Viruses of Haloarchaea
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Timothy J. Williams | Ricardo Cavicchioli | R. Garrett | T. Williams | H. Klenk | R. Cavicchioli | R. Papke | S. Erdmann | R. Thane Papke | Susanne Erdmann | Alison W. S. Luk | Michael W. W. Adams
[1] W. Doolittle,et al. Phage evolution: New worlds of genomic diversity , 2003, Current Biology.
[2] L. Paulin,et al. Related haloarchaeal pleomorphic viruses contain different genome types , 2012, Nucleic acids research.
[3] Matthew Z. DeMaere,et al. High level of intergenera gene exchange shapes the evolution of haloarchaea in an isolated Antarctic lake , 2013, Proceedings of the National Academy of Sciences.
[4] Charles A. Bowman,et al. Snapshot of haloarchaeal tailed virus genomes , 2013, RNA biology.
[5] Michael S. Spilman,et al. Functional domains of the bacteriophage P2 scaffolding protein: identification of residues involved in assembly and protease activity. , 2009, Virology.
[6] Yuan-ming Luo,et al. Sulfolobus tengchongensis Spindle-Shaped Virus STSV1: Virus-Host Interactions and Genomic Features , 2005, Journal of Virology.
[7] W. Doolittle,et al. Transformation methods for halophilic archaebacteria. , 1989, Canadian journal of microbiology.
[8] M. Dyall-Smith,et al. HF1 and HF2: novel bacteriophages of halophilic archaea. , 1993, Virology.
[9] M. Dyall-Smith,et al. His1, an Archaeal Virus of theFuselloviridae Family That Infects Haloarcula hispanica , 1998, Journal of Virology.
[10] I. Wang,et al. Bacteriophage Adsorption Rate and Optimal Lysis Time , 2008, Genetics.
[11] H. Schnabel,et al. Structural variability in the genome of phage ϕH of Halobacterium halobium , 1982, Molecular and General Genetics MGG.
[12] G. Bratbak,et al. Viral lysis and bacterivory as prokaryotic loss factors along a salinity gradient , 1996 .
[13] Shiraz A. Shah,et al. Archaeal CRISPR-based immune systems: exchangeable functional modules. , 2011, Trends in microbiology.
[14] D. Oesterhelt,et al. Isolation of a halobacterial phage with a fully cytosine-methylated genome , 1988, Molecular and General Genetics MGG.
[15] Harri T Jäälinoja,et al. Structure and host-cell interaction of SH1, a membrane-containing, halophilic euryarchaeal virus , 2008, Proceedings of the National Academy of Sciences.
[16] M. Dyall-Smith,et al. 28 The Isolation and Study of Viruses of Halophilic Microorganisms , 2006 .
[17] E. Casamayor,et al. Changes in archaeal, bacterial and eukaryal assemblages along a salinity gradient by comparison of genetic fingerprinting methods in a multipond solar saltern. , 2002, Environmental microbiology.
[18] H. Schnabel. An immune strain of Halobacterium halobium carries the invertible L segment of phage PhiH as a plasmid. , 1984, Proceedings of the National Academy of Sciences of the United States of America.
[19] D. Stuart,et al. Structure unifies the viral universe. , 2012, Annual review of biochemistry.
[20] G. Bertani. Transduction-Like Gene Transfer in the MethanogenMethanococcus voltae , 1999, Journal of bacteriology.
[21] F. Blattner,et al. Genome of Bacteriophage P1 , 2004, Journal of bacteriology.
[22] A. Marchfelder,et al. The immune system of halophilic archaea , 2012, Mobile genetic elements.
[23] Fernando Santos,et al. Reconstructing Viral Genomes from the Environment Using Fosmid Clones: The Case of Haloviruses , 2012, PloS one.
[24] F. Rodríguez-Valera,et al. Genomic plasticity in prokaryotes: the case of the square haloarchaeon , 2007, The ISME Journal.
[25] D. Bamford,et al. Archaeal viruses and bacteriophages: comparisons and contrasts. , 2014, Trends in microbiology.
[26] J. Antón,et al. Archaeal Biodiversity in Crystallizer Ponds from a Solar Saltern: Culture versus PCR , 2000, Microbial Ecology.
[27] H. Ackermann. Tailed Bacteriophages: The Order Caudovirales , 1998, Advances in Virus Research.
[28] R. E. MacDonald,et al. Salt-dependent bacteriophage infecting Halobacterium cutirubrum and H. halobium , 1975, Nature.
[29] Pascal Lapierre,et al. Low Species Barriers in Halophilic Archaea and the Formation of Recombinant Hybrids , 2012, Current Biology.
[30] U. Baranyi,et al. The lysogenic region of virus φCh1: identification of a repressor-operator system and determination of its activity in halophilic Archaea , 2007, Extremophiles.
[31] H. Scholz,et al. Haloarchaeal myovirus φCh1 harbours a phase variation system for the production of protein variants with distinct cell surface adhesion specificities , 2012, Molecular microbiology.
[32] H. Scholz,et al. Inversion within the haloalkaliphilic virus φCh1 DNA results in differential expression of structural proteins , 2004, Molecular microbiology.
[33] D. Bamford,et al. Closely Related Archaeal Haloarcula hispanica Icosahedral Viruses HHIV-2 and SH1 Have Nonhomologous Genes Encoding Host Recognition Functions , 2012, Journal of Virology.
[34] W. Zillig,et al. In vivo studies on the effects of immunity genes on early lytic transcription in the Halobacterium salinarium phage ϕ H , 1992, Molecular and General Genetics MGG.
[35] Jacques Nicolas,et al. CRISPI: a CRISPR interactive database , 2009, Bioinform..
[36] Nisse Kalkkinen,et al. An ssDNA virus infecting archaea: a new lineage of viruses with a membrane envelope , 2009, Molecular microbiology.
[37] H. Schnabel,et al. Halobacterium halobium phage øH , 1982, The EMBO journal.
[38] M. Krupovic,et al. Order to the Viral Universe , 2010, Journal of Virology.
[39] I. Dundas,et al. Persisting Phage Infection in Halobacterium salinarium str. 1 , 1980 .
[40] Pentti Somerharju,et al. New, Closely Related Haloarchaeal Viral Elements with Different Nucleic Acid Types , 2010, Journal of Virology.
[41] C. Pauling. Bacteriophages of Halobacterium halobium: isolated from fermented fish sauce and primary characterization. , 1982, Canadian journal of microbiology.
[42] Brian C. Thomas,et al. Dynamic Viral Populations in Hypersaline Systems as Revealed by Metagenomic Assembly , 2012, Applied and Environmental Microbiology.
[43] W. Zillig,et al. Gene Regulation in Halophage ΦH; more than Promoters , 1993 .
[44] T. Allers,et al. Archaeal genetics — the third way , 2005, Nature Reviews Genetics.
[45] J. Bamford,et al. Viruses and Life: Can There Be One Without the Other? , 2010 .
[46] R. Barrangou,et al. CRISPR-Cas systems in bacteria and archaea: versatile small RNAs for adaptive defense and regulation. , 2011, Annual review of genetics.
[47] Prokaryote viruses studied by electron microscopy , 2012, Archives of Virology.
[48] G. Bratbak,et al. Occurrence of virus-like particles in the Dead Sea , 1997, Extremophiles.
[49] I. Dundas,et al. Bacteriophage of Halobacterium salinarium , 1974, Nature.
[50] Zhiwei Zhao,et al. Genome Sequence of Halorubrum sp. Strain T3, an Extremely Halophilic Archaeon Harboring a Virus-Like Element , 2012, Journal of bacteriology.
[51] J. Banfield,et al. De novo metagenomic assembly reveals abundant novel major lineage of Archaea in hypersaline microbial communities , 2011, The ISME Journal.
[52] P. Laurinmäki,et al. Structure of the archaeal head-tailed virus HSTV-1 completes the HK97 fold story , 2013, Proceedings of the National Academy of Sciences.
[53] M. Dyall-Smith,et al. The transcription programme of the protein-primed halovirus SH1. , 2008, Microbiology.
[54] A. Oren,et al. Halobacterium salinarum nom. corrig., a Name To Replace Halobacterium salinarium (Elazari-Volcani) and To Include Halobacterium halobium and Halobacterium cutirubrum , 1996 .
[55] Philippe Horvath,et al. The CRISPR/Cas bacterial immune system cleaves bacteriophage and plasmid DNA , 2010, Nature.
[56] Paul Grayson,et al. Real-time observations of single bacteriophage λ DNA ejections in vitro , 2007, Proceedings of the National Academy of Sciences.
[57] W. Lubitz,et al. Characterization of Natronobacterium magadii phage ΦCh1, a unique archaeal phage containing DNA and RNA , 1997, Molecular microbiology.
[58] P. Laurinmäki,et al. Insights into Head-Tailed Viruses Infecting Extremely Halophilic Archaea , 2013, Journal of Virology.
[59] Sen-Lin Tang,et al. Haloarchaeal viruses: how diverse are they? , 2003, Research in microbiology.
[60] J. Maniloff,et al. Identification of an enveloped phage, mycoplasma virus L172, that contains a 14-kilobase single-stranded DNA genome , 1985, Journal of virology.
[61] E. Roine,et al. Quantitative dissociation of archaeal virus SH1 reveals distinct capsid proteins and a lipid core. , 2006, Virology.
[62] H. Scholz,et al. Natrialba magadii virus φCh1: first complete nucleotide sequence and functional organization of a virus infecting a haloalkaliphilic archaeon , 2002, Molecular microbiology.
[63] D. Bamford,et al. Virus-host interactions in environments with a wide range of ionic strengths. , 2009, Environmental microbiology reports.
[64] J. Antón,et al. The metavirome of a hypersaline environment. , 2010, Environmental microbiology.
[65] J. Banfield,et al. Virus-Host and CRISPR Dynamics in Archaea-Dominated Hypersaline Lake Tyrrell, Victoria, Australia , 2013, Archaea.
[66] Friedhelm Pfeiffer,et al. An Archaeal Immune System Can Detect Multiple Protospacer Adjacent Motifs (PAMs) to Target Invader DNA* , 2012, The Journal of Biological Chemistry.
[67] Shiraz A Shah,et al. CRISPR adaptive immune systems of Archaea , 2014, RNA biology.
[68] E. Roine,et al. Global network of specific virus-host interactions in hypersaline environments. , 2012, Environmental microbiology.
[69] Restriction and modification of Halophage S45 inHalobacterium , 1984, Current Microbiology.
[70] J. Antón,et al. Metatranscriptomic analysis of extremely halophilic viral communities , 2011, The ISME Journal.
[71] R. Rachel,et al. Alternative flagellar filament types in the haloarchaeon Haloarcula marismortui. , 2008, Canadian journal of microbiology.
[72] Roger W. Hendrix,et al. Length determination in bacteriophage lambda tails , 1984, Cell.
[73] Larry L. Daniels,et al. Ecophysiology of Bacteriophage S5100 Infecting Halobacterium cutirubrum , 1990, Applied and environmental microbiology.
[74] J. Bamford,et al. A Unique Group of Virus-Related, Genome-Integrating Elements Found Solely in the Bacterial Family Thermaceae and the Archaeal Family Halobacteriaceae , 2010, Journal of bacteriology.
[75] O. Kandler,et al. Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya. , 1990, Proceedings of the National Academy of Sciences of the United States of America.
[76] M. Dyall-Smith,et al. Virus-host interactions in salt lakes. , 2007, Current opinion in microbiology.
[77] R. Terns,et al. CRISPR-based adaptive immune systems. , 2011, Current opinion in microbiology.
[78] J. Antón,et al. Virioplankton Community Structure in Tunisian Solar Salterns , 2012, Applied and Environmental Microbiology.
[79] O. Zhaxybayeva,et al. Gene transfer agents: phage-like elements of genetic exchange , 2012, Nature Reviews Microbiology.
[80] R. Garrett,et al. Chaperone Role for Proteins p618 and p892 in the Extracellular Tail Development of Acidianus Two-Tailed Virus , 2011, Journal of Virology.
[81] P. Forterre,et al. The archeoviruses. , 2011, FEMS microbiology reviews.
[82] E. Roine,et al. A Glimpse of the genomic diversity of haloarchaeal tailed viruses , 2014, Front. Microbiol..
[83] D. Prangishvili. The wonderful world of archaeal viruses. , 2013, Annual review of microbiology.
[84] E. Roine,et al. The Single-Stranded DNA Genome of Novel Archaeal Virus Halorubrum Pleomorphic Virus 1 Is Enclosed in the Envelope Decorated with Glycoprotein Spikes , 2009, Journal of Virology.
[85] R. Garrett,et al. Virology: Independent virus development outside a host , 2005, Nature.
[86] P. Forterre,et al. Comparative analysis of the mosaic genomes of tailed archaeal viruses and proviruses suggests common themes for virion architecture and assembly with tailed viruses of bacteria. , 2010, Journal of molecular biology.
[87] D. Bamford,et al. Virion Architecture Unifies Globally Distributed Pleolipoviruses Infecting Halophilic Archaea , 2012, Journal of Virology.
[88] W. Zillig,et al. Antisense RNA mediates transcriptional processing in an archaebacterium, indicating a novel kind of RNase activity , 1993, Molecular Microbiology.
[89] R. Cavicchioli. Extremophiles and the search for extraterrestrial life. , 2002, Astrobiology.
[90] A. Simpson,et al. Halocafeteria seosinensis gen. et sp. nov. (Bicosoecida), a halophilic bacterivorous nanoflagellate isolated from a solar saltern , 2006, Extremophiles.
[91] R. Hendrix. Bacteriophage HK97: assembly of the capsid and evolutionary connections. , 2005, Advances in virus research.
[92] Ibtissem Grissa,et al. The CRISPRdb database and tools to display CRISPRs and to generate dictionaries of spacers and repeats , 2007, BMC Bioinformatics.
[93] W. Zillig,et al. Transcription of the halophage ΦH repressor gene is abolished by transcription from an inversely oriented lytic promoter , 1994, FEBS letters.
[94] R. Sanjuán,et al. Viral Mutation Rates , 2010, Journal of Virology.
[95] Aidan C. Parte,et al. LPSN—list of prokaryotic names with standing in nomenclature , 2013, Nucleic Acids Res..
[96] A. Marchfelder,et al. The ring of confidence: a haloarchaeal CRISPR/Cas system. , 2013, Biochemical Society transactions.
[97] M. Krupovic,et al. Virus evolution: how far does the double β-barrel viral lineage extend? , 2008, Nature Reviews Microbiology.
[98] A. Spang,et al. A thaumarchaeal provirus testifies for an ancient association of tailed viruses with archaea. , 2011, Biochemical Society transactions.
[99] G. Rohrmann,et al. Bacteriophages of Halobacterium halobium: virion DNAs and proteins. , 1983, Canadian journal of microbiology.
[100] P. Forterre,et al. Unification of the Globally Distributed Spindle-Shaped Viruses of the Archaea , 2013, Journal of Virology.
[101] A. Oren,et al. Diversity of halophilic microorganisms: Environments, phylogeny, physiology, and applications , 2002, Journal of Industrial Microbiology and Biotechnology.
[102] Stan J. J. Brouns,et al. Clustered regularly interspaced short palindromic repeats (CRISPRs): the hallmark of an ingenious antiviral defense mechanism in prokaryotes , 2011, Biological chemistry.
[103] R. Garrett,et al. Viruses of the Archaea: a unifying view , 2006, Nature Reviews Microbiology.
[104] R. Garrett,et al. Viruses of hyperthermophilic Crenarchaea. , 2005, Trends in microbiology.
[105] Y. Liu,et al. Temperate membrane-containing halophilic archaeal virus SNJ1 has a circular dsDNA genome identical to that of plasmid pHH205. , 2012, Virology.
[106] M. Dyall-Smith,et al. Constituents of SH1, a Novel Lipid-Containing Virus Infecting the Halophilic Euryarchaeon Haloarcula hispanica , 2005, Journal of Virology.
[107] R. Barrangou,et al. CRISPR Provides Acquired Resistance Against Viruses in Prokaryotes , 2007, Science.
[108] D. Bamford,et al. Modified coat protein forms the flexible spindle-shaped virion of haloarchaeal virus His1. , 2013, Environmental microbiology.
[109] F. Pfeifer,et al. Transformation of Halobacterium halobium: development of vectors and investigation of gas vesicle synthesis. , 1990, Proceedings of the National Academy of Sciences of the United States of America.
[110] Ricardo Cavicchioli,et al. Archaea — timeline of the third domain , 2011, Nature Reviews Microbiology.
[111] Sen-Lin Tang,et al. Haloviruses HF1 and HF2: Evidence for a Recent and Large Recombination Event , 2004, Journal of bacteriology.
[112] S. Schuster,et al. Haloquadratum walsbyi : Limited Diversity in a Global Pond , 2011, PloS one.
[113] Jong Soo Park,et al. Active flagellates grazing on prokaryotes in high salinity waters of a solar saltern , 2003 .
[114] Y. Bettarel,et al. Ecological traits of planktonic viruses and prokaryotes along a full-salinity gradient. , 2011, FEMS microbiology ecology.
[115] B. Jones,et al. Sequence analysis of an Archaeal virus isolated from a hypersaline lake in Inner Mongolia, China , 2007, BMC Genomics.
[116] Molecular characterization of pHRDV1, a new virus-like mobile genetic element closely related to pleomorphic viruses in haloarchaea , 2014, Extremophiles.
[117] M. Krupovic,et al. Gammasphaerolipovirus, a newly proposed bacteriophage genus, unifies viruses of halophilic archaea and thermophilic bacteria within the novel family Sphaerolipoviridae , 2014, Archives of Virology.
[118] E. Koonin,et al. Is evolution Darwinian or/and Lamarckian? , 2009, Biology Direct.
[119] D. Stuart,et al. What does structure tell us about virus evolution? , 2005, Current opinion in structural biology.
[120] D. Bamford,et al. The Closest Relatives of Icosahedral Viruses of Thermophilic Bacteria Are among Viruses and Plasmids of the Halophilic Archaea , 2009, Journal of Virology.
[121] R. Amann,et al. Metagenomic approach to the study of halophages: the environmental halophage 1. , 2007, Environmental microbiology.
[122] D. Bamford. Do viruses form lineages across different domains of life? , 2003, Research in microbiology.
[123] R. Stepanauskas,et al. Cell sorting analysis of geographically separated hypersaline environments , 2013, Extremophiles.
[124] H. Xiang,et al. Characterization of CRISPR RNA Biogenesis and Cas6 Cleavage-Mediated Inhibition of a Provirus in the Haloarchaeon Haloferax mediterranei , 2012, Journal of bacteriology.
[125] W. Doolittle,et al. Efficient transfection of the archaebacterium Halobacterium halobium , 1987, Journal of bacteriology.
[126] P. Shen,et al. Induction and preliminary characterization of a novel halophage SNJ1 from lysogenic Natrinema sp. F5. , 2007, Canadian journal of microbiology.
[127] B. Rodriguez-Mueller,et al. Metagenomic islands of hyperhalophiles: the case of Salinibacter ruber , 2009, BMC Genomics.
[128] E. Roine,et al. Lipids of Archaeal Viruses , 2012, Archaea.
[129] E. Hæggström,et al. DNA ejection from an archaeal virus--a single-molecule approach. , 2013, Biophysical journal.
[130] M. Dyall-Smith,et al. Halophage HF2: genome organization and replication strategy , 1995, Journal of virology.
[131] Shiraz A. Shah,et al. A novel single-tailed fusiform Sulfolobus virus STSV2 infecting model Sulfolobus species , 2013, Extremophiles.
[132] R. M. Burnett,et al. Does common architecture reveal a viral lineage spanning all three domains of life? , 2004, Molecular cell.
[133] Philippe Horvath,et al. Phage Response to CRISPR-Encoded Resistance in Streptococcus thermophilus , 2007, Journal of bacteriology.
[134] J. Oost,et al. Unravelling the structural and mechanistic basis of CRISPR–Cas systems , 2014, Nature Reviews Microbiology.
[135] In vivo and in vitro analysis of transcription of the L region from the Halobacterium salinarium phage phi H: definition of a repressor-enhancing gene. , 1993, Virology.
[136] Sen-Lin Tang,et al. PH1: An Archaeovirus of Haloarcula hispanica Related to SH1 and HHIV-2 , 2013, Archaea.
[137] Matthew S. Fullmer,et al. Population and genomic analysis of the genus Halorubrum , 2014, Front. Microbiol..
[138] M. Dyall-Smith,et al. His1 and His2 are distantly related, spindle-shaped haloviruses belonging to the novel virus group, Salterprovirus. , 2006, Virology.
[139] P. Laurinmäki,et al. Biochemical and structural characterisation of membrane-containing icosahedral dsDNA bacteriophages infecting thermophilic Thermus thermophilus. , 2008, Virology.
[140] J. Peter Gogarten,et al. Quantifying Homologous Replacement of Loci between Haloarchaeal Species , 2012, Genome biology and evolution.
[141] R. Stepanauskas,et al. New Abundant Microbial Groups in Aquatic Hypersaline Environments , 2011, Scientific reports.
[142] M. Dyall-Smith,et al. SH1: A novel, spherical halovirus isolated from an Australian hypersaline lake. , 2005, Virology.
[143] Shiladitya DasSarma,et al. Extreme Halophiles Are Models for Astrobiology , 2006 .
[144] W. Zillig,et al. Expression and regulation of Halobacterium halobium phage ΦH genes , 1989 .
[145] Sen-Lin Tang,et al. HF2: a double‐stranded DNA tailed haloarchaeal virus with a mosaic genome , 2002, Molecular microbiology.
[146] M. Dyall-Smith,et al. Transfection of haloarchaea by the DNAs of spindle and round haloviruses and the use of transposon mutagenesis to identify non‐essential regions , 2008, Molecular microbiology.
[147] P. Forterre,et al. Diversity of virus-host systems in hypersaline Lake Retba, Senegal. , 2011, Environmental microbiology.
[148] W. Jacobs,et al. Origins of Highly Mosaic Mycobacteriophage Genomes , 2003, Cell.