Discrimination of germline V genes at different sequencing lengths and mutational burdens: A new tool for identifying and evaluating the reliability of V gene assignment.

[1]  F. Alt,et al.  Joining of immunoglobulin heavy chain gene segments: implications from a chromosome with evidence of three D-JH fusions. , 1982, Proceedings of the National Academy of Sciences of the United States of America.

[2]  S. Tonegawa.  Somatic generation of antibody diversity , 1983, Nature.

[3]  S. Tonegawa,et al.  Somatic generation of antibody diversity. , 1976, Nature.

[4]  L. Hood,et al.  The molecular genetics of the T-cell antigen receptor and T-cell antigen recognition. , 1986, Annual review of immunology.

[5]  Bernard Malissen,et al.  Characterization of T cell repertoire changes in acute Kawasaki disease , 1993, The Journal of experimental medicine.

[6]  A. Houghton.  Cancer antigens: immune recognition of self and altered self , 1994, The Journal of experimental medicine.

[7]  H. Petrie,et al.  T cell receptor gene recombination patterns and mechanisms: cell death, rescue, and T cell production , 1995, The Journal of experimental medicine.

[8]  A. Mellor,et al.  Alternative splicing and hypermutation of a nonproductively rearranged TCR alpha-chain in a T cell hybridoma. , 1999, Journal of immunology.

[9]  V. Giudicelli,et al.  IMGT unique numbering for immunoglobulin and T cell receptor variable domains and Ig superfamily V-like domains. , 2003, Developmental and comparative immunology.

[10]  C. Weyand,et al.  Ageing, autoimmunity and arthritis: T-cell senescence and contraction of T-cell repertoire diversity – catalysts of autoimmunity and chronic inflammation , 2003, Arthritis research & therapy.

[11]  Mathieu Rouard,et al.  IMGT unique numbering for immunoglobulin and T cell receptor constant domains and Ig superfamily C-like domains. , 2005, Developmental and comparative immunology.

[12]  C. Grimaldi,et al.  B Cell Selection and Susceptibility to Autoimmunity , 2005, The Journal of Immunology.

[13]  Thomas B. Kepler,et al.  SoDA: implementation of a 3D alignment algorithm for inference of antigen receptor recombinations , 2006, Bioinform..

[14]  Patrick Wilson,et al.  iHMMune-align: hidden Markov model-based alignment and identification of germline genes in rearranged immunoglobulin gene sequences , 2007, Bioinform..

[15]  Marie-Paule Lefranc,et al.  IMGT/V-QUEST: the highly customized and integrated system for IG and TR standardized V-J and V-D-J sequence analysis , 2008, Nucleic Acids Res..

[16]  Ann-Christine Syvänen,et al.  Next-generation sequencing technologies and applications for human genetic history and forensics , 2011, Investigative Genetics.

[17]  Lin Liu,et al.  Comparison of Next-Generation Sequencing Systems , 2012, Journal of biomedicine & biotechnology.

[18]  C. Mauri,et al.  Immune regulatory function of B cells. , 2012, Annual review of immunology.

[19]  Thomas B Kepler,et al.  Reconstructing a B-cell clonal lineage. I. Statistical inference of unobserved ancestors , 2013, F1000Research.

[20]  Gregory W. Schwartz,et al.  Germline Amino Acid Diversity in B Cell Receptors is a Good Predictor of Somatic Selection Pressures , 2013, Front. Immunol..

[21]  Simona Soverini,et al.  Comparison of Next-Generation Sequencing Systems , 2013 .

[22]  Ning Ma,et al.  IgBLAST: an immunoglobulin variable domain sequence analysis tool , 2013, Nucleic Acids Res..

[23]  Uri Hershberg,et al.  Conserved variation: identifying patterns of stability and variability in BCR and TCR V genes with different diversity and richness metrics , 2013, Physical biology.

[24]  Steven H. Kleinstein,et al.  B cells populating the multiple sclerosis brain mature in the draining cervical lymph nodes , 2014, Science Translational Medicine.

[25]  Uri Hershberg,et al.  Persistence and selection of an expanded B-cell clone in the setting of rituximab therapy for Sjögren’s syndrome , 2014, Arthritis Research & Therapy.

[26]  Gregory W. Schwartz,et al.  Trials and Tribulations with VH Replacement , 2014, Front. Immunol..

[27]  Eline T. Luning Prak,et al.  The analysis of clonal expansions in normal and autoimmune B cell repertoires , 2015, Philosophical Transactions of the Royal Society B: Biological Sciences.