Regulation of zebrafish dorsoventral patterning by phase separation of RNA-binding protein Rbm14
暂无分享,去创建一个
Yixian Zheng | N. Jing | Xueliang Zhu | Yihan Wan | Yue Xiao | Jiehui Chen | Qi Gao
[1] Katherine W. Rogers,et al. Nodal and BMP dispersal during early zebrafish development. , 2019, Developmental biology.
[2] M. Levin,et al. Dysfunctional RNA binding proteins and stress granules in multiple sclerosis , 2018, Journal of Neuroimmunology.
[3] R. Pappu,et al. A Molecular Grammar Governing the Driving Forces for Phase Separation of Prion-like RNA Binding Proteins , 2018, Cell.
[4] C. Bond,et al. Functional Domains of NEAT1 Architectural lncRNA Induce Paraspeckle Assembly through Phase Separation. , 2018, Molecular cell.
[5] U. Stochaj,et al. Cytoplasmic RNA Granules in Somatic Maintenance , 2018, Gerontology.
[6] Nicolas L. Fawzi,et al. Mechanistic View of hnRNPA2 Low-Complexity Domain Structure, Interactions, and Phase Separation Altered by Mutation and Arginine Methylation. , 2018, Molecular cell.
[7] Yang Luo,et al. P-Bodies: Composition, Properties, and Functions , 2018, Biochemistry.
[8] R. Parker,et al. The Stress Granule Transcriptome Reveals Principles of mRNA Accumulation in Stress Granules. , 2017, Molecular cell.
[9] J. Eeckhoute,et al. The RBM14/CoAA-interacting, long intergenic non-coding RNA Paral1 regulates adipogenesis and coactivates the nuclear receptor PPARγ , 2017, Scientific Reports.
[10] C. Brangwynne,et al. Liquid phase condensation in cell physiology and disease , 2017, Science.
[11] Josh Lawrimore,et al. Enrichment of dynamic chromosomal crosslinks drive phase separation of the nucleolus , 2017, Nucleic acids research.
[12] Xing Chang,et al. Cytoplasmic poly(A)-binding protein 1 (PABPC1) interacts with the RNA-binding protein hnRNPLL and thereby regulates immunoglobulin secretion in plasma cells , 2017, The Journal of Biological Chemistry.
[13] Vladimir N Uversky,et al. Intrinsically disordered proteins in overcrowded milieu: Membrane-less organelles, phase separation, and intrinsic disorder. , 2017, Current opinion in structural biology.
[14] Jeffrey J. Nirschl,et al. Amyotrophic lateral sclerosis-linked mutations increase the viscosity of liquid-like TDP-43 RNP granules in neurons , 2017, Proceedings of the National Academy of Sciences.
[15] Anthony A. Hyman,et al. Biomolecular condensates: organizers of cellular biochemistry , 2017, Nature Reviews Molecular Cell Biology.
[16] D. Ma,et al. Smad4 is required for the development of cardiac and skeletal muscle in zebrafish. , 2016, Differentiation; research in biological diversity.
[17] V. Korzh,et al. Quantitative imaging reveals real-time Pou5f3–Nanog complexes driving dorsoventral mesendoderm patterning in zebrafish , 2016, eLife.
[18] R. Kingston,et al. Structural, super-resolution microscopy analysis of paraspeckle nuclear body organization , 2016, The Journal of cell biology.
[19] R. Parker,et al. Principles and Properties of Stress Granules. , 2016, Trends in cell biology.
[20] R. Huganir,et al. Phase Transition in Postsynaptic Densities Underlies Formation of Synaptic Complexes and Synaptic Plasticity , 2016, Cell.
[21] Z. Gong,et al. Genome-wide identification of suitable zebrafish Danio rerio reference genes for normalization of gene expression data by RT-qPCR. , 2016, Journal of fish biology.
[22] V. Timmerman,et al. The hnRNP family: insights into their role in health and disease , 2016, Human Genetics.
[23] Stephen W. Michnick,et al. Mechanisms and Consequences of Macromolecular Phase Separation , 2016, Cell.
[24] Ding Ye,et al. Knockdown of zebrafish Nanog increases primordial germ cells during early embryonic development , 2016, Development, growth & differentiation.
[25] F. Marlow,et al. Split top: a maternal cathepsin B that regulates dorsoventral patterning and morphogenesis , 2016, Development.
[26] Anthony Barsic,et al. ATPase-Modulated Stress Granules Contain a Diverse Proteome and Substructure , 2016, Cell.
[27] Claire H. Michel,et al. ALS/FTD Mutation-Induced Phase Transition of FUS Liquid Droplets and Reversible Hydrogels into Irreversible Hydrogels Impairs RNP Granule Function , 2015, Neuron.
[28] Nicolas L. Fawzi,et al. Residue-by-Residue View of In Vitro FUS Granules that Bind the C-Terminal Domain of RNA Polymerase II. , 2015, Molecular cell.
[29] A. Kanagaraj,et al. Phase Separation by Low Complexity Domains Promotes Stress Granule Assembly and Drives Pathological Fibrillization , 2015, Cell.
[30] Yuejia Huang,et al. Phase Transition of Spindle-Associated Protein Regulate Spindle Apparatus Assembly , 2015, Cell.
[31] C. Bond,et al. Prion-like domains in RNA binding proteins are essential for building subnuclear paraspeckles , 2015, The Journal of cell biology.
[32] V. Medina,et al. Histamine H4 receptor: insights into a potential therapeutic target in breast cancer. , 2015, Frontiers in bioscience.
[33] C. Brangwynne,et al. The disordered P granule protein LAF-1 drives phase separation into droplets with tunable viscosity and dynamics , 2015, Proceedings of the National Academy of Sciences.
[34] Xiaobin Zheng,et al. Splicing function of mitotic regulators links R-loop–mediated DNA damage to tumor cell killing , 2015, The Journal of cell biology.
[35] L. Maquat,et al. CARMing down the SINEs of anarchy: two paths to freedom from paraspeckle detention , 2015, Genes & development.
[36] Ye Xu,et al. Protein arginine methyltransferase CARM1 attenuates the paraspeckle-mediated nuclear retention of mRNAs containing IRAlus , 2015, Genes & development.
[37] Steven L Salzberg,et al. HISAT: a fast spliced aligner with low memory requirements , 2015, Nature Methods.
[38] Timothy D. Craggs,et al. Phase Transition of a Disordered Nuage Protein Generates Environmentally Responsive Membraneless Organelles , 2015, Molecular cell.
[39] A. Meng,et al. TGFβ1a regulates zebrafish posterior lateral line formation via Smad5 mediated pathway. , 2015, Journal of molecular cell biology.
[40] Lan Lin,et al. rMATS: Robust and flexible detection of differential alternative splicing from replicate RNA-Seq data , 2014, Proceedings of the National Academy of Sciences.
[41] Jing Chen,et al. Self-assembled FUS binds active chromatin and regulates gene transcription , 2014, Proceedings of the National Academy of Sciences.
[42] A. Hyman,et al. Liquid-liquid phase separation in biology. , 2014, Annual review of cell and developmental biology.
[43] Alex Lancaster,et al. PLAAC: a web and command-line application to identify proteins with prion-like amino acid composition , 2014, Bioinform..
[44] Paul Theodor Pyl,et al. HTSeq—a Python framework to work with high-throughput sequencing data , 2014, bioRxiv.
[45] Zuo-yan Zhu,et al. Transcriptional factors smad1 and smad9 act redundantly to mediate zebrafish ventral specification downstream of smad5. , 2014, The Journal of biological chemistry.
[46] Yuhua Sun,et al. Extraembryonic signals under the control of MGA, Max, and Smad4 are required for dorsoventral patterning. , 2014, Developmental cell.
[47] S. McKnight,et al. Phosphorylation-Regulated Binding of RNA Polymerase II to Fibrous Polymers of Low-Complexity Domains , 2013, Cell.
[48] C. Hill,et al. The ventral to dorsal BMP activity gradient in the early zebrafish embryo is determined by graded expression of BMP ligands , 2013, Developmental biology.
[49] Oliver D. King,et al. Stress granules as crucibles of ALS pathogenesis , 2013, The Journal of cell biology.
[50] Lukasz A. Kurgan,et al. D2P2: database of disordered protein predictions , 2012, Nucleic Acids Res..
[51] N. Goshima,et al. Alternative 3′‐end processing of long noncoding RNA initiates construction of nuclear paraspeckles , 2012, The EMBO journal.
[52] Oliver D. King,et al. The tip of the iceberg: RNA-binding proteins with prion-like domains in neurodegenerative disease , 2012, Brain Research.
[53] Xiumin Yan,et al. miR-129-3p controls cilia assembly by regulating CP110 and actin dynamics , 2012, Nature Cell Biology.
[54] Jimin Pei,et al. Cell-free Formation of RNA Granules: Low Complexity Sequence Domains Form Dynamic Fibers within Hydrogels , 2012, Cell.
[55] D. Morello,et al. RNA-binding proteins, RNA granules, and gametes: is unity strength? , 2011, Reproduction.
[56] Zongbin Cui,et al. Lzts2 Regulates Embryonic Cell Movements and Dorsoventral Patterning through Interaction with and Export of Nuclear β-Catenin in Zebrafish* , 2011, The Journal of Biological Chemistry.
[57] Matthew D. Young,et al. Gene ontology analysis for RNA-seq: accounting for selection bias , 2010, Genome Biology.
[58] Luke H. Hoeppner,et al. Co‐activator activator (CoAA) prevents the transcriptional activity of Runt domain transcription factors , 2009, Journal of cellular biochemistry.
[59] C. Hong,et al. Applications of small molecule BMP inhibitors in physiology and disease. , 2009, Cytokine & growth factor reviews.
[60] P. Anderson,et al. RNA granules: post-transcriptional and epigenetic modulators of gene expression , 2009, Nature Reviews Molecular Cell Biology.
[61] L. Tora,et al. Human U1 snRNA forms a new chromatin-associated snRNP with TAF15 , 2009, EMBO reports.
[62] J. Yates,et al. A Requirement of Nudel and Dynein for Assembly of the Lamin B Spindle Matrix , 2009, Nature Cell Biology.
[63] A. Ståhlberg,et al. The multifunctional FUS, EWS and TAF15 proto-oncoproteins show cell type-specific expression patterns and involvement in cell spreading and stress response , 2008, BMC Cell Biology.
[64] A. Phillips,et al. Switched alternative splicing of oncogene CoAA during embryonal carcinoma stem cell differentiation , 2007, Nucleic acids research.
[65] B. Blencowe. Alternative Splicing: New Insights from Global Analyses , 2006, Cell.
[66] H. Spring,et al. Identification of the junctional plaque protein plakophilin 3 in cytoplasmic particles containing RNA-binding proteins and the recruitment of plakophilins 1 and 3 to stress granules. , 2005, Molecular biology of the cell.
[67] Y. Mishina,et al. BMP signaling and early embryonic patterning. , 2005, Cytokine & growth factor reviews.
[68] J. G. Patton,et al. Dynamic sorting of nuclear components into distinct nucleolar caps during transcriptional inhibition. , 2005, Molecular biology of the cell.
[69] B. O’Malley,et al. CoAA, a Nuclear Receptor Coactivator Protein at the Interface of Transcriptional Coactivation and RNA Splicing , 2004, Molecular and Cellular Biology.
[70] J. Nichols,et al. BMP Induction of Id Proteins Suppresses Differentiation and Sustains Embryonic Stem Cell Self-Renewal in Collaboration with STAT3 , 2003, Cell.
[71] W. Talbot,et al. Maternally supplied Smad5 is required for ventral specification in zebrafish embryos prior to zygotic Bmp signaling. , 2002, Developmental biology.
[72] Bert W O'Malley,et al. Coordinate Regulation of Transcription and Splicing by Steroid Receptor Coregulators , 2002, Science.
[73] K. Miyazono,et al. Id: A Target of BMP Signaling , 2002, Science's STKE.
[74] A. Harvey,et al. REDOX regulation of early embryo development. , 2002, Reproduction.
[75] W. Chin,et al. Identification and Characterization of RRM-containing Coactivator Activator (CoAA) as TRBP-interacting Protein, and Its Splice Variant as a Coactivator Modulator (CoAM)* , 2001, The Journal of Biological Chemistry.
[76] M. Mullins,et al. Lost-a-fin encodes a type I BMP receptor, Alk8, acting maternally and zygotically in dorsoventral pattern formation. , 2001, Development.
[77] F. Müller,et al. Characterization of zebrafish smad1, smad2 and smad5: the amino-terminus of Smad1 and Smad5 is required for specific function in the embryo , 1999, Mechanisms of Development.
[78] D. Immanuel,et al. A topogenic role for the oncogenic N-terminus of TLS: nucleolar localization when transcription is inhibited , 1997, Oncogene.
[79] C. Kimmel,et al. Stages of embryonic development of the zebrafish , 1995, Developmental dynamics : an official publication of the American Association of Anatomists.
[80] J. Postlethwait,et al. Goosecoid expression in neurectoderm and mesendoderm is disrupted in zebrafish cyclops gastrulas. , 1994, Developmental biology.
[81] E M De Robertis,et al. Expression of zebrafish goosecoid and no tail gene products in wild-type and mutant no tail embryos. , 1994, Development.
[82] J. Joly,et al. The ventral and posterior expression of the zebrafish homeobox gene eve1 is perturbed in dorsalized and mutant embryos. , 1993, Development.
[83] T. Hirose,et al. The building process of the functional paraspeckle with long non-coding RNAs. , 2015, Frontiers in bioscience.
[84] Brad T. Sherman,et al. Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources , 2008, Nature Protocols.
[85] Wei Li,et al. Evidence that ternary complex (eIF2-GTP-tRNA(i)(Met))-deficient preinitiation complexes are core constituents of mammalian stress granules. , 2002, Molecular biology of the cell.
[86] R. Laskey,et al. Nuclear targeting sequences--a consensus? , 1991, Trends in biochemical sciences.