Gene loss and genome rearrangement in the plastids of five Hemiparasites in the family Orobanchaceae
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[1] G. Serino,et al. Plastid transformation in Arabidopsis thaliana , 2019, Plant Cell Reports.
[2] K. Han,et al. Complete chloroplast genome sequence of Pedicularis cheilanthifolia, an alpine plant in China , 2017, Conservation Genetics Resources.
[3] P. Taberlet,et al. Understanding the evolution of holoparasitic plants: the complete plastid genome of the holoparasite Cytinus hypocistis (Cytinaceae). , 2016, Annals of botany.
[4] M. Logacheva,et al. Comparative analysis of plastid genomes of non-photosynthetic Ericaceae and their photosynthetic relatives , 2016, Scientific Reports.
[5] C. dePamphilis,et al. Mechanistic model of evolutionary rate variation en route to a nonphotosynthetic lifestyle in plants , 2016, Proceedings of the National Academy of Sciences.
[6] Sudhir Kumar,et al. MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets. , 2016, Molecular biology and evolution.
[7] M. Logacheva,et al. Complete Plastid Genome of the Recent Holoparasite Lathraea squamaria Reveals Earliest Stages of Plastome Reduction in Orobanchaceae , 2016, PloS one.
[8] Jeffrey P. Mower,et al. Evolutionary dynamics of the plastid inverted repeat: the effects of expansion, contraction, and loss on substitution rates. , 2016, The New phytologist.
[9] Sarah T. Wagner,et al. Detecting and Characterizing the Highly Divergent Plastid Genome of the Nonphotosynthetic Parasitic Plant Hydnora visseri (Hydnoraceae) , 2016, Genome biology and evolution.
[10] Susanne S. Renner,et al. The Plastomes of Two Species in the Endoparasite Genus Pilostyles (Apodanthaceae) Each Retain Just Five or Six Possibly Functional Genes , 2015, Genome biology and evolution.
[11] Robert K. Jansen,et al. Mimosoid legume plastome evolution: IR expansion, tandem repeat expansions, and accelerated rate of evolution in clpP , 2015, Scientific Reports.
[12] Filipa L. Sousa,et al. YCF1: A Green TIC? , 2015, Plant Cell.
[13] S. Downie,et al. A Comparative Analysis of Whole Plastid Genomes from the Apiales: Expansion and Contraction of the Inverted Repeat, Mitochondrial to Plastid Transfer of DNA, and Identification of Highly Divergent Noncoding Regions , 2015 .
[14] Timothy B Sackton,et al. Investigating the path of plastid genome degradation in an early-transitional clade of heterotrophic orchids, and implications for heterotrophic angiosperms. , 2014, Molecular biology and evolution.
[15] Justin N. Vaughn,et al. Whole Plastome Sequences from Five Ginger Species Facilitate Marker Development and Define Limits to Barcode Methodology , 2014, PloS one.
[16] Jeffrey P. Mower,et al. Predominant and Substoichiometric Isomers of the Plastid Genome Coexist within Juniperus Plants and Have Shifted Multiple Times during Cupressophyte Evolution , 2014, Genome biology and evolution.
[17] Rachel S. Meyer,et al. Possible Loss of the Chloroplast Genome in the Parasitic Flowering Plant Rafflesia lagascae (Rafflesiaceae) , 2014, Molecular biology and evolution.
[18] Koichiro Tamura,et al. MEGA6: Molecular Evolutionary Genetics Analysis version 6.0. , 2013, Molecular biology and evolution.
[19] C. Neinhuis,et al. Single-Copy Nuclear Genes Place Haustorial Hydnoraceae within Piperales and Reveal a Cretaceous Origin of Multiple Parasitic Angiosperm Lineages , 2013, PloS one.
[20] Yan Zhang,et al. Mechanisms of Functional and Physical Genome Reduction in Photosynthetic and Nonphotosynthetic Parasitic Plants of the Broomrape Family[W][OPEN] , 2013, Plant Cell.
[21] S. Mathews,et al. Phylogeny and origins of holoparasitism in Orobanchaceae. , 2013, American journal of botany.
[22] Shane S. Sturrock,et al. Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data , 2012, Bioinform..
[23] J. Bennetzen,et al. Genomic Characterization for Parasitic Weeds of the Genus Striga by Sample Sequence Analysis , 2012 .
[24] Kai F. Müller,et al. The evolution of the plastid chromosome in land plants: gene content, gene order, gene function , 2011, Plant Molecular Biology.
[25] J. B. Davidson,et al. The evolution of chloroplast genes and genomes in ferns , 2011, Plant Molecular Biology.
[26] S. H. Wani,et al. Plant Plastid Engineering , 2010, Current genomics.
[27] Aaron M. Duffy,et al. The evolution of chloroplast genome structure in ferns. , 2010, Genome.
[28] Bartolomé Sabater,et al. Plastid ndh genes in plant evolution. , 2010, Plant physiology and biochemistry : PPB.
[29] Claude W dePamphilis,et al. The evolution of parasitism in plants. , 2010, Trends in plant science.
[30] P. Keeling. The endosymbiotic origin, diversification and fate of plastids , 2010, Philosophical Transactions of the Royal Society B: Biological Sciences.
[31] H. Daniell,et al. Complete chloroplast genome of Oncidium Gower Ramsey and evaluation of molecular markers for identification and breeding in Oncidiinae , 2010, BMC Plant Biology.
[32] Aaron M. Duffy,et al. Chloroplast genome sequence of the moss Tortula ruralis: gene content, polymorphism, and structural arrangement relative to other green plant chloroplast genomes , 2010, BMC Genomics.
[33] R. Jansen,et al. Implications of the Plastid Genome Sequence of Typha (Typhaceae, Poales) for Understanding Genome Evolution in Poaceae , 2010, Journal of Molecular Evolution.
[34] B. Lang,et al. Whirly proteins maintain plastid genome stability in Arabidopsis , 2009, Proceedings of the National Academy of Sciences.
[35] Ching-Ping Lin,et al. Evolution of reduced and compact chloroplast genomes (cpDNAs) in gnetophytes: selection toward a lower-cost strategy. , 2009, Molecular phylogenetics and evolution.
[36] H. Funk,et al. Functional characterization of the thylakoid Ndh complex phosphorylation by site-directed mutations in the ndhF gene. , 2009, Biochimica et biophysica acta.
[37] Felix Grewe,et al. A trans-splicing group I intron and tRNA-hyperediting in the mitochondrial genome of the lycophyte Isoetes engelmannii , 2009, Nucleic acids research.
[38] A. Phongdara,et al. Cloning and expression of a plastid-encoded subunit, beta-carboxyltransferase gene (accD) and a nuclear-encoded subunit, biotin carboxylase of acetyl-CoA carboxylase from oil palm (Elaeis guineensis Jacq.) , 2008 .
[39] K. Krause. From chloroplasts to “cryptic” plastids: evolution of plastid genomes in parasitic plants , 2008, Current Genetics.
[40] C. dePamphilis,et al. Functional gene losses occur with minimal size reduction in the plastid genome of the parasitic liverwort Aneura mirabilis. , 2008, Molecular biology and evolution.
[41] Linda A. Raubeson,et al. The complete plastid genome sequence of Welwitschia mirabilis: an unusually compact plastome with accelerated divergence rates , 2008, BMC Evolutionary Biology.
[42] S. Chaw,et al. Dynamics and evolution of the inverted repeat-large single copy junctions in the chloroplast genomes of monocots , 2008, BMC Evolutionary Biology.
[43] C. dePamphilis,et al. Systematics and plastid genome evolution of the cryptically photosynthetic parasitic plant genus Cuscuta (Convolvulaceae) , 2007, BMC Biology.
[44] James Leebens-Mack,et al. Analysis of 81 genes from 64 plastid genomes resolves relationships in angiosperms and identifies genome-scale evolutionary patterns , 2007, Proceedings of the National Academy of Sciences.
[45] Rodrigo Lopez,et al. Clustal W and Clustal X version 2.0 , 2007, Bioinform..
[46] J. Boore,et al. Bmc Plant Biology , 2007 .
[47] Uwe G Maier,et al. Complete DNA sequences of the plastid genomes of two parasitic flowering plant species, Cuscuta reflexa and Cuscuta gronovii , 2007, BMC Plant Biology.
[48] R. Bock. Structure, function, and inheritance of plastid genomes , 2007 .
[49] S. Mathews,et al. Phylogeny of the parasitic plant family Orobanchaceae inferred from phytochrome A. , 2006, American journal of botany.
[50] J. Tomkins,et al. Complete chloroplast genome sequences of Solanum bulbocastanum, Solanum lycopersicum and comparative analyses with other Solanaceae genomes , 2006, Theoretical and Applied Genetics.
[51] Chung-Yen Lin,et al. The chloroplast genome of Phalaenopsis aphrodite (Orchidaceae): comparative analysis of evolutionary rate with that of grasses and its phylogenetic implications. , 2006, Molecular biology and evolution.
[52] Jeffrey P. Mower,et al. The complete chloroplast genome sequence of Pelargonium x hortorum: organization and evolution of the largest and most highly rearranged chloroplast genome of land plants. , 2006, Molecular biology and evolution.
[53] Alexander Richter,et al. ChloroplastDB: the Chloroplast Genome Database , 2005, Nucleic Acids Res..
[54] K. H. Wolfe,et al. Ebb and flow of the chloroplast inverted repeat , 1996, Molecular and General Genetics MGG.
[55] Robert K. Jansen,et al. Chloroplast genomes of plants. , 2005 .
[56] Robert J Henry,et al. Plant Diversity and Evolution: Genotypic and Phenotypic Variation in Higher Plants , 2004 .
[57] G. McFadden,et al. Evolution: Red Algal Genome Affirms a Common Origin of All Plastids , 2004, Current Biology.
[58] F. Blattner,et al. Mauve: multiple alignment of conserved genomic sequence with rearrangements. , 2004, Genome research.
[59] B. Bremer,et al. Molecular phylogenetic dating of asterid flowering plants shows early Cretaceous diversification. , 2004, Systematic biology.
[60] J. Palmer,et al. The chloroplast genome arrangement ofLobelia thuliniana (Lobeliaceae): Expansion of the inverted repeat in an ancestor of theCampanulales , 1999, Plant Systematics and Evolution.
[61] C. dePamphilis,et al. Do nonasterid holoparasitic flowering plants have plastid genomes? , 1997, Plant Molecular Biology.
[62] J. Palmer,et al. Structure and evolution of the largest chloroplast gene (ORF2280): internal plasticity and multiple gene loss during angiosperm evolution , 1994, Current Genetics.
[63] M. Sugiura,et al. Chloroplast DNA of black pine retains a residual inverted repeat lacking rRNA genes: nucleotide sequences of trnQ, trnK, psbA, trnI and trnH and the absence of rps16 , 1992, Molecular and General Genetics MGG.
[64] John P. Huelsenbeck,et al. MrBayes 3: Bayesian phylogenetic inference under mixed models , 2003, Bioinform..
[65] Sabine Cornelsen,et al. Evolutionary analysis of Arabidopsis, cyanobacterial, and chloroplast genomes reveals plastid phylogeny and thousands of cyanobacterial genes in the nucleus , 2002, Proceedings of the National Academy of Sciences of the United States of America.
[66] K. H. Wolfe,et al. Nucleotide Substitution Rates in Legume Chloroplast DNA Depend on the Presence of the Inverted Repeat , 2002, Journal of Molecular Evolution.
[67] C. dePamphilis,et al. Disintegration of the scrophulariaceae. , 2001, American journal of botany.
[68] J. Palmer. Molecular evolution: A single birth of all plastids? , 2000, Nature.
[69] J. Zapata,et al. Chlororespiration and Poising of Cyclic Electron Transport , 2000, The Journal of Biological Chemistry.
[70] S. Downie,et al. Expansion and Contraction of the Chloroplast Inverted Repeat in Apiaceae Subfamily Apioideae , 2000 .
[71] Kasten,et al. Technical Advance: Stable chloroplast transformation in potato: use of green fluorescent protein as a plastid marker. , 1999, The Plant journal : for cell and molecular biology.
[72] P. Delavault,et al. Organization of the reduced plastid genome of Lathraea clandestina, an achlorophyllous parasitic plant. , 1996 .
[73] T. Friedrich,et al. The proton‐pumping respiratory complex I of bacteria and mitochondria and its homologue in chloroplasts , 1995, FEBS letters.
[74] J. Palmer,et al. Function and evolution of a minimal plastid genome from a nonphotosynthetic parasitic plant. , 1992, Proceedings of the National Academy of Sciences of the United States of America.
[75] J. Palmer,et al. Restriction site mapping of the chloroplast DNA inverted repeat : A molecular phylogeny of the Asteridae , 1992 .
[76] M. Sugiura,et al. The chloroplast genome. , 1992, Plant molecular biology.
[77] J. Palmer,et al. CHAPTER 2 – Plastid Chromosomes: Structure and Evolution , 1991 .
[78] J. Palmer,et al. Loss of photosynthetic and chlororespiratory genes from the plastid genome of a parasitic flowering plant , 1990, Nature.
[79] P. Maliga,et al. Stable transformation of plastids in higher plants. , 1990, Proceedings of the National Academy of Sciences of the United States of America.
[80] Wen-Hsiung Li,et al. Rates of nucleotide substitution vary greatly among plant mitochondrial, chloroplast, and nuclear DNAs. , 1987, Proceedings of the National Academy of Sciences of the United States of America.
[81] Jeffrey D. Palmer,et al. Chloroplast DNA Evolution and Biosystematic Uses of Chloroplast DNA Variation , 1987, The American Naturalist.
[82] J. Palmer,et al. Comparative organization of chloroplast genomes. , 1985, Annual review of genetics.
[83] E. Pahlich,et al. A rapid DNA isolation procedure for small quantities of fresh leaf tissue , 1980 .
[84] R. Kolodner,et al. Inverted repeats in chloroplast DNA from higher plants. , 1979, Proceedings of the National Academy of Sciences of the United States of America.