In-depth proteomic analysis of a mollusc shell: acid-soluble and acid-insoluble matrix of the limpet Lottia gigantea
暂无分享,去创建一个
[1] Inna Dubchak,et al. The Genome Portal of the Department of Energy Joint Genome Institute , 2011, Nucleic Acids Res..
[2] O. Galzitskaya,et al. Occurrence of disordered patterns and homorepeats in eukaryotic and bacterial proteomes. , 2012, Molecular bioSystems.
[3] Norman E. Davey,et al. Attributes of short linear motifs. , 2012, Molecular bioSystems.
[4] H. Nagasawa,et al. Identification and Characterisation of a Calcium Carbonate‐Binding Protein, Blue Mussel Shell Protein (BMSP), from the Nacreous Layer , 2011, Chembiochem : a European journal of chemical biology.
[5] V. Smith. Phylogeny of whey acidic protein (WAP) four-disulfide core proteins and their role in lower vertebrates and invertebrates. , 2011, Biochemical Society transactions.
[6] S. Weiner,et al. Formation of Aragonite Crystals in the Crossed Lamellar Microstructure of Limpet Shells , 2011 .
[7] Kaoru Maeyama,et al. Deep Sequencing of ESTs from Nacreous and Prismatic Layer Producing Tissues and a Screen for Novel Shell Formation-Related Genes in the Pearl Oyster , 2011, PloS one.
[8] M. Mann,et al. Quantitative, high-resolution proteomics for data-driven systems biology. , 2011, Annual review of biochemistry.
[9] I. Zanella-Cléon,et al. Molecular Evolution of Mollusc Shell Proteins: Insights from Proteomic Analysis of the Edible Mussel Mytilus , 2011, Journal of Molecular Evolution.
[10] Benjamin Marie,et al. Novel Proteins from the Calcifying Shell Matrix of the Pacific Oyster Crassostrea gigas , 2011, Marine Biotechnology.
[11] Arul Marie,et al. Coupling Proteomics and Transcriptomics for the Identification of Novel and Variant Forms of Mollusk Shell Proteins: A Study with P. margaritifera , 2011, Chembiochem : a European journal of chemical biology.
[12] M. Mann,et al. Andromeda: a peptide search engine integrated into the MaxQuant environment. , 2011, Journal of proteome research.
[13] M. Fritz,et al. Gastropod nacre: structure, properties and growth--biological, chemical and physical basics. , 2011, Biophysical chemistry.
[14] Benjamin Marie,et al. Proteomic Identification of Novel Proteins from the Calcifying Shell Matrix of the Manila Clam Venerupis Philippinarum , 2011, Marine Biotechnology.
[15] Benjamin Marie,et al. Proteomic analysis of the organic matrix of the abalone Haliotis asinina calcified shell , 2010, Proteome Science.
[16] Benjamin Marie,et al. Transcriptome and proteome analysis of Pinctada margaritifera calcifying mantle and shell: focus on biomineralization , 2010, BMC Genomics.
[17] Benjamin Marie,et al. Proteomic Analysis of the Acid‐Soluble Nacre Matrix of the Bivalve Unio pictorum: Detection of Novel Carbonic Anhydrase and Putative Protease Inhibitor Proteins , 2010, Chembiochem : a European journal of chemical biology.
[18] J. Evans,et al. Intrinsically disordered mollusk shell prismatic protein that modulates calcium carbonate crystal growth. , 2010, Biomacromolecules.
[19] J. Evans,et al. The N- and C-terminal regions of the pearl-associated EF hand protein, PFMG1, promote the formation of the aragonite polymorph in vitro , 2010 .
[20] K. Saruwatari,et al. Characterization of the multilayered shell of a limpet, Lottia kogamogai (Mollusca: Patellogastropoda), using SEM-EBSD and FIB-TEM techniques. , 2010, Journal of structural biology.
[21] A. Poustka,et al. Proteomic analysis of sea urchin (Strongylocentrotus purpuratus) spicule matrix , 2010, Proteome Science.
[22] Michael Kube,et al. Parallel evolution of nacre building gene sets in molluscs. , 2010, Molecular biology and evolution.
[23] J. Evans,et al. Matrix Interactions in Biomineralization: Aragonite Nucleation by an Intrinsically Disordered Nacre Polypeptide, n16N, Associated with a β-Chitin Substrate , 2010 .
[24] W. Lehmann,et al. De novo sequencing of peptides by MS/MS , 2010, Proteomics.
[25] M. Dunn. PROTEOMICS: Ten years in the field , 2010, Proteomics.
[26] Yilin Hu,et al. Calcineurin Plays an Important Role in the Shell Formation of Pearl Oyster (Pinctada fucata) , 2010, Marine Biotechnology.
[27] Matthias Mann,et al. A Dual Pressure Linear Ion Trap Orbitrap Instrument with Very High Sequencing Speed* , 2009, Molecular & Cellular Proteomics.
[28] Takashi Kato,et al. An Acidic Matrix Protein, Pif, Is a Key Macromolecule for Nacre Formation , 2009, Science.
[29] B. Marie,et al. Evolution of Nacre: Biochemistry and Proteomics of the Shell Organic Matrix of the Cephalopod Nautilus macromphalus , 2009, Chembiochem : a European journal of chemical biology.
[30] Yilin Hu,et al. Cloning, characterization and immunolocalization of two subunits of calcineurin from pearl oyster (Pinctada fucata). , 2009, Comparative biochemistry and physiology. Part B, Biochemistry & molecular biology.
[31] J. Evans,et al. Polyelectrolyte domains and intrinsic disorder within the prismatic Asprich protein family. , 2009, Biochemistry.
[32] J. Evans,et al. AP7, a partially disordered pseudo C-RING protein, is capable of forming stabilized aragonite in vitro. , 2009, Biochemistry.
[33] Jürgen Cox,et al. A practical guide to the MaxQuant computational platform for SILAC-based quantitative proteomics , 2009, Nature Protocols.
[34] M. Mann,et al. In-depth, high-accuracy proteomics of sea urchin tooth organic matrix , 2008 .
[35] M. Mann,et al. MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification , 2008, Nature Biotechnology.
[36] John Spencer Evans,et al. "Tuning in" to mollusk shell nacre- and prismatic-associated protein terminal sequences. Implications for biomineralization and the construction of high performance inorganic-organic composites. , 2008, Chemical reviews.
[37] M. Mann,et al. The sea urchin (Strongylocentrotus purpuratus) test and spine proteomes , 2008, Proteome Science.
[38] R. Reinhardt,et al. Increasing genomic information in bivalves through new EST collections in four species: development of new genetic markers for environmental studies and genome evolution. , 2008, Gene.
[39] Michiko Norizuki,et al. Distribution and Function of the Nacrein-Related Proteins Inferred from Structural Analysis , 2008, Marine Biotechnology.
[40] I. Weiss,et al. The structure of mollusc larval shells formed in the presence of the chitin synthase inhibitor Nikkomycin Z , 2007, BMC Structural Biology.
[41] H. Nagasawa,et al. Identification of Chitin in the Prismatic Layer of the Shell and a Chitin Synthase Gene from the Japanese Pearl Oyster, Pinctada fucata , 2007, Bioscience, biotechnology, and biochemistry.
[42] Arul Marie,et al. Proteomics Analysis of the Nacre Soluble and Insoluble Proteins from the Oyster Pinctada margaritifera , 2007, Marine Biotechnology.
[43] A. George,et al. Dentin Matrix Protein 4, a Novel Secretory Calcium-binding Protein That Modulates Odontoblast Differentiation* , 2007, Journal of Biological Chemistry.
[44] Masato Yano,et al. Tyrosinase localization in mollusc shells. , 2007, Comparative biochemistry and physiology. Part B, Biochemistry & molecular biology.
[45] M. Mann,et al. In-gel digestion for mass spectrometric characterization of proteins and proteomes , 2006, Nature Protocols.
[46] M. Mann,et al. Protocol for micro-purification, enrichment, pre-fractionation and storage of peptides for proteomics using StageTips , 2007, Nature Protocols.
[47] G. Lanfranchi,et al. Development of mussel mRNA profiling: Can gene expression trends reveal coastal water pollution? , 2006, Mutation research.
[48] Gert Wörheide,et al. A rapidly evolving secretome builds and patterns a sea shell , 2006, BMC Biology.
[49] M. Fritz,et al. Perlwapin, an abalone nacre protein with three four-disulfide core (whey acidic protein) domains, inhibits the growth of calcium carbonate crystals. , 2006, Biophysical journal.
[50] Jesper V Olsen,et al. Proteomic analysis of the acid‐soluble organic matrix of the chicken calcified eggshell layer , 2006, Proteomics.
[51] Masato Yano,et al. Shematrin: a family of glycine-rich structural proteins in the shell of the pearl oyster Pinctada fucata. , 2006, Comparative biochemistry and physiology. Part B, Biochemistry & molecular biology.
[52] Cen Zhang,et al. A novel putative tyrosinase involved in periostracum formation from the pearl oyster (Pinctada fucata). , 2006, Biochemical and biophysical research communications.
[53] I. Weiss,et al. The distribution of chitin in larval shells of the bivalve mollusk Mytilus galloprovincialis. , 2006, Journal of structural biology.
[54] C. Coustau,et al. Compatibility in the Biomphalaria glabrata/Echinostoma caproni model: potential involvement of adhesion genes. , 2006, International journal for parasitology.
[55] Steve Weiner,et al. Mollusk shell formation: a source of new concepts for understanding biomineralization processes. , 2006, Chemistry.
[56] S. Chiba,et al. Molecular Evolution and Functionally Important Structures of Molluscan Dermatopontin: Implications for the Origins of Molluscan Shell Matrix Proteins , 2006, Journal of Molecular Evolution.
[57] M. Mann,et al. Exponentially Modified Protein Abundance Index (emPAI) for Estimation of Absolute Protein Amount in Proteomics by the Number of Sequenced Peptides per Protein*S , 2005, Molecular & Cellular Proteomics.
[58] S. Weiner,et al. Asprich: A Novel Aspartic Acid‐Rich Protein Family from the Prismatic Shell Matrix of the Bivalve Atrina rigida , 2005, Chembiochem : a European journal of chemical biology.
[59] M. Mann,et al. The abc's (and xyz's) of peptide sequencing , 2004, Nature Reviews Molecular Cell Biology.
[60] I. Sarashina,et al. Structure and expression of an unusually acidic matrix protein of pearl oyster shells. , 2004, Biochemical and biophysical research communications.
[61] J. Marxen,et al. The major soluble 19.6 kDa protein of the organic shell matrix of the freshwater snail Biomphalaria glabrata is an N-glycosylated dermatopontin. , 2003, Biochimica et biophysica acta.
[62] T. Miyashita,et al. Similarities in the structure of nacrein, the shell-matrix protein, in a bivalve and a gastropod , 2003 .
[63] R. Takagi,et al. Identical carbonic anhydrase contributes to nacreous or prismatic layer formation in Pinctada fucata (Mollusca : Bivalvia) , 2002 .
[64] M. Fritz,et al. Perlustrin, a Haliotis laevigata (abalone) nacre protein, is homologous to the insulin-like growth factor binding protein N-terminal module of vertebrates. , 2001, Biochemical and biophysical research communications.
[65] D. Sane,et al. Arterial calcification: A review of mechanisms, animal models, and the prospects for therapy , 2001, Medicinal research reviews.
[66] S. Weiner,et al. Structure of the nacreous organic matrix of a bivalve mollusk shell examined in the hydrated state using cryo-TEM. , 2001, Journal of structural biology.
[67] M. Fritz,et al. The amino-acid sequence of the abalone (Haliotis laevigata) nacre protein perlucin. Detection of a functional C-type lectin domain with galactose/mannose specificity. , 2000, European journal of biochemistry.
[68] S. Tsuda,et al. Chitin-binding Proteins in Invertebrates and Plants Comprise a Common Chitin-binding Structural Motif* , 2000, The Journal of Biological Chemistry.
[69] M. Fritz,et al. Purification and characterization of perlucin and perlustrin, two new proteins from the shell of the mollusc Haliotis laevigata. , 2000, Biochemical and biophysical research communications.
[70] Zhicheng Shen,et al. Evolution of Chitin-Binding Proteins in Invertebrates , 1999, Journal of Molecular Evolution.
[71] I. SlnasurNA,et al. Primary structure of a soluble matrix protein of scallop shell: Implications for calcium carbonate biomineralization , 1998 .
[72] P. Hansma,et al. Molecular Cloning and Characterization of Lustrin A, a Matrix Protein from Shell and Pearl Nacre of Haliotis rufescens * , 1997, The Journal of Biological Chemistry.
[73] T Morita,et al. A carbonic anhydrase from the nacreous layer in oyster pearls. , 1996, Proceedings of the National Academy of Sciences of the United States of America.
[74] R. Timpl,et al. Cloning and complete amino acid sequences of human and murine basement membrane protein BM‐40 (SPARC, osteonectin) , 1988, FEBS letters.
[75] R. Timpl,et al. Solubilization of protein BM‐40 from a basement membrane tumor with cheating agents and evidence for its identity with osteonectin and SPARC , 1987, FEBS letters.
[76] P. Bornstein,et al. Characterization of a novel serum albumin-binding glycoprotein secreted by endothelial cells in culture. , 1984, The Journal of biological chemistry.
[77] H. Kleinman,et al. Osteonectin, a bone-specific protein linking mineral to collagen , 1981, Cell.
[78] W. Peters. Occurrence of chitin in mollusca , 1972 .