Applications of Deep Learning Techniques for Automated Multiple Sclerosis Detection Using Magnetic Resonance Imaging: A Review

Multiple Sclerosis (MS) is a type of brain disease which causes visual, sensory, and motor problems for people with a detrimental effect on the functioning of the nervous system. In order to diagnose MS, multiple screening methods have been proposed so far; among them, magnetic resonance imaging (MRI) has received considerable attention among physicians. MRI modalities provide physicians with fundamental information about the structure and function of the brain, which is crucial for the rapid diagnosis of MS lesions. Diagnosing MS using MRI is time-consuming, tedious, and prone to manual errors. Research on the implementation of computer aided diagnosis system (CADS) based on artificial intelligence (AI) to diagnose MS involves conventional machine learning and deep learning (DL) methods. In conventional machine learning, feature extraction, feature selection, and classification steps are carried out by using trial and error; on the contrary, these steps in DL are based on deep layers whose values are automatically learn. In this paper, a complete review of automated MS diagnosis methods performed using DL techniques with MRI neuroimaging modalities is provided. Initially, the steps involved in various CADS proposed using MRI modalities and DL techniques for MS diagnosis are investigated. The important preprocessing techniques employed in various works are analyzed. Most of the published papers on MS diagnosis using MRI modalities and DL are presented. The most significant challenges facing and future direction of automated diagnosis of MS using MRI modalities and DL techniques are also provided.

[1]  Wouter van Elmpt,et al.  Overview of artificial intelligence-based applications in radiotherapy: Recommendations for implementation and quality assurance. , 2020 .

[2]  A. Kyritsis,et al.  Multiple sclerosis associated with systemic sclerosis , 2007, Rheumatology International.

[3]  Focal sensory-motor status epilepticus in multiple sclerosis due to a new cortical lesion. An EEG–fMRI co-registration study , 2010, Seizure.

[4]  Majaz Moonis,et al.  Comparison of Deep Learning and Support Vector Machine Learning for Subgroups of Multiple Sclerosis , 2017, ICCSA.

[5]  Andrew Y. Ng,et al.  Zero-Shot Learning Through Cross-Modal Transfer , 2013, NIPS.

[6]  Refaat E Gabr,et al.  Brain and lesion segmentation in multiple sclerosis using fully convolutional neural networks: A large-scale study , 2020, Multiple sclerosis.

[7]  Francisco Herrera,et al.  Artificial intelligence within the interplay between natural and artificial computation: Advances in data science, trends and applications , 2020, Neurocomputing.

[8]  Richard McKinley,et al.  Simultaneous lesion and neuroanatomy segmentation in Multiple Sclerosis using deep neural networks , 2019, ArXiv.

[9]  Josué Luiz Dalboni da Rocha,et al.  Characterization of relapsing-remitting multiple sclerosis patients using support vector machine classifications of functional and diffusion MRI data , 2018, NeuroImage: Clinical.

[10]  Bostjan Likar,et al.  A Review of Methods for Correction of Intensity Inhomogeneity in MRI , 2007, IEEE Transactions on Medical Imaging.

[11]  Joaquim Salvi,et al.  Multiple Sclerosis Lesion Synthesis in MRI Using an Encoder-Decoder U-NET , 2019, IEEE Access.

[12]  Marcel Bengs,et al.  4D Deep Learning for Multiple Sclerosis Lesion Activity Segmentation , 2020, ArXiv.

[13]  Azamossadat Hosseini,et al.  Intelligent Computer Systems for Multiple Sclerosis Diagnosis: a Systematic Review of Reasoning Techniques and Methods , 2018, Acta informatica medica : AIM : journal of the Society for Medical Informatics of Bosnia & Herzegovina : casopis Drustva za medicinsku informatiku BiH.

[14]  Simon Andermatt,et al.  Automated Segmentation of Multiple Sclerosis Lesions Using Multi-dimensional Gated Recurrent Units , 2017, BrainLes@MICCAI.

[15]  Peter A. Calabresi,et al.  Longitudinal multiple sclerosis lesion segmentation data resource , 2017, Data in brief.

[16]  Jan Philipp Albrecht,et al.  Harnessing spatial MRI normalization: patch individual filter layers for CNNs , 2019, ArXiv.

[17]  Guixia Kang,et al.  Cross Attention Densely Connected Networks for Multiple Sclerosis Lesion Segmentation , 2019, 2019 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

[18]  Jose Dolz,et al.  3D fully convolutional networks for subcortical segmentation in MRI: A large-scale study , 2016, NeuroImage.

[19]  Lars T. Westlye,et al.  Multimodal brain-age prediction and cardiovascular risk: The Whitehall II MRI sub-study , 2020, NeuroImage.

[20]  B. Gückel,et al.  Combined PET/MRI: Multi-modality Multi-parametric Imaging Is Here , 2015, Molecular Imaging and Biology.

[21]  Zhenan Sun,et al.  A Review on Generative Adversarial Networks: Algorithms, Theory, and Applications , 2020, IEEE Transactions on Knowledge and Data Engineering.

[22]  Soumen Bag,et al.  CNN-DMRI: A Convolutional Neural Network for Denoising of Magnetic Resonance Images , 2020, Pattern Recognit. Lett..

[23]  Shivajirao M. Jadhav,et al.  Deep convolutional neural network based medical image classification for disease diagnosis , 2019, Journal of Big Data.

[24]  Saeid Nahavandi,et al.  Uncertainty-Aware Semi-Supervised Method Using Large Unlabeled and Limited Labeled COVID-19 Data , 2021, ACM Trans. Multim. Comput. Commun. Appl..

[25]  Yang Gao,et al.  MS-GAN: GAN-Based Semantic Segmentation of Multiple Sclerosis Lesions in Brain Magnetic Resonance Imaging , 2018, 2018 Digital Image Computing: Techniques and Applications (DICTA).

[26]  Refaat E Gabr,et al.  Deep Learning for Predicting Enhancing Lesions in Multiple Sclerosis from Noncontrast MRI. , 2019, Radiology.

[27]  E. Leray,et al.  Rising prevalence of multiple sclerosis worldwide: Insights from the Atlas of MS, third edition , 2020, Multiple sclerosis.

[28]  L. Kappos,et al.  Preferential spinal cord volume loss in primary progressive multiple sclerosis , 2019, Multiple sclerosis.

[29]  A. Mechelli,et al.  Using deep learning to investigate the neuroimaging correlates of psychiatric and neurological disorders: Methods and applications , 2017, Neuroscience & Biobehavioral Reviews.

[30]  W. L. Benedict,et al.  Multiple Sclerosis , 2007, Journal - Michigan State Medical Society.

[31]  D. Arnold,et al.  Effect of natalizumab on disease progression in secondary progressive multiple sclerosis (ASCEND): a phase 3, randomised, double-blind, placebo-controlled trial with an open-label extension , 2018, The Lancet Neurology.

[32]  G. Ebers Environmental factors and multiple sclerosis , 2008, The Lancet Neurology.

[33]  Hans-Ulrich Prokosch,et al.  A scoping review of cloud computing in healthcare , 2015, BMC Medical Informatics and Decision Making.

[34]  Alex Rovira,et al.  Improving automated multiple sclerosis lesion segmentation with a cascaded 3D convolutional neural network approach , 2017, NeuroImage.

[35]  Wen Wei,et al.  Predicting PET-derived myelin content from multisequence MRI for individual longitudinal analysis in multiple sclerosis , 2020, NeuroImage.

[36]  Amir F. Atiya,et al.  Epileptic Seizures Detection Using Deep Learning Techniques: A Review , 2020, International journal of environmental research and public health.

[37]  E. Kahana,et al.  Multiple sclerosis: geoepidemiology, genetics and the environment. , 2010, Autoimmunity reviews.

[38]  Hayit Greenspan,et al.  Longitudinal Multiple Sclerosis Lesion Segmentation Using Multi-view Convolutional Neural Networks , 2016, LABELS/DLMIA@MICCAI.

[39]  Youngjin Yoo,et al.  Hierarchical Multimodal Fusion of Deep-Learned Lesion and Tissue Integrity Features in Brain MRIs for Distinguishing Neuromyelitis Optica from Multiple Sclerosis , 2017, MICCAI.

[40]  Mário João Fartaria,et al.  CVSnet: A machine learning approach for automated central vein sign assessment in multiple sclerosis , 2020, NMR in biomedicine.

[41]  Sheng-Kwei Song,et al.  Deep learning with diffusion basis spectrum imaging for classification of multiple sclerosis lesions , 2020, Annals of clinical and translational neurology.

[42]  Weili Lin,et al.  Graph-Based Deep Learning for Prediction of Longitudinal Infant Diffusion MRI Data , 2019 .

[43]  P. Hluštík 3. Functional MRI in the diagnosis and prognosis of multiple sclerosis , 2015, Clinical Neurophysiology.

[44]  Richard G. Wise,et al.  Neurovascular Coupling During Visual Stimulation in Multiple Sclerosis: A MEG-fMRI Study , 2019, Neuroscience.

[45]  Guixia Kang,et al.  Acu-Net: A 3D Attention Context U-Net for Multiple Sclerosis Lesion Segmentation , 2020, ICASSP 2020 - 2020 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP).

[46]  Debashis Nandi,et al.  A Light Weighted Deep Learning Framework for Multiple Sclerosis Lesion Segmentation , 2019, 2019 Fifth International Conference on Image Information Processing (ICIIP).

[47]  J. Górriz,et al.  Artificial intelligence in radiology: relevance of collaborative work between radiologists and engineers for building a multidisciplinary team. , 2020, Clinical radiology.

[48]  Tom Gundersen,et al.  Nabla-net: A Deep Dag-Like Convolutional Architecture for Biomedical Image Segmentation , 2016, BrainLes@MICCAI.

[49]  Afshin Shoeibi,et al.  A Hierarchical Classification Method for Breast Tumor Detection , 2016 .

[50]  Vittorio Murino,et al.  Deep 2D Encoder-Decoder Convolutional Neural Network for Multiple Sclerosis Lesion Segmentation in Brain MRI , 2018, BrainLes@MICCAI.

[51]  Thomas Brox,et al.  U-Net: Convolutional Networks for Biomedical Image Segmentation , 2015, MICCAI.

[52]  Mingliang Wang,et al.  A Survey on Deep Learning for Neuroimaging-Based Brain Disorder Analysis , 2020, Frontiers in Neuroscience.

[53]  Danilo Comminiello,et al.  A Multimodal Dense U-Net For Accelerating Multiple Sclerosis MRI , 2019, 2019 IEEE 29th International Workshop on Machine Learning for Signal Processing (MLSP).

[54]  Chenxi Huang,et al.  Multiple Sclerosis Identification by 14-Layer Convolutional Neural Network With Batch Normalization, Dropout, and Stochastic Pooling , 2018, Front. Neurosci..

[55]  Giorgio Terracina,et al.  Classification of Multiple Sclerosis Clinical Profiles via Graph Convolutional Neural Networks , 2019, Front. Neurosci..

[56]  Tammy Riklin-Raviv,et al.  Subsampled brain MRI reconstruction by generative adversarial neural networks , 2020, Medical Image Anal..

[57]  Andrea Zaccaria,et al.  Considering patient clinical history impacts performance of machine learning models in predicting course of multiple sclerosis , 2020, PloS one.

[58]  Joaquim Salvi,et al.  One-shot domain adaptation in multiple sclerosis lesion segmentation using convolutional neural networks , 2018, NeuroImage: Clinical.

[59]  Lisa Tang,et al.  Deep Learning of Brain Lesion Patterns for Predicting Future Disease Activity in Patients with Early Symptoms of Multiple Sclerosis , 2016, LABELS/DLMIA@MICCAI.

[60]  P. Maisonneuve,et al.  A Case-Control Study of the Association Between Socio-Demographic, Lifestyle and Medical History Factors and Multiple Sclerosis , 2001, Canadian journal of public health = Revue canadienne de sante publique.

[61]  Yan Hu,et al.  A systematic literature review of cloud computing in eHealth , 2014, ArXiv.

[62]  Stanley Durrleman,et al.  Predicting PET-derived demyelination from multimodal MRI using sketcher-refiner adversarial training for multiple sclerosis , 2019, Medical Image Anal..

[63]  Javier Tejedor,et al.  Deep MultiView Representation Learning for Multi-modal Features of the Schizophrenia and Schizoaffective Disorder , 2016 .

[64]  A. R. Anwar,et al.  Continuous reorganization of cortical information flow in multiple sclerosis: A longitudinal fMRI effective connectivity study , 2020, Scientific Reports.

[65]  E. Dobryakova,et al.  Abnormalities of the executive control network in multiple sclerosis phenotypes: An fMRI effective connectivity study , 2016, Human brain mapping.

[66]  Junyu Dong,et al.  An Overview on Data Representation Learning: From Traditional Feature Learning to Recent Deep Learning , 2016, ArXiv.

[67]  Hayit Greenspan,et al.  Soft Labeling by Distilling Anatomical Knowledge for Improved MS Lesion Segmentation , 2019, 2019 IEEE 16th International Symposium on Biomedical Imaging (ISBI 2019).

[68]  Youngjin Yoo,et al.  Deep learning of brain lesion patterns and user-defined clinical and MRI features for predicting conversion to multiple sclerosis from clinically isolated syndrome , 2019, Comput. methods Biomech. Biomed. Eng. Imaging Vis..

[69]  P. B. Pankajavalli,et al.  A Review on Human Healthcare Internet of Things: A Technical Perspective , 2020, SN Computer Science.

[70]  N. Hattori,et al.  Improving the Quality of Synthetic FLAIR Images with Deep Learning Using a Conditional Generative Adversarial Network for Pixel-by-Pixel Image Translation , 2019, American Journal of Neuroradiology.

[71]  T. Sree Sharmila,et al.  Efficient quality analysis of MRI image using preprocessing techniques , 2013, 2013 IEEE CONFERENCE ON INFORMATION AND COMMUNICATION TECHNOLOGIES.

[72]  A. Brunetti,et al.  Determinants of Deep Gray Matter Atrophy in Multiple Sclerosis: A Multimodal MRI Study , 2019, American Journal of Neuroradiology.

[73]  Aaron Carass,et al.  DeepHarmony: A deep learning approach to contrast harmonization across scanner changes. , 2019, Magnetic resonance imaging.

[74]  José V. Manjón,et al.  A nonparametric MRI inhomogeneity correction method , 2007, Medical Image Anal..

[75]  Morghan Hartmann,et al.  Current review and next steps for artificial intelligence in multiple sclerosis risk research , 2021, Comput. Biol. Medicine.

[76]  M. Eliasziw,et al.  Trial of Minocycline in Clinically Isolated Syndrome of Multiple Sclerosis. , 2017, The New England journal of medicine.

[77]  Raymond Chiong,et al.  Deep learning to detect Alzheimer's disease from neuroimaging: A systematic literature review , 2019, Comput. Methods Programs Biomed..

[78]  M. Filippi,et al.  Brain Structural Changes in Focal Dystonia—What About Task Specificity? A Multimodal MRI Study , 2020, Movement disorders : official journal of the Movement Disorder Society.

[79]  Taranjit Kaur,et al.  Deep convolutional neural networks with transfer learning for automated brain image classification , 2020, Machine Vision and Applications.

[80]  Hui Xiong,et al.  A Comprehensive Survey on Transfer Learning , 2019, Proceedings of the IEEE.

[81]  Michael I. Jordan,et al.  Deep Transfer Learning with Joint Adaptation Networks , 2016, ICML.

[82]  Susana K. Lai-Yuen,et al.  AdaEn-Net: An ensemble of adaptive 2D-3D Fully Convolutional Networks for medical image segmentation , 2020, Neural Networks.

[83]  Erol Kazancli,et al.  Multiple Sclerosis Lesion Segmentation using Improved Convolutional Neural Networks , 2018, VISIGRAPP.

[84]  T. Fog,et al.  [Multiple sclerosis; review]. , 1954, Maanedsskrift for praktisk laegegerning og social Medicin.

[85]  Weihao Weng,et al.  INet: Convolutional Networks for Biomedical Image Segmentation , 2021, IEEE Access.

[86]  Saeid Nahavandi,et al.  An Overview on Artificial Intelligence Techniques for Diagnosis of Schizophrenia Based on Magnetic Resonance Imaging Modalities: Methods, Challenges, and Future Works , 2021, ArXiv.

[87]  Janaina Mourão-Miranda,et al.  Making Individual Prognoses in Psychiatry Using Neuroimaging and Machine Learning. , 2018, Biological psychiatry. Cognitive neuroscience and neuroimaging.

[88]  A. Ascherio Environmental factors in multiple sclerosis , 2013, Expert review of neurotherapeutics.

[89]  W. V. Elmpt,et al.  Overview of artificial intelligence-based applications in radiotherapy: recommendations for implementation and quality assurance. , 2020, Radiotherapy and oncology : journal of the European Society for Therapeutic Radiology and Oncology.

[90]  J. Lechner-Scott,et al.  The emerging role of artificial intelligence in multiple sclerosis imaging , 2020, Multiple sclerosis.

[91]  D. Arnold,et al.  MRI and laboratory features and the performance of international criteria in the diagnosis of multiple sclerosis in children and adolescents: a prospective cohort study. , 2018, The Lancet. Child & adolescent health.

[92]  Nicholas Ayache,et al.  Learning Myelin Content in Multiple Sclerosis from Multimodal MRI through Adversarial Training , 2018, MICCAI.

[93]  Orhan Gazi Yalçın,et al.  Deep Learning and Neural Networks Overview , 2020 .

[94]  Mário João Fartaria,et al.  RimNet: A deep 3D multimodal MRI architecture for paramagnetic rim lesion assessment in multiple sclerosis , 2020, NeuroImage: Clinical.

[95]  Nils Gessert,et al.  Multiple Sclerosis Lesion Activity Segmentation with Attention-Guided Two-Path CNNs , 2020, Comput. Medical Imaging Graph..

[96]  C. Brodley,et al.  Exploration of machine learning techniques in predicting multiple sclerosis disease course , 2017, PloS one.

[97]  Bruce Fischl,et al.  FreeSurfer , 2012, NeuroImage.

[98]  Francisco Jesús Martínez-Murcia,et al.  Convolutional Neural Networks for Neuroimaging in Parkinson's Disease: Is Preprocessing Needed? , 2018, Int. J. Neural Syst..

[99]  Guigang Zhang,et al.  Deep Learning , 2016, Int. J. Semantic Comput..

[100]  B. Weinshenker,et al.  Natural history of multiple sclerosis. , 2005, Neurologic clinics.

[101]  Douglas L. Arnold,et al.  Deep learning segmentation of orbital fat to calibrate conventional MRI for longitudinal studies , 2019, NeuroImage.

[102]  Refaat E Gabr,et al.  Deep learning segmentation of gadolinium-enhancing lesions in multiple sclerosis , 2020, Multiple sclerosis.

[103]  Yudong Zhang,et al.  Multiple sclerosis identification by convolutional neural network with dropout and parametric ReLU , 2018, J. Comput. Sci..

[104]  Craig H. Meyer,et al.  A Self-Adaptive Network for Multiple Sclerosis Lesion Segmentation From Multi-Contrast MRI With Various Imaging Sequences , 2018, 2019 IEEE 16th International Symposium on Biomedical Imaging (ISBI 2019).

[105]  Ana Belén Moreno,et al.  Rician noise attenuation in the wavelet packet transformed domain for brain MRI , 2014, Integr. Comput. Aided Eng..

[106]  Koenraad Van Leemput,et al.  Automated segmentation of multiple sclerosis lesions by model outlier detection , 2001, IEEE Transactions on Medical Imaging.

[107]  Michael Scheel,et al.  Uncovering convolutional neural network decisions for diagnosing multiple sclerosis on conventional MRI using layer-wise relevance propagation , 2019, NeuroImage: Clinical.

[108]  Danica Kragic,et al.  Deep Representation Learning for Human Motion Prediction and Classification , 2017, 2017 IEEE Conference on Computer Vision and Pattern Recognition (CVPR).

[109]  Mark Mühlau,et al.  Predicting conversion from clinically isolated syndrome to multiple sclerosis–An imaging-based machine learning approach , 2018, NeuroImage: Clinical.

[110]  Julien Cohen-Adad,et al.  Automatic segmentation of the spinal cord and intramedullary multiple sclerosis lesions with convolutional neural networks , 2018, NeuroImage.

[111]  Jorge R Oksenberg,et al.  Multiple sclerosis genetics , 2018, Multiple sclerosis.

[112]  H. Offner,et al.  A blood test for multiple sclerosis. , 1977, The New England journal of medicine.

[113]  Ava Assadi Abolvardi,et al.  Registration Based Data Augmentation for Multiple Sclerosis Lesion Segmentation , 2019, 2019 Digital Image Computing: Techniques and Applications (DICTA).

[114]  Meritxell Bach Cuadra,et al.  Shallow vs deep learning architectures for white matter lesion segmentation in the early stages of multiple sclerosis , 2018, BrainLes@MICCAI.

[115]  Michael Hutchinson,et al.  Machine Learning EEG to Predict Cognitive Functioning and Processing Speed Over a 2-Year Period in Multiple Sclerosis Patients and Controls , 2018, Brain Topography.

[116]  Melvin Robinson,et al.  Multimodal MRI Segmentation of Brain Tissue and T2-Hyperintense White Matter Lesions in Multiple Sclerosis using Deep Convolutional Neural Networks and a Large Multi-center Image Database , 2018, 2018 9th Cairo International Biomedical Engineering Conference (CIBEC).

[117]  A. Brickman,et al.  Classifying multiple sclerosis patients on the basis of SDMT performance using machine learning , 2020, Multiple sclerosis.

[118]  Alessia Sarica,et al.  Evaluation of machine learning algorithms performance for the prediction of early multiple sclerosis from resting-state FMRI connectivity data , 2018, Brain Imaging and Behavior.

[119]  Philipp M. Keune,et al.  Exploring resting-state EEG brain oscillatory activity in relation to cognitive functioning in multiple sclerosis , 2017, Clinical Neurophysiology.

[120]  Chunyan Miao,et al.  A Survey of Zero-Shot Learning , 2019, ACM Trans. Intell. Syst. Technol..

[121]  R. Ordidge,et al.  High field MRI correlates of myelin content and axonal density in multiple sclerosis , 2003, Journal of Neurology.

[122]  Saeid Nahavandi,et al.  Coronary artery disease detection using artificial intelligence techniques: A survey of trends, geographical differences and diagnostic features 1991-2020 , 2020, Comput. Biol. Medicine.

[123]  Matthew J. Brookes,et al.  Abnormal task driven neural oscillations in multiple sclerosis: A visuomotor MEG study , 2017, Human brain mapping.

[124]  Yi Wang,et al.  RSANet: Recurrent Slice-Wise Attention Network for Multiple Sclerosis Lesion Segmentation , 2019, MICCAI.

[125]  Richard McKinley,et al.  Automatic detection of lesion load change in Multiple Sclerosis using convolutional neural networks with segmentation confidence , 2019, NeuroImage: Clinical.

[126]  Peter A. Calabresi,et al.  Multiple Sclerosis Lesion Segmentation from Brain MRI via Fully Convolutional Neural Networks , 2018, ArXiv.

[127]  Enrico Pellegrini,et al.  Machine learning of neuroimaging for assisted diagnosis of cognitive impairment and dementia: A systematic review , 2018, Alzheimer's & dementia.

[128]  Chao Yang,et al.  A Survey on Deep Transfer Learning , 2018, ICANN.

[129]  Ghassan Hamarneh,et al.  Scanner Invariant Multiple Sclerosis Lesion Segmentation from MRI , 2019, 2020 IEEE 17th International Symposium on Biomedical Imaging (ISBI).

[130]  M. Arif Wani,et al.  Advances in Deep Learning , 2020 .

[131]  Farahnaz Sadoughi,et al.  Internet of things in medicine: A systematic mapping study , 2020, J. Biomed. Informatics.

[132]  K. Blennow,et al.  Cerebrospinal fluid biomarkers as a measure of disease activity and treatment efficacy in relapsing‐remitting multiple sclerosis , 2017, Journal of neurochemistry.

[133]  Mark W. Woolrich,et al.  FSL , 2012, NeuroImage.

[134]  M. Harirchian,et al.  Worldwide prevalence of familial multiple sclerosis: A systematic review and meta-analysis. , 2018, Multiple sclerosis and related disorders.

[135]  C. Granziera,et al.  Accurate, rapid and reliable, fully automated MRI brainstem segmentation for application in multiple sclerosis and neurodegenerative diseases , 2019, Human brain mapping.

[136]  Roger C. Tam,et al.  Deep learning of joint myelin and T1w MRI features in normal-appearing brain tissue to distinguish between multiple sclerosis patients and healthy controls , 2017, NeuroImage: Clinical.

[137]  Saeid Nahavandi,et al.  Deep Learning for Neuroimaging-based Diagnosis and Rehabilitation of Autism Spectrum Disorder: A Review , 2020, Comput. Biol. Medicine.

[138]  B M J Uitdehaag,et al.  Exercise Therapy for Multiple Sclerosis , 2022 .

[139]  C. Solano,et al.  Autologous hematopoietic stem cell transplantation in relapsing-remitting multiple sclerosis: comparison with secondary progressive multiple sclerosis , 2017, Neurological Sciences.

[140]  B. Weinshenker,et al.  Epidemiology of multiple sclerosis. , 1996, Neurologic clinics.

[141]  Mohammad Reza Daliri,et al.  Computer Aided Diagnosis System for multiple sclerosis disease based on phase to amplitude coupling in covert visual attention , 2019, Comput. Methods Programs Biomed..

[142]  U. Rajendra Acharya,et al.  Application of deep transfer learning for automated brain abnormality classification using MR images , 2019, Cognitive Systems Research.

[143]  Tal Arbel,et al.  CNN Detection of New and Enlarging Multiple Sclerosis Lesions from Longitudinal Mri Using Subtraction Images , 2020, 2020 IEEE 17th International Symposium on Biomedical Imaging (ISBI).

[144]  M. Wiberg,et al.  Validation of Rapid Magnetic Resonance Myelin Imaging in Multiple Sclerosis , 2020, Annals of neurology.

[145]  Peter A Calabresi,et al.  Diagnosis and management of multiple sclerosis. , 2004, American family physician.

[146]  Quanying Liu,et al.  Machine learning applications on neuroimaging for diagnosis and prognosis of epilepsy: A review , 2021, Journal of Neuroscience Methods.

[147]  M. Aiello,et al.  Gliosis and Neurodegenerative Diseases: The Role of PET and MR Imaging , 2020, Frontiers in Cellular Neuroscience.

[148]  D. Arnold,et al.  Identifying multiple sclerosis subtypes using unsupervised machine learning and MRI data , 2021, Nature Communications.

[149]  L. Kappos,et al.  Long-term outcomes with teriflunomide in patients with clinically isolated syndrome: Results of the TOPIC extension study★★. , 2019, Multiple sclerosis and related disorders.

[150]  Tal Hassner,et al.  CNN Prediction of Future Disease Activity for Multiple Sclerosis Patients from Baseline MRI and Lesion Labels , 2018, BrainLes@MICCAI.

[151]  P. Striano,et al.  Epileptic seizures in multiple sclerosis: clinical and EEG correlations , 2003, Neurological Sciences.

[152]  Simon K. Warfield,et al.  Asymmetric Loss Functions and Deep Densely-Connected Networks for Highly-Imbalanced Medical Image Segmentation: Application to Multiple Sclerosis Lesion Detection , 2018, IEEE Access.

[153]  M. Rovaris,et al.  Long-term disability progression in primary progressive multiple sclerosis: a 15-year study , 2017, Brain : a journal of neurology.

[154]  M. Gustafsson,et al.  Therapeutic efficacy of dimethyl fumarate in relapsing-remitting multiple sclerosis associates with ROS pathway in monocytes , 2019, Nature Communications.

[155]  John Ashburner,et al.  Computational anatomy with the SPM software. , 2009, Magnetic resonance imaging.

[156]  Genetic factors in multiple sclerosis. , 1993, JAMA.

[157]  M. Teshnehlab,et al.  Diagnosing and Classification Tumors and MS Simultaneous of Magnetic Resonance Images Using Convolution Neural Network* , 2019, 2019 7th Iranian Joint Congress on Fuzzy and Intelligent Systems (CFIS).

[158]  B. Sharrack,et al.  Effect of Nonmyeloablative Hematopoietic Stem Cell Transplantation vs Continued Disease-Modifying Therapy on Disease Progression in Patients With Relapsing-Remitting Multiple Sclerosis: A Randomized Clinical Trial , 2019, JAMA.

[159]  Meritxell Bach Cuadra,et al.  Automated Detection of Cortical Lesions in Multiple Sclerosis Patients with 7T MRI , 2020, MICCAI.

[160]  Jeannette Lechner-Scott,et al.  Automatic and Robust Segmentation of Multiple Sclerosis Lesions with Convolutional Neural Networks , 2020, Computers, Materials & Continua.

[161]  Joseph Paul Cohen,et al.  Automatic segmentation of spinal multiple sclerosis lesions: How to generalize across MRI contrasts? , 2020, ArXiv.

[162]  Héctor Allende,et al.  Circular Non-uniform Sampling Patch Inputs for CNN Applied to Multiple Sclerosis Lesion Segmentation , 2018, CIARP.

[163]  Si Zhang,et al.  Graph convolutional networks: a comprehensive review , 2019, Computational Social Networks.

[164]  Saeid Nahavandi,et al.  Applications of Epileptic Seizures Detection in Neuroimaging Modalities Using Deep Learning Techniques: Methods, Challenges, and Future Works , 2021, ArXiv.

[165]  S. Ourselin,et al.  A 30‐Year Clinical and Magnetic Resonance Imaging Observational Study of Multiple Sclerosis and Clinically Isolated Syndromes , 2019, Annals of neurology.

[166]  R. Guillevin,et al.  Learning a CNN on multiple sclerosis lesion segmentation with self-supervision , 2020, 3DMDP.

[167]  P. Auerbach,et al.  A blood test for multiple sclerosis based on the adherence of lymphocytes to measles-infected cells. , 1976, The New England journal of medicine.

[168]  Christophe Collet,et al.  Unifying framework for multimodal brain MRI segmentation based on Hidden Markov Chains , 2008, Medical Image Anal..

[169]  Khalid Raza,et al.  Medical Image Generation Using Generative Adversarial Networks: A Review , 2021, Health Informatics.

[170]  Christian Federau,et al.  Latent Space Analysis of VAE and Intro-VAE applied to 3-dimensional MR Brain Volumes of Multiple Sclerosis, Leukoencephalopathy, and Healthy Patients , 2021, ArXiv.

[171]  Joaquim Salvi,et al.  A fully convolutional neural network for new T2-w lesion detection in multiple sclerosis , 2019, NeuroImage: Clinical.

[172]  Classification of Pituitary Tumor and Multiple Sclerosis Brain Lesions through Convolutional Neural Networks , 2021 .

[173]  Saeid Nahavandi,et al.  Fusion of convolution neural network, support vector machine and Sobel filter for accurate detection of COVID-19 patients using X-ray images , 2021, Biomedical Signal Processing and Control.

[174]  David H. Miller,et al.  Diagnosis of multiple sclerosis: progress and challenges , 2017, The Lancet.

[175]  J. Arrazola,et al.  Structural MRI correlates of PASAT performance in multiple sclerosis , 2018, BMC Neurology.

[176]  Debashis Nandi,et al.  A Dense U-Net Architecture for Multiple Sclerosis Lesion Segmentation , 2019, TENCON 2019 - 2019 IEEE Region 10 Conference (TENCON).

[177]  Peter D. Chang,et al.  SynergyNet: A Fusion Framework for Multiple Sclerosis Brain MRI Segmentation with Local Refinement , 2020, 2020 IEEE 17th International Symposium on Biomedical Imaging (ISBI).

[178]  X. Bosch Multiple Sclerosis: The History of a Disease , 2005 .

[179]  Snehashis Roy,et al.  Longitudinal multiple sclerosis lesion segmentation: Resource and challenge , 2017, NeuroImage.

[180]  A. Alavi,et al.  Role of FDG-PET in the Clinical Management of Paraneoplastic Neurological Syndrome: Detection of the Underlying Malignancy and the Brain PET-MRI Correlates , 2008, Molecular Imaging and Biology.

[181]  S. Gabriel,et al.  Risk alleles for multiple sclerosis identified by a genomewide study. , 2007, The New England journal of medicine.

[182]  G. Wylie,et al.  Examination of Cognitive Fatigue in Multiple Sclerosis using Functional Magnetic Resonance Imaging and Diffusion Tensor Imaging , 2013, PloS one.

[183]  Maria Assunta Rocca,et al.  Multi-branch convolutional neural network for multiple sclerosis lesion segmentation , 2018, NeuroImage.

[184]  J. Kurtzke,et al.  Survival in multiple sclerosis. , 1989, Journal of clinical epidemiology.

[185]  Yang Lei,et al.  A review on medical imaging synthesis using deep learning and its clinical applications , 2020, Journal of applied clinical medical physics.

[186]  Trevor Darrell,et al.  Fully Convolutional Networks for Semantic Segmentation , 2017, IEEE Transactions on Pattern Analysis and Machine Intelligence.

[187]  Navid Ghassemi,et al.  Deep neural network with generative adversarial networks pre-training for brain tumor classification based on MR images , 2020, Biomed. Signal Process. Control..

[188]  Jin Liu,et al.  Applications of deep learning to MRI images: A survey , 2018, Big Data Min. Anal..

[189]  M. Schoonheim,et al.  Reduced Network Dynamics on Functional MRI Signals Cognitive Impairment in Multiple Sclerosis. , 2019, Radiology.

[190]  Ali Sunyaev,et al.  Context matters: A review of the determinant factors in the decision to adopt cloud computing in healthcare , 2019, Int. J. Inf. Manag..

[191]  D. Louis Collins,et al.  Review of automatic segmentation methods of multiple sclerosis white matter lesions on conventional magnetic resonance imaging , 2013, Medical Image Anal..

[192]  Peixian Zhuang,et al.  Compressed Sensing MRI via a Multi-scale Dilated Residual Convolution Network , 2019, Magnetic resonance imaging.

[193]  M. Benedetti,et al.  Primary progressive multiple sclerosis: current therapeutic strategies and future perspectives , 2017, Expert review of neurotherapeutics.

[194]  Jinbo Huang,et al.  Internet of things in health management systems: A review , 2020, Int. J. Commun. Syst..

[195]  R. Wiest,et al.  Simultaneous lesion and brain segmentation in multiple sclerosis using deep neural networks , 2021, Scientific Reports.

[196]  R. Dardennes,et al.  Depression and multiple sclerosis , 1997, European Psychiatry.

[197]  Hyunjin Park,et al.  FuNP (Fusion of Neuroimaging Preprocessing) Pipelines: A Fully Automated Preprocessing Software for Functional Magnetic Resonance Imaging , 2019, Front. Neuroinform..

[198]  Refaat E Gabr,et al.  Are multi-contrast magnetic resonance images necessary for segmenting multiple sclerosis brains? A large cohort study based on deep learning. , 2020, Magnetic resonance imaging.

[199]  John Suckling,et al.  Deep Learning in current Neuroimaging: a multivariate approach with power and type I error control but arguable generalization ability , 2021, 2103.16685.

[200]  Refaat E Gabr,et al.  Deep‐Learning‐Based Neural Tissue Segmentation of MRI in Multiple Sclerosis: Effect of Training Set Size , 2020, Journal of magnetic resonance imaging : JMRI.

[201]  D. Franciotta,et al.  An update on the use of cerebrospinal fluid analysis as a diagnostic tool in multiple sclerosis , 2017, Expert review of molecular diagnostics.

[202]  Martin Styner,et al.  Objective Evaluation of Multiple Sclerosis Lesion Segmentation using a Data Management and Processing Infrastructure , 2018, bioRxiv.

[203]  Mehmet Feyzi Aksahin,et al.  Detection of multiple sclerosis from photic stimulation EEG signals , 2021, Biomed. Signal Process. Control..

[204]  B. Ginneken,et al.  3D Segmentation in the Clinic: A Grand Challenge , 2007 .

[205]  Hayit Greenspan,et al.  Multi-view longitudinal CNN for multiple sclerosis lesion segmentation , 2017, Eng. Appl. Artif. Intell..

[206]  Giorgio Terracina,et al.  Graph based neural networks for automatic classification of multiple sclerosis clinical courses , 2018, ESANN.

[207]  Doina Precup,et al.  Exploring Uncertainty Measures in Deep Networks for Multiple Sclerosis Lesion Detection and Segmentation , 2018, MICCAI.

[208]  Rubiyah Yusof,et al.  Image Segmentation Methods and Applications in MRI Brain Images , 2015 .

[209]  Mário João Fartaria,et al.  Multiple sclerosis cortical and WM lesion segmentation at 3T MRI: a deep learning method based on FLAIR and MP2RAGE , 2020, NeuroImage: Clinical.

[210]  Alireza Nikravanshalmani,et al.  Multiple sclerosis identification in brain MRI images using wavelet convolutional neural networks , 2020, Int. J. Imaging Syst. Technol..

[211]  Bjoern H Menze,et al.  Deep-Learning Generated Synthetic Double Inversion Recovery Images Improve Multiple Sclerosis Lesion Detection , 2020, Investigative radiology.

[212]  Nicolas Courty,et al.  Unsupervised Domain Adaptation With Optimal Transport in Multi-Site Segmentation of Multiple Sclerosis Lesions From MRI Data , 2020, Frontiers in Computational Neuroscience.

[213]  M. Z. Rashad,et al.  Neuro-fuzzy patch-wise R-CNN for multiple sclerosis segmentation , 2020, Medical & Biological Engineering & Computing.

[214]  R. Opfer,et al.  Fully automated longitudinal segmentation of new or enlarged multiple sclerosis lesions using 3D convolutional neural networks , 2020, NeuroImage: Clinical.

[215]  Amir F. Atiya,et al.  Handling of uncertainty in medical data using machine learning and probability theory techniques: a review of 30 years (1991–2020) , 2020, Annals of operations research.

[216]  Lisa Tang,et al.  Deep 3D Convolutional Encoder Networks With Shortcuts for Multiscale Feature Integration Applied to Multiple Sclerosis Lesion Segmentation , 2016, IEEE Transactions on Medical Imaging.

[217]  Doina Precup,et al.  Prediction of Disease Progression in Multiple Sclerosis Patients using Deep Learning Analysis of MRI Data , 2019, MIDL.

[218]  Daniel L. Rubin,et al.  Deep Learning for Brain MRI Segmentation: State of the Art and Future Directions , 2017, Journal of Digital Imaging.

[219]  Arash Kamali,et al.  Automated image quality evaluation of structural brain MRI using an ensemble of deep learning networks , 2019, Journal of magnetic resonance imaging : JMRI.

[220]  Giorgio Terracina,et al.  Prediction of Multiple Sclerosis Patient Disability from Structural Connectivity using Convolutional Neural Networks , 2019, 2019 41st Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC).

[221]  Jun Qi,et al.  Deep multi-view representation learning for multi-modal features of the schizophrenia and schizo-affective disorder , 2016, 2016 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP).

[222]  M. Ciaccio,et al.  Cerebrospinal Fluid Analysis in Multiple Sclerosis Diagnosis: An Update , 2019, Medicina.

[223]  D. Ontaneda,et al.  Diagnosis and Management of Progressive Multiple Sclerosis , 2019, Biomedicines.

[224]  Navid Ghassemi,et al.  Automatic diagnosis of COVID-19 from CT images using CycleGAN and transfer learning , 2021, Applied Soft Computing.

[225]  L. Kappos,et al.  Neurofilament light chain serum levels correlate with 10‐year MRI outcomes in multiple sclerosis , 2018, Annals of clinical and translational neurology.

[226]  Zhenzhong Liu,et al.  Review of Deep Learning Approaches for the Segmentation of Multiple Sclerosis Lesions on Brain MRI , 2020, Frontiers in Neuroinformatics.

[227]  O. Commowick,et al.  Artificial intelligence to predict clinical disability in patients with multiple sclerosis using FLAIR MRI. , 2020, Diagnostic and interventional imaging.

[228]  S. Nahavandi,et al.  Automated Detection and Forecasting of COVID-19 using Deep Learning Techniques: A Review , 2020, ArXiv.

[229]  G. Wylie,et al.  The Role of Premotor Areas in Dual Tasking in Healthy Controls and Persons With Multiple Sclerosis: An fNIRS Imaging Study , 2018, Front. Behav. Neurosci..

[230]  Ludwig Kappos,et al.  Siponimod versus placebo in secondary progressive multiple sclerosis (EXPAND): a double-blind, randomised, phase 3 study , 2018, The Lancet.

[231]  Héctor Allende,et al.  Improving Multiple Sclerosis Lesion Boundaries Segmentation by Convolutional Neural Networks with Focal Learning , 2020, ICIAR.

[232]  Suhuai Luo,et al.  Automatic Prediction of the Conversion of Clinically Isolated Syndrome to Multiple Sclerosis Using Deep Learning , 2018, ICVIP.

[233]  Caterina Mainero,et al.  fMRI evidence of brain reorganization during attention and memory tasks in multiple sclerosis , 2004, NeuroImage.