The 2.2‐Angstrom resolution crystal structure of the carboxy‐terminal region of ataxin‐3

An expansion of polyglutamine (polyQ) sequence in ataxin‐3 protein causes spinocerebellar ataxia type 3, an inherited neurodegenerative disorder. The crystal structure of the polyQ‐containing carboxy‐terminal fragment of human ataxin‐3 was solved at 2.2‐Å resolution. The Atxn3 carboxy‐terminal fragment including 14 glutamine residues adopts both random coil and α‐helical conformations in the crystal structure. The polyQ sequence in α‐helical structure is stabilized by intrahelical hydrogen bonds mediated by glutamine side chains. The intrahelical hydrogen‐bond interactions between glutamine side chains along the axis of the polyQ α‐helix stabilize the secondary structure. Analysis of this structure furthers our understanding of the polyQ‐structural characteristics that likely underlie the pathogenesis of polyQ‐expansion disorders.

[1]  I. A. Abreu,et al.  Trinucleotide Repeats: A Structural Perspective , 2013, Front. Neurol..

[2]  Christopher A Ross,et al.  Polyglutamine Pathogenesis Emergence of Unifying Mechanisms for Huntington's Disease and Related Disorders , 2002, Neuron.

[3]  Charlotte M. Deane,et al.  JOY: protein sequence-structure representation and analysis , 1998, Bioinform..

[4]  M. Savontaus,et al.  The occurrence of dominant spinocerebellar ataxias among 251 Finnish ataxia patients and the role of predisposing large normal alleles in a genetically isolated population , 2005, Acta neurologica Scandinavica.

[5]  A. West,et al.  The structure of a polyQ–anti-polyQ complex reveals binding according to a linear lattice model , 2007, Nature Structural &Molecular Biology.

[6]  Dalaver H. Anjum,et al.  Polyglutamine disruption of the huntingtin exon1 N-terminus triggers a complex aggregation mechanism , 2009, Nature Structural &Molecular Biology.

[7]  R. Atwal,et al.  Live cell imaging and biophotonic methods reveal two types of mutant huntingtin inclusions. , 2014, Human molecular genetics.

[8]  P. Loll,et al.  Crystal Structure of a Josephin-Ubiquitin Complex , 2010, The Journal of Biological Chemistry.

[9]  E. Stellwagen,et al.  Residue helix parameters obtained from dichroic analysis of peptides of defined sequence. , 1993, Biochemistry.

[10]  Meewhi Kim Pathogenic polyglutamine expansion length correlates with polarity of the flanking sequences , 2014, Molecular Neurodegeneration.

[11]  Randy J. Read,et al.  Acta Crystallographica Section D Biological , 2003 .

[12]  E. Kandel,et al.  Essential Role of Coiled Coils for Aggregation and Activity of Q/N-Rich Prions and PolyQ Proteins , 2010, Cell.

[13]  Zbyszek Otwinowski,et al.  Secondary structure of Huntingtin amino-terminal region. , 2009, Structure.

[14]  N. Pannu,et al.  REFMAC5 for the refinement of macromolecular crystal structures , 2011, Acta crystallographica. Section D, Biological crystallography.

[15]  Y. Urade,et al.  A toxic monomeric conformer of the polyglutamine protein , 2007, Nature Structural &Molecular Biology.

[16]  Meewhi Kim,et al.  Beta conformation of polyglutamine track revealed by a crystal structure of Huntingtin N-terminal region with insertion of three histidine residues , 2013, Prion.

[17]  R. Atwal,et al.  Huntingtin has a membrane association signal that can modulate huntingtin aggregation, nuclear entry and toxicity. , 2007, Human molecular genetics.

[18]  H. Zoghbi,et al.  Glutamine repeats and neurodegeneration. , 2000, Annual review of neuroscience.

[19]  H. Minakata,et al.  Poly-L-glutamine forms cation channels: relevance to the pathogenesis of the polyglutamine diseases. , 2000, Biophysical journal.

[20]  A. Soper,et al.  The hydrogen-bonding ability of the amino acid glutamine revealed by neutron diffraction experiments. , 2012, The journal of physical chemistry. B.

[21]  Z. Otwinowski,et al.  Processing of X-ray diffraction data collected in oscillation mode. , 1997, Methods in enzymology.

[22]  A. Doig,et al.  Hydrogen bonding interactions between glutamine and asparagine in alpha-helical peptides. , 1997, Journal of molecular biology.

[23]  C. Pace,et al.  A helix propensity scale based on experimental studies of peptides and proteins. , 1998, Biophysical journal.

[24]  Richard H. Lathrop,et al.  Modeling Protein Homopolymeric Repeats: Possible Polyglutamine Structural Motifs for Huntington's Disease , 1998, ISMB.

[25]  Ronald Wetzel,et al.  Oligoproline effects on polyglutamine conformation and aggregation. , 2006, Journal of molecular biology.

[26]  Feng Ding,et al.  Polyglutamine Induced Misfolding of Huntingtin Exon1 is Modulated by the Flanking Sequences , 2010, PLoS Comput. Biol..

[27]  Vincent B. Chen,et al.  Correspondence e-mail: , 2000 .

[28]  H. Paulson,et al.  Toward understanding Machado–Joseph disease , 2012, Progress in Neurobiology.

[29]  K. Henrick,et al.  Inference of macromolecular assemblies from crystalline state. , 2007, Journal of molecular biology.

[30]  H. Monoi New tubular single-stranded helix of poly-L-amino acids suggested by molecular mechanics calculations: I. Homopolypeptides in isolated environments. , 1995, Biophysical journal.

[31]  Andreas Vitalis,et al.  Characterizing the conformational ensemble of monomeric polyglutamine , 2005, Proteins.

[32]  Carri-Lyn R. Mead,et al.  CAG-encoded polyglutamine length polymorphism in the human genome , 2007, BMC Genomics.

[33]  Ronald Wetzel,et al.  Polyglutamine aggregation nucleation: Thermodynamics of a highly unfavorable protein folding reaction , 2005, Proceedings of the National Academy of Sciences of the United States of America.

[34]  Giuseppe Nicastro,et al.  The solution structure of the Josephin domain of ataxin-3: structural determinants for molecular recognition. , 2005, Proceedings of the National Academy of Sciences of the United States of America.

[35]  A. Andrés,et al.  Dynamics of CAG repeat loci revealed by the analysis of their variability , 2003, Human mutation.

[36]  P. Emsley,et al.  Features and development of Coot , 2010, Acta crystallographica. Section D, Biological crystallography.

[37]  Anne Bertolotti,et al.  Critical Role of the Proline-rich Region in Huntingtin for Aggregation and Cytotoxicity in Yeast* , 2006, Journal of Biological Chemistry.

[38]  Gert Vriend,et al.  A series of PDB related databases for everyday needs , 2010, Nucleic Acids Res..

[39]  M. Perutz,et al.  Glutamine Repeats as Polar Zippers: Their Role in Inherited Neurodegenerative Disease , 1995, Molecular medicine.

[40]  Annalisa Pastore,et al.  Solution structure of polyglutamine tracts in GST‐polyglutamine fusion proteins , 2002, FEBS letters.

[41]  The Effects of Regularly Spaced Glutamine Substitutions on Alpha-Helical Peptide Structures. A DFT/ONIOM Study. , 2011, Chemical physics letters.

[42]  R. Fairman,et al.  Role of the coiled-coil structural motif in polyglutamine aggregation. , 2014, Biochemistry.

[43]  J. Mandel,et al.  Linear and extended: a common polyglutamine conformation recognized by the three antibodies MW1, 1C2 and 3B5H10. , 2013, Human molecular genetics.

[44]  Xue Gao,et al.  Structural Transformation of the Tandem Ubiquitin-Interacting Motifs in Ataxin-3 and Their Cooperative Interactions with Ubiquitin Chains , 2010, PloS one.

[45]  F. J. Monje,et al.  Association of polyalanine and polyglutamine coiled coils mediates expansion disease-related protein aggregation and dysfunction , 2014, Human molecular genetics.

[46]  J. Taylor,et al.  Repeat expansion disease: progress and puzzles in disease pathogenesis , 2010, Nature Reviews Genetics.

[47]  I. Kanazawa,et al.  Polar amino acid-rich sequences bind to polyglutamine tracts. , 1998, Biochemical and biophysical research communications.

[48]  Martin H. Schaefer,et al.  Aggregation of polyQ-extended proteins is promoted by interaction with their natural coiled-coil partners , 2013, BioEssays : news and reviews in molecular, cellular and developmental biology.

[49]  Joanna Trylska,et al.  Secondary structures of native and pathogenic huntingtin N-terminal fragments. , 2011, The journal of physical chemistry. B.

[50]  Wazim Mohammed Ismail,et al.  Preference of Amino Acids in Different Protein Structural Classes: A Database Analysis , 2010, 2010 4th International Conference on Bioinformatics and Biomedical Engineering.

[51]  I. Módy,et al.  N17 Modifies Mutant Huntingtin Nuclear Pathogenesis and Severity of Disease in HD BAC Transgenic Mice , 2015, Neuron.

[52]  Pier Paolo Di Fiore,et al.  Deubiquitinating function of ataxin-3: insights from the solution structure of the Josephin domain. , 2005, Proceedings of the National Academy of Sciences of the United States of America.

[53]  Randy J. Read,et al.  Phaser crystallographic software , 2007, Journal of applied crystallography.

[54]  R. Center,et al.  Crystallization of a trimeric human T cell leukemia virus type 1 gp21 ectodomain fragment as a chimera with maltose‐binding protein , 1998, Protein science : a publication of the Protein Society.

[55]  Zoya Ignatova,et al.  In-cell Aggregation of a Polyglutamine-containing Chimera Is a Multistep Process Initiated by the Flanking Sequence* , 2007, Journal of Biological Chemistry.

[56]  Yoshiki Yamaguchi,et al.  Mode of substrate recognition by the Josephin domain of ataxin‐3, which has an endo‐type deubiquitinase activity , 2014, FEBS letters.

[57]  D. Bates,et al.  Crystal structure of a conserved N-terminal domain of histone deacetylase 4 reveals functional insights into glutamine-rich domains , 2007, Proceedings of the National Academy of Sciences.

[58]  E. Altschuler,et al.  Random coil conformation for extended polyglutamine stretches in aqueous soluble monomeric peptides. , 2009, The journal of peptide research : official journal of the American Peptide Society.