Molecular requirements for transition from lateral to end-on microtubule binding and dynamic coupling

Accurate chromosome segregation relies on microtubule end conversion, the ill-understood ability of kinetochores to transit from lateral microtubule attachment to durable association with dynamic microtubule plus-ends. The molecular requirements for this conversion and the underlying biophysical mechanisms are ill-understood. We reconstituted end conversion in vitro using two kinetochore components: the plus end–directed kinesin CENP-E and microtubule-binding Ndc80 complex, combined on the surface of a microbead. The primary role of CENP-E is to ensure close proximity between Ndc80 complexes and the microtubule plus-end, whereas Ndc80 complexes provide lasting microtubule association by diffusing on the microtubule wall near its tip. Together, these proteins mediate robust plus-end coupling during several rounds of microtubule dynamics, in the absence of any specialized tip-binding or regulatory proteins. Using a Brownian dynamics model, we show that end conversion is an emergent property of multimolecular ensembles of microtubule wall-binding proteins with finely tuned force-dependent motility characteristics.

[1]  Ronald D. Vale,et al.  Engineering the Processive Run Length of the Kinesin Motor , 2000, The Journal of cell biology.

[2]  A. V. Zaytsev,et al.  Multisite phosphorylation of the NDC80 complex gradually tunes its microtubule-binding affinity , 2015, Molecular biology of the cell.

[3]  L. Rice,et al.  Microtubule dynamics: an interplay of biochemistry and mechanics , 2018, Nature Reviews Molecular Cell Biology.

[4]  Erkan Tüzel,et al.  Transport by populations of fast and slow kinesins uncovers novel family-dependent motor characteristics important for in vivo function. , 2014, Biophysical journal.

[5]  J. McIntosh,et al.  Different assemblies of the DAM1 complex follow shortening microtubules by distinct mechanisms , 2008, Proceedings of the National Academy of Sciences.

[6]  T. Richmond,et al.  MultiBac: Multigene Baculovirus‐Based Eukaryotic Protein Complex Production , 2008, Current protocols in protein science.

[7]  E. Salmon,et al.  Vertebrate kinetochore protein architecture: protein copy number , 2010, The Journal of cell biology.

[8]  Antoine M. van Oijen,et al.  CLASP promotes microtubule rescue by recruiting tubulin dimers to the microtubule. , 2010, Developmental cell.

[9]  M. Schnitzer,et al.  Force production by single kinesin motors , 2000, Nature Cell Biology.

[10]  Stefan Westermann,et al.  The Dam1 complex confers microtubule plus end–tracking activity to the Ndc80 kinetochore complex , 2010, The Journal of cell biology.

[11]  Fenglou Mao,et al.  Potential of mean force for protein–protein interaction studies , 2002, Proteins.

[12]  T. L. Hill Theoretical problems related to the attachment of microtubules to kinetochores. , 1985, Proceedings of the National Academy of Sciences of the United States of America.

[13]  A. Desai,et al.  Molecular architecture of the kinetochore–microtubule interface , 2008, Nature Reviews Molecular Cell Biology.

[14]  D. Gillespie Exact Stochastic Simulation of Coupled Chemical Reactions , 1977 .

[15]  J. McIntosh,et al.  The dynamic behavior of individual microtubules associated with chromosomes in vitro. , 1998, Molecular biology of the cell.

[16]  Kozo Tanaka Dynamic regulation of kinetochore-microtubule interaction during mitosis. , 2012, Journal of biochemistry.

[17]  Dan Liu,et al.  Human NUF2 Interacts with Centromere-associated Protein E and Is Essential for a Stable Spindle Microtubule-Kinetochore Attachment* , 2007, Journal of Biological Chemistry.

[18]  E. Salmon,et al.  The vertebrate cell kinetochore and its roles during mitosis. , 1998, Trends in cell biology.

[19]  A. Khodjakov,et al.  Mechanisms of chromosome behaviour during mitosis , 2010, Nature Reviews Molecular Cell Biology.

[20]  Joshua W. Shaevitz,et al.  Probing the kinesin reaction cycle with a 2D optical force clamp , 2003, Proceedings of the National Academy of Sciences of the United States of America.

[21]  Yumi Kim,et al.  Kinetochore–microtubule attachment throughout mitosis potentiated by the elongated stalk of the kinetochore kinesin CENP-E , 2014, Molecular biology of the cell.

[22]  D. Compton,et al.  Regulation of kinetochore–microtubule attachments through homeostatic control during mitosis , 2014, Nature Reviews Molecular Cell Biology.

[23]  Neysa Nevins,et al.  Antitumor activity of an allosteric inhibitor of centromere-associated protein-E , 2010, Proceedings of the National Academy of Sciences.

[24]  R. Zinkowski,et al.  CENP‐E, a novel human centromere‐associated protein required for progression from metaphase to anaphase. , 1991, The EMBO journal.

[25]  A. V. Zaytsev,et al.  Preparation of segmented microtubules to study motions driven by the disassembling microtubule ends. , 2014, Journal of visualized experiments : JoVE.

[26]  J. McIntosh,et al.  Chromosome-microtubule interactions during mitosis. , 2002, Annual review of cell and developmental biology.

[27]  A. Kiyatkin,et al.  Kinetochore kinesin CENP-E is a processive bi-directional tracker of dynamic microtubule tips , 2013, Nature Cell Biology.

[28]  Kevin W Eliceiri,et al.  NIH Image to ImageJ: 25 years of image analysis , 2012, Nature Methods.

[29]  J. Yates,et al.  The human kinetochore Ska1 complex facilitates microtubule depolymerization-coupled motility. , 2009, Developmental cell.

[30]  Johan O. L. Andreasson,et al.  Kinesin processivity is gated by phosphate release , 2014, Proceedings of the National Academy of Sciences.

[31]  M. Bathe,et al.  The kinetochore-bound Ska1 complex tracks depolymerizing microtubules and binds to curved protofilaments. , 2012, Developmental cell.

[32]  T. Davis,et al.  The Ndc80 kinetochore complex directly modulates microtubule dynamics , 2012, Proceedings of the National Academy of Sciences.

[33]  Y. Goldman,et al.  Microtubule plus-end tracking by CLIP-170 requires EB1 , 2009, Proceedings of the National Academy of Sciences.

[34]  L. Wilson,et al.  Preparation of microtubule protein and purified tubulin from bovine brain by cycles of assembly and disassembly and phosphocellulose chromatography. , 2010, Methods in cell biology.

[35]  Carsten Janke,et al.  Microtubule detyrosination guides chromosomes during mitosis , 2015, Science.

[36]  E. Nogales,et al.  The Ndc80 kinetochore complex forms oligomeric arrays along microtubules , 2010, Nature.

[37]  Ekaterina V. Tarasovetc,et al.  In vitro reconstitution of lateral to end-on conversion of kinetochore-microtubule attachments. , 2018, Methods in cell biology.

[38]  E. Grishchuk Biophysics of Microtubule End Coupling at the Kinetochore. , 2017, Progress in molecular and subcellular biology.

[39]  A. Desai,et al.  Orientation and structure of the Ndc80 complex on the microtubule lattice , 2008, The Journal of cell biology.

[40]  Gergő Bohner,et al.  EB1 Accelerates Two Conformational Transitions Important for Microtubule Maturation and Dynamics , 2014, Current Biology.

[41]  E. Salmon,et al.  Point centromeres contain more than a single centromere-specific Cse4 (CENP-A) nucleosome , 2011, The Journal of cell biology.

[42]  Liedewij Laan,et al.  Reconstitution of a microtubule plus-end tracking system in vitro , 2007, Nature.

[43]  Steven M Block,et al.  Examining kinesin processivity within a general gating framework , 2015, eLife.

[44]  Kerstin Pingel,et al.  50 Years of Image Analysis , 2012 .

[45]  Anatoly V. Zaytsev,et al.  Accurate phosphoregulation of kinetochore–microtubule affinity requires unconstrained molecular interactions , 2014, The Journal of cell biology.

[46]  L. Goldstein,et al.  CENP-E Is a Plus End–Directed Kinetochore Motor Required for Metaphase Chromosome Alignment , 1997, Cell.

[47]  Yumi Kim,et al.  CENP-E combines a slow, processive motor and a flexible coiled coil to produce an essential motile kinetochore tether , 2008, The Journal of cell biology.

[48]  J. DeLuca,et al.  The NDC80 complex proteins Nuf2 and Hec1 make distinct contributions to kinetochore–microtubule attachment in mitosis , 2011, Molecular biology of the cell.

[49]  Ekaterina V. Tarasovetc,et al.  Microtubule Tip Tracking by the Spindle and Kinetochore Protein Ska1 Requires Diverse Tubulin-Interacting Surfaces , 2017, Current Biology.

[50]  Sam Walcott,et al.  The load dependence of rate constants. , 2008, The Journal of chemical physics.

[51]  J Richard McIntosh,et al.  Tubulin depolymerization may be an ancient biological motor , 2010, Journal of Cell Science.

[52]  Jessica K. Polka,et al.  Implications for Kinetochore-Microtubule Attachment from the Structure of an Engineered Ndc80 Complex , 2008, Cell.

[53]  Andrew D. Franck,et al.  The Ndc80 Kinetochore Complex Forms Load-Bearing Attachments to Dynamic Microtubule Tips via Biased Diffusion , 2009, Cell.

[54]  Mark J. Schnitzer,et al.  Single kinesin molecules studied with a molecular force clamp , 1999, Nature.

[55]  Viji M. Draviam,et al.  Lateral to End-on Conversion of Chromosome-Microtubule Attachment Requires Kinesins CENP-E and MCAK , 2013, Current Biology.

[56]  Ekaterina V. Tarasovetc,et al.  Probing Mitotic CENP-E Kinesin with the Tethered Cargo Motion Assay and Laser Tweezers. , 2018, Biophysical journal.

[57]  S. Rosenfeld,et al.  The mitotic kinesin CENP-E is a processive transport motor , 2008, Proceedings of the National Academy of Sciences.

[58]  S. Diez,et al.  Diffusible Crosslinkers Generate Directed Forces in Microtubule Networks , 2015, Cell.

[59]  M. Valentine,et al.  The +TIP coordinating protein EB1 is highly dynamic and diffusive on microtubules, sensitive to GTP analog, ionic strength, and EB1 concentration , 2016, Cytoskeleton.

[60]  M. Muers Genomics: Building a giant in tiny steps , 2010, Nature Reviews Genetics.

[61]  D. Mastronarde,et al.  Fibrils Connect Microtubule Tips with Kinetochores: A Mechanism to Couple Tubulin Dynamics to Chromosome Motion , 2008, Cell.

[62]  Anatoly V. Zaytsev,et al.  Highly Transient Molecular Interactions Underlie the Stability of Kinetochore–Microtubule Attachment During Cell Division , 2013, Cellular and molecular bioengineering.

[63]  B. McEwen,et al.  Microtubules assemble near most kinetochores during early prometaphase in human cells , 2018, The Journal of cell biology.

[64]  E. Salmon,et al.  Effects of magnesium on the dynamic instability of individual microtubules. , 1990, Biochemistry.

[65]  H. Maiato,et al.  Mechanisms of Chromosome Congression during Mitosis , 2017, Biology.