-Picciotto,et al.  Prenatal exposure to PCB-153, p,p'-DDE and birth outcomes in 9000 mother-child pairs: exposure-response relationship and effect modifiers. , 2015, Environment international.

[75]  Cheng Li,et al.  Adjusting batch effects in microarray expression data using empirical Bayes methods. , 2007, Biostatistics.

[76]  Susumu Goto,et al.  KEGG: Kyoto Encyclopedia of Genes and Genomes , 2000, Nucleic Acids Res..

[77]  Y. Benjamini,et al.  Controlling the false discovery rate: a practical and powerful approach to multiple testing , 1995 .

[78]  S. Safe,et al.  Polychlorinated biphenyls (PCBs): environmental impact, biochemical and toxic responses, and implications for risk assessment. , 1994, Critical reviews in toxicology.

[79]  Supplemental Information 2: Kyoto Encyclopedia of genes and genomes. , 2022 .