Prioritizing transcriptomic and epigenomic experiments using an optimization strategy that leverages imputed data
暂无分享,去创建一个
[1] Andreas Krause,et al. Submodular Function Maximization , 2014, Tractability.
[2] William Stafford Noble,et al. Choosing panels of genomics assays using submodular optimization , 2016, Genome Biology.
[3] John Salvatier,et al. Theano: A Python framework for fast computation of mathematical expressions , 2016, ArXiv.
[4] Jacob M. Schreiber,et al. Completing the ENCODE3 compendium yields accurate imputations across a variety of assays and human biosamples , 2019, Genome Biology.
[5] Jimmy Ba,et al. Adam: A Method for Stochastic Optimization , 2014, ICLR.
[6] Data production leads,et al. An integrated encyclopedia of DNA elements in the human genome , 2012 .
[7] ENCODEConsortium,et al. An Integrated Encyclopedia of DNA Elements in the Human Genome , 2012, Nature.
[8] William Stafford Noble,et al. Choosing non‐redundant representative subsets of protein sequence data sets using submodular optimization , 2018, Proteins.
[9] Martin Grötschel,et al. Mathematical Programming The State of the Art, XIth International Symposium on Mathematical Programming, Bonn, Germany, August 23-27, 1982 , 1983, ISMP.
[10] László Lovász,et al. Submodular functions and convexity , 1982, ISMP.
[11] Manolis Kellis,et al. Large-scale epigenome imputation improves data quality and disease variant enrichment , 2015, Nature Biotechnology.
[12] Michael Q. Zhang,et al. Integrative analysis of 111 reference human epigenomes , 2015, Nature.
[13] William Stafford Noble,et al. PREDICTD PaRallel Epigenomics Data Imputation with Cloud-based Tensor Decomposition , 2018, Nature Communications.
[14] Jeff A. Bilmes,et al. Multi-scale deep tensor factorization learns a latent representation of the human epigenome , 2018, bioRxiv.
[15] William Stafford Noble,et al. apricot: Submodular selection for data summarization in Python , 2019, J. Mach. Learn. Res..
[16] William Stafford Noble,et al. Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project , 2007, Nature.
[17] Jacob M. Schreiber,et al. A Genome-wide Framework for Mapping Gene Regulation via Cellular Genetic Screens , 2019, Cell.
[18] M. L. Fisher,et al. An analysis of approximations for maximizing submodular set functions—I , 1978, Math. Program..
[19] Michel Minoux,et al. Accelerated greedy algorithms for maximizing submodular set functions , 1978 .
[20] Satoru Fujishige,et al. Submodular functions and optimization , 1991 .