Taverna: a tool for building and running workflows of services

Taverna is an application that eases the use and integration of the growing number of molecular biology tools and databases available on the web, especially web services. It allows bioinformaticians to construct workflows or pipelines of services to perform a range of different analyses, such as sequence analysis and genome annotation. These high-level workflows can integrate many different resources into a single analysis. Taverna is available freely under the terms of the GNU Lesser General Public License (LGPL) from .

[1]  Matthew R. Pocock,et al.  Taverna: a tool for the composition and enactment of bioinformatics workflows , 2004, Bioinform..

[2]  Heiko Schoof,et al.  BioMOBY Successfully Integrates Distributed Heterogeneous Bioinformatics Web Services. The PlaNet Exemplar Case1 , 2005, Plant Physiology.

[3]  Sean Martin,et al.  Globally distributed object identification for biological knowledgebases , 2004, Briefings Bioinform..

[4]  Phillip Lord,et al.  Describing Web Services for User-Oriented Retrieval , 2005 .

[5]  Gustavo Alonso,et al.  Web Services: Concepts, Architectures and Applications , 2009 .

[6]  S. Karlin,et al.  Prediction of complete gene structures in human genomic DNA. , 1997, Journal of molecular biology.

[7]  Zhiping Weng,et al.  SeqVISTA: a new module of integrated computational tools for studying transcriptional regulation , 2004, Nucleic Acids Res..

[8]  Robert Stevens,et al.  Treating Shimantic Web Syndrome with Ontologies , 2004 .

[9]  Kengo Kinoshita,et al.  eF-site and PDBjViewer: database and viewer for protein functional sites , 2004, Bioinform..

[10]  Robert D. Finn,et al.  Pfam: clans, web tools and services , 2005, Nucleic Acids Res..

[11]  L. Stein Creating a bioinformatics nation , 2002, Nature.

[12]  Edward A. Lee,et al.  CONCURRENCY AND COMPUTATION: PRACTICE AND EXPERIENCE Concurrency Computat.: Pract. Exper. 2000; 00:1–7 Prepared using cpeauth.cls [Version: 2002/09/19 v2.02] Taverna: Lessons in creating , 2022 .

[13]  Robert Stevens,et al.  Association of variations in I kappa B-epsilon with Graves’ disease using classical and myGrid methodologies , 2004 .

[14]  Bruno W. S. Sobral,et al.  A Life Scientist's Gateway to Distributed Data Management and Computing: The PathPort/ToolBus Framework , 2003, OMICS.

[15]  Kiyoko F. Aoki-Kinoshita,et al.  From genomics to chemical genomics: new developments in KEGG , 2005, Nucleic Acids Res..

[16]  Douglas B. Kell,et al.  maxdLoad2 and maxdBrowse: standards-compliant tools for microarray experimental annotation, data management and dissemination , 2005, BMC Bioinformatics.

[17]  Bart De Moor,et al.  BioMart and Bioconductor: a powerful link between biological databases and microarray data analysis , 2005, Bioinform..

[18]  Carole A. Goble,et al.  Panoply of utilities in Taverna , 2005, First International Conference on e-Science and Grid Computing (e-Science'05).

[19]  Sameer Velankar,et al.  SOAP-based services provided by the European Bioinformatics Institute , 2005, Nucleic Acids Res..

[20]  Ross Ihaka,et al.  Gentleman R: R: A language for data analysis and graphics , 1996 .

[21]  Ian M. Donaldson,et al.  BIND: the Biomolecular Interaction Network Database , 2001, Nucleic Acids Res..

[22]  Hideaki Sugawara,et al.  DBJ in the stream of various biological data , 2004, Nucleic Acids Res..

[23]  Carole A. Goble,et al.  Exploring Williams-Beuren syndrome using myGrid , 2004, ISMB/ECCB.