Thermodynamic stability of hydrogen‐bonded systems in polar and nonpolar environments
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Daniel Tunega | Hans Lischka | Sylvio Canuto | Georg Haberhauer | Adélia J. A. Aquino | Kaline Coutinho | Martin H. Gerzabek | Hasan Pasalic | Herbert C. Georg | Tatiane F. Moraes | H. Lischka | A. Aquino | M. Gerzabek | H. C. Georg | S. Canuto | K. Coutinho | G. Haberhauer | D. Tunega | H. Pasalic | Tatiane F. Moraes
[1] Parr,et al. Development of the Colle-Salvetti correlation-energy formula into a functional of the electron density. , 1988, Physical review. B, Condensed matter.
[2] Ariel Fernández,et al. Dynamics of hydrogen bond desolvation in protein folding. , 2002, Journal of molecular biology.
[3] J. Ponder,et al. An efficient newton‐like method for molecular mechanics energy minimization of large molecules , 1987 .
[4] Daniel Tunega,et al. Solvent Effects on Hydrogen BondsA Theoretical Study , 2002 .
[5] T. Straatsma,et al. THE MISSING TERM IN EFFECTIVE PAIR POTENTIALS , 1987 .
[6] H. Senn,et al. QM/MM Methods for Biological Systems , 2006 .
[7] S. Nosé. A molecular dynamics method for simulations in the canonical ensemble , 1984 .
[8] C. Brooks. Computer simulation of liquids , 1989 .
[9] G. A. Jeffrey,et al. An Introduction to Hydrogen Bonding , 1997 .
[10] J. Hine,et al. Structural effects on rates and equilibriums. XIX. Intrinsic hydrophilic character of organic compounds. Correlations in terms of structural contributions , 1975 .
[11] H. Lischka,et al. The thermodynamic stability of hydrogen bonded and cation bridged complexes of humic acid models—A theoretical study , 2008 .
[12] Peter A. Kollman,et al. Calculation of the free energy of association of nucleic acid bases in vacuo and water solution , 1988 .
[13] F. Crick,et al. Molecular Structure of Nucleic Acids: A Structure for Deoxyribose Nucleic Acid , 1953, Nature.
[14] A. Schäfer,et al. Fully optimized contracted Gaussian basis sets of triple zeta valence quality for atoms Li to Kr , 1994 .
[15] Hans W. Horn,et al. ELECTRONIC STRUCTURE CALCULATIONS ON WORKSTATION COMPUTERS: THE PROGRAM SYSTEM TURBOMOLE , 1989 .
[16] Donald G. Truhlar,et al. Universal Quantum Mechanical Model for Solvation Free Energies Based on Gas-Phase Geometries , 1998 .
[17] David Beeman,et al. Some Multistep Methods for Use in Molecular Dynamics Calculations , 1976 .
[18] A. Klamt,et al. COSMO : a new approach to dielectric screening in solvents with explicit expressions for the screening energy and its gradient , 1993 .
[19] Peter A. Kollman,et al. FREE ENERGY CALCULATIONS : APPLICATIONS TO CHEMICAL AND BIOCHEMICAL PHENOMENA , 1993 .
[20] Irwin Oppenheim,et al. Statistical Mechanical Theory of Transport Processes. VII. The Coefficient of Thermal Conductivity of Monatomic Liquids , 1954 .
[21] W. Rocha,et al. Reaction mechanism and tautomeric equilibrium of 2-mercaptopyrimidine in the gas phase and in aqueous solution: a combined Monte Carlo and quantum mechanics study. , 2006, The journal of physical chemistry. A.
[22] Jacopo Tomasi,et al. Molecular Interactions in Solution: An Overview of Methods Based on Continuous Distributions of the Solvent , 1994 .
[23] J. Tomasi,et al. Electrostatic interaction of a solute with a continuum. A direct utilizaion of AB initio molecular potentials for the prevision of solvent effects , 1981 .
[24] F. J. Stevenson. HUmus Chemistry Genesis, Composition, Reactions , 1982 .
[25] J. Kirkwood. Statistical Mechanics of Fluid Mixtures , 1935 .
[26] N. Metropolis,et al. Equation of State Calculations by Fast Computing Machines , 1953, Resonance.
[27] H. C. Georg,et al. A look inside the cavity of hydrated α-cyclodextrin: A computer simulation study , 2005 .
[28] Kazunori Yamamoto,et al. Hydrophobic hydration and hydrophobic interaction of carboxylic acids in aqueous solution: mass spectrometric analysis of liquid fragments isolated as clusters , 1990 .
[29] R. Sheets,et al. Effect of surface adsorption on the determination by infrared spectroscopy of hydrogen bond energies in carboxylic acid dimers , 1969 .
[30] C. Cramer,et al. Aqueous solvation free energies of ions and ion-water clusters based on an accurate value for the absolute aqueous solvation free energy of the proton. , 2006, The journal of physical chemistry. B.
[31] R. Rosenfeld. Nature , 2009, Otolaryngology--head and neck surgery : official journal of American Academy of Otolaryngology-Head and Neck Surgery.
[32] W. L. Jorgensen,et al. Development and Testing of the OPLS All-Atom Force Field on Conformational Energetics and Properties of Organic Liquids , 1996 .
[33] F. Young. Biochemistry , 1955, The Indian Medical Gazette.
[34] A. Becke,et al. Density-functional exchange-energy approximation with correct asymptotic behavior. , 1988, Physical review. A, General physics.
[35] R. Zwanzig. High‐Temperature Equation of State by a Perturbation Method. I. Nonpolar Gases , 1954 .
[36] H. Scheraga,et al. The Influence of Hydrogen and Hydrophobic Bonds on the Stability of the Carboxylic Acid Dimers in Aqueous Solution , 1964 .
[37] S. Canuto,et al. Solvent effects in chemical processes. water-assisted proton transfer reaction of pterin in aqueous environment. , 2009, The journal of physical chemistry. A.
[38] P. Kollman,et al. A Second Generation Force Field for the Simulation of Proteins, Nucleic Acids, and Organic Molecules , 1995 .
[39] H. Noguchi,et al. Liquid structure of acetic acid-water and trifluoroacetic acid-water mixtures studied by large-angle X-ray scattering and NMR. , 2007, The journal of physical chemistry. B.
[40] Jacopo Tomasi,et al. A new definition of cavities for the computation of solvation free energies by the polarizable continuum model , 1997 .
[41] J. Tomasi,et al. Ab initio study of solvated molecules: A new implementation of the polarizable continuum model , 1996 .
[42] S. F. Boys,et al. The calculation of small molecular interactions by the differences of separate total energies. Some procedures with reduced errors , 1970 .
[43] W. L. Jorgensen,et al. Monte Carlo simulation of differences in free energies of hydration , 1985 .
[44] Anna-Pitschna E. Kunz,et al. A comparison of methods to compute the potential of mean force. , 2007, Chemphyschem : a European journal of chemical physics and physical chemistry.
[45] R. Longo,et al. Solute relaxation on the solvatochromism of ortho-betaine dyes. A sequential Monte Carlo/quantum mechanics study , 2004 .
[46] A. Smith,et al. Soil Science , 1965, Nature.
[47] R. Wolfenden,et al. Interaction of the peptide bond with solvent water: a vapor phase analysis. , 1978, Biochemistry.
[48] J. Tomasi,et al. Quantum mechanical continuum solvation models. , 2005, Chemical reviews.
[49] J. Chocholousová,et al. Acetic Acid Dimer in the Gas Phase, Nonpolar Solvent, Microhydrated Environment, and Dilute and Concentrated Acetic Acid: Ab Initio Quantum Chemical and Molecular Dynamics Simulations , 2003 .
[50] Dudley H. Williams,et al. The cost of conformational order: entropy changes in molecular associations , 1992 .
[51] C. Tomes. CHEMISTRY AND PHYSICS , 1903 .
[52] Daniel Tunega,et al. Adsorption of organic substances on broken clay surfaces: A quantum chemical study , 2003, J. Comput. Chem..
[53] F. J. Luque,et al. Dimerization of Carboxylic Acids: Reliability of Theoretical Calculations and the Effect of Solvent , 1998 .
[54] Charles L Brooks,et al. Revisiting the carboxylic acid dimers in aqueous solution: interplay of hydrogen bonding, hydrophobic interactions, and entropy. , 2008, The journal of physical chemistry. B.
[55] A. Klamt. Conductor-like Screening Model for Real Solvents: A New Approach to the Quantitative Calculation of Solvation Phenomena , 1995 .
[56] P. P. Ewald. Die Berechnung optischer und elektrostatischer Gitterpotentiale , 1921 .
[57] H. Lischka,et al. Interaction of the 2,4‐dichlorophenoxyacetic acid herbicide with soil organic matter moieties: a theoretical study , 2007 .
[58] B. Cabral,et al. Solvent Effects on the Energetics of the Phenol O-H Bond: Differential Solvation of Phenol and Phenoxy Radical in Benzene and Acetonitrile , 2003 .
[59] William L. Jorgensen,et al. Relative partition coefficients for organic solutes from fluid simulations , 1990 .
[60] H. Lischka,et al. SORPTION OF PHENOXYACETIC ACID HERBICIDES ON THE KAOLINITE MINERAL SURFACE – AN AB INITIO MOLECULAR DYNAMICS SIMULATION , 2004 .
[61] H. F. Shurvell,et al. Application of factor analysis and band contour resolution techniques to the Raman spectra of acetic acid in aqueous solution , 1987 .
[62] William L. Jorgensen,et al. Efficient computation of absolute free energies of binding by computer simulations. Application to the methane dimer in water , 1988 .