From replicators to reproducers: the first major transitions leading to life.

A classification of replicators is proposed: life depends on replicators that can exist in an indefinitely large number of forms (unlimited heredity), and whose replication is modular rather than processive. The first template replicators would have increased at a rate less than exponential, because of self-inhibition arising from molecular complementarity. The result would be the survival of a varied population of replicators, rather than the victory of one type. This variability was important, because inaccurate copying meant that individual replicators were small (Eigen's paradox). The origin of cooperation between replicators, and the problem of molecular parasites, are discussed. Today, cooperation depends on cellular compartments, and on the linkage of genes on chromosomes, but we argue that at an earlier stage surface metabolism, in which replicators react only with neighbours, was important. The origin of translation and the genetic code is discussed. The essential step is the binding of amino acids to specific oligonucleotides. We suggest that this binding originated, not as a step in protein synthesis, but in the formation of coenzymes in a metabolically complex RNA world. Existing organisms are not replicators (that is, new individuals do not arise by copying), but reproducers that contain replicators. We outline Griesemer's concept of a reproducer, which brings out the essential role of development in evolution.

[1]  E. Leigh When does the good of the group override the advantage of the individual? , 1983, Proceedings of the National Academy of Sciences of the United States of America.

[2]  John Maynard Smith,et al.  The major evolutionary transitions , 1995, Nature.

[3]  E. Szathmáry,et al.  The integration of the earliest genetic information. , 1989, Trends in ecology & evolution.

[4]  G. Wächtershäuser,et al.  Before enzymes and templates: theory of surface metabolism. , 1988, Microbiological reviews.

[5]  I. Majerfeld,et al.  An RNA pocket for an aliphatic hydrophobe , 1994, Nature Structural Biology.

[6]  Eörs Szathmáry,et al.  Self-Replication and Reproduction: From Molecules to Protocells , 1994 .

[7]  E. Szathmáry,et al.  The evolution of information storage and heredity. , 1995, Trends in ecology & evolution.

[8]  E. Szathmáry,et al.  Simple growth laws and selection consequences. , 1991, Trends in ecology & evolution.

[9]  Michael Famulok,et al.  Molecular Recognition of Amino Acids by RNA-Aptamers: An L-Citrulline Binding RNA Motif and Its Evolution into an L-Arginine Binder , 1994 .

[10]  R. Lewontin ‘The Selfish Gene’ , 1977, Nature.

[11]  E. Szathmáry,et al.  Group selection of early replicators and the origin of life. , 1987, Journal of theoretical biology.

[12]  M Yarus,et al.  A specific amino acid binding site composed of RNA. , 1988, Science.

[13]  Ron Dagani Synthetic self-replicating molecules show more signs of life , 1992 .

[14]  Bernd-Olaf Küppers Molecular Theory of Evolution: Outline of a Physico-Chemical Theory of the Origin of Life , 1983 .

[15]  E. Szathmáry,et al.  The origin of chromosomes. I. Selection for linkage. , 1993, Journal of theoretical biology.

[16]  M. Eigen,et al.  The Hypercycle: A principle of natural self-organization , 2009 .

[17]  H. B. White 1 – Evolution of Coenzymes and the Origin of Pyridine Nucleotides , 1982 .

[18]  E. Szathmáry,et al.  Sub-exponential growth and coexistence of non-enzymatically replicating templates. , 1989, Journal of theoretical biology.

[19]  F. H. C. CRICK,et al.  Origin of the Genetic Code , 1967, Nature.

[20]  M. Illangasekare,et al.  Aminoacyl-RNA synthesis catalyzed by an RNA , 1995, Science.

[21]  M. Shimizu Specific aminoacylation of C4N hairpin RNAs with the cognate aminoacyl-adenylates in the presence of a dipeptide: origin of the genetic code. , 1995, Journal of biochemistry.

[22]  E. Szathmáry,et al.  Four letters in the genetic alphabet: a frozen evolutionary optimum? , 1991, Proceedings of the Royal Society of London. Series B: Biological Sciences.

[23]  Jack W. Szostak,et al.  An RNA motif that binds ATP , 1993, Nature.

[24]  Michael Famulok,et al.  Stereospecific recognition of tryptophan agarose by in vitro selected RNA , 1992 .

[25]  Paulien Hogeweg,et al.  Spiral wave structure in pre-biotic evolution: hypercycles stable against parasites , 1991 .

[26]  C R Woese,et al.  The molecular basis for the genetic code. , 1966, Proceedings of the National Academy of Sciences of the United States of America.

[27]  P G Schultz,et al.  Selective chemical catalysis by an antibody. , 1986, Science.

[28]  J. Szostak,et al.  In vitro selection of RNA aptamers specific for cyanocobalamin. , 1994, Biochemistry.

[29]  John Maynard Smith,et al.  Models of evolution , 1983, Proceedings of the Royal Society of London. Series B. Biological Sciences.

[30]  Eörs Szathmáry,et al.  The Major Transitions in Evolution , 1997 .

[31]  David Sloan Wilson,et al.  The Natural Selection Of Populations And Communities , 1981 .

[32]  H. Noller,et al.  Unusual resistance of peptidyl transferase to protein extraction procedures. , 1992, Science.

[33]  P. Schuster,et al.  Statistics of landscapes based on free energies, replication and degradation rate constants of RNA secondary structures , 1991 .

[34]  J W Szostak,et al.  In vitro genetics. , 1992, Trends in biochemical sciences.

[35]  G W Hoffmann,et al.  On the origin of the genetic code and the stability of the translation apparatus. , 1974, Journal of molecular biology.

[36]  T. Cavalier-smith,et al.  Intron phylogeny: a new hypothesis. , 1991, Trends in genetics : TIG.

[37]  P. Schultz,et al.  Expanding the scope of RNA catalysis. , 1994, Science.

[38]  T. Gánti Organization of chemical reactions into dividing and metabolizing units: the chemotons. , 1975, Bio Systems.

[39]  L. Orgel,et al.  Autocatalytic synthesis of a tetranucleotide analogue , 1987, Nature.

[40]  Günter von Kiedrowski,et al.  Minimal Replicator Theory I: Parabolic Versus Exponential Growth , 1993 .

[41]  M. Yarus An RNA-amino acid complex and the origin of the genetic code. , 1991, The New biologist.

[42]  Adding to the genetic alphabet , 1990, Nature.

[43]  John Maynard Smith,et al.  Hypercycles and the origin of life , 1979, Nature.

[44]  Steven A. Benner,et al.  Enzymatic incorporation of a new base pair into DNA and RNA extends the genetic alphabet , 1990, Nature.

[45]  George C. Williams,et al.  Adaptation and Natural Selection , 2018 .

[46]  A. Weiner,et al.  tRNA-like structures tag the 3' ends of genomic RNA molecules for replication: implications for the origin of protein synthesis. , 1987, Proceedings of the National Academy of Sciences of the United States of America.

[47]  S. Altman,et al.  A trinucleotide can promote metal ion-dependent specific cleavage of RNA. , 1992, Proceedings of the National Academy of Sciences of the United States of America.

[48]  E. Szathmáry Towards the evolution of ribozymes , 1990, Nature.

[49]  M. Shimizu Specific Interactions of Dinucleoside Monophosphates with their Cognate Amino Acids , 1987 .

[50]  L. Orgel,et al.  Molecular replication , 1992, Nature.

[51]  D. Sievers,et al.  Self-replication of complementary nucleotide-based oligomers , 1994, Nature.

[52]  R. Sokal Evolutionary Genetics , 1972, The Quarterly Review of Biology.

[53]  Jack W. Szostak,et al.  In vitro evolution of a self-alkylatlng ribozyme , 1995, Nature.

[54]  Eörs Szathmáry,et al.  A re-exam ination of the stochastic corrector model , 1995, Proceedings of the Royal Society of London. Series B: Biological Sciences.

[55]  John Maynard Smith,et al.  Natural Selection and the Concept of a Protein Space , 1970, Nature.

[56]  H. Noller,et al.  Aminoacyl esterase activity of the Tetrahymena ribozyme. , 1992, Science.

[57]  S A Benner,et al.  Modern metabolism as a palimpsest of the RNA world. , 1989, Proceedings of the National Academy of Sciences of the United States of America.

[58]  L. Orgel,et al.  The maintenance of the accuracy of protein synthesis and its relevance to ageing. , 1963, Proceedings of the National Academy of Sciences of the United States of America.

[59]  D. Hull Individuality and Selection , 1980 .

[60]  G. Wächtershäuser Life in a ligand sphere. , 1994, Proceedings of the National Academy of Sciences of the United States of America.

[61]  L. Orgel Evolution of the genetic apparatus. , 1968, Journal of molecular biology.

[62]  E. Szathmáry,et al.  A classification of replicators and lambda-calculus models of biological organization , 1995, Proceedings of the Royal Society of London. Series B: Biological Sciences.

[63]  D. Bartel,et al.  Isolation of new ribozymes from a large pool of random sequences [see comment]. , 1993, Science.

[64]  B. Ganem RNA world , 1987, Nature.

[65]  Jon R. Lorsch,et al.  In vitro evolution of new ribozymes with polynucleotide kinase activity , 1994, Nature.

[66]  S. Benner,et al.  Natural selection, protein engineering, and the last riboorganism: rational model building in biochemistry. , 1987, Cold Spring Harbor symposia on quantitative biology.

[67]  G. F. Joyce,et al.  Cleavage of an amide bond by a ribozyme , 1995, Science.

[68]  G. Wächtershäuser,et al.  Groundworks for an evolutionary biochemistry: the iron-sulphur world. , 1992, Progress in biophysics and molecular biology.

[69]  D. Shub,et al.  Self-splicing introns in tRNA genes of widely divergent bacteria , 1992, Nature.

[70]  S Rodin,et al.  Transfer RNAs with complementary anticodons: could they reflect early evolution of discriminative genetic code adaptors? , 1993, Proceedings of the National Academy of Sciences of the United States of America.

[71]  T. Cavalier-smith,et al.  The Simultaneous Symbiotic Origin of Mitochondria, Chloroplasts, and Microbodies , 1987, Annals of the New York Academy of Sciences.

[72]  Mikael Cronhjort,et al.  Hypercycles versus Parasites in a Two Dimensional Partial Differential Equations Model , 1994 .

[73]  P. Burgstaller,et al.  Isolation of RNA Aptamers for Biological Cofactors by In Vitro Selection , 1994 .

[74]  V. Volterra,et al.  Population growth, equilibria, and extinction under specified breeding conditions: a development and extension of the theory of the logistic curve , 1978 .

[75]  Richard E. Michod,et al.  Population Biology of the First Replicators: On the Origin of the Genotype, Phenotype and Organism , 1983 .

[76]  E. Szathmáry Coding Coenzyme Handles and the Origin of the Genetic Code , 1996 .

[77]  E. Szathmáry,et al.  Coding coenzyme handles: a hypothesis for the origin of the genetic code. , 1993, Proceedings of the National Academy of Sciences of the United States of America.