Genome reduction and potential metabolic complementation of the dual endosymbionts in the whitefly Bemisia tabaci
暂无分享,去创建一个
Marie-France Sagot | Andrés Moya | Amparo Latorre | Pierre-Antoine Rollat-Farnier | Qiong Rao | A. Moya | M. Sagot | A. Latorre | C. Klein | Francisco J. Silva | F. Vavre | Xiaowei Wang | Shu-Sheng Liu | D. Santos-García | P. Rollat-Farnier | L. Mouton | Francisco J Silva | Fabrice Vavre | Shu-Sheng Liu | Q. Rao | Dan-Tong Zhu | Diego Santos-Garcia | Cecilia C Klein | Laurence Mouton | Xiao-Wei Wang | D. Santos‐García | Dan-Tong Zhu
[1] A. Moya,et al. Complete Genome Sequence of “Candidatus Portiera aleyrodidarum” BT-QVLC, an Obligate Symbiont That Supplies Amino Acids and Carotenoids to Bemisia tabaci , 2012, Journal of bacteriology.
[2] N. Moran,et al. Genomics and evolution of heritable bacterial symbionts. , 2008, Annual review of genetics.
[3] M. Ghanim,et al. Horizontal transmission of begomoviruses between Bemisia tabaci biotypes , 2007, Arthropod-Plant Interactions.
[4] Jürgen Gadau,et al. The genome sequence of Blochmannia floridanus: Comparative analysis of reduced genomes , 2003, Proceedings of the National Academy of Sciences of the United States of America.
[5] Cloning and sequencing of a gene encoding a glutamate and aspartate carrier of Escherichia coli K-12 , 1990, Journal of bacteriology.
[6] A. Moya,et al. Evolutionary Convergence and Nitrogen Metabolism in Blattabacterium strain Bge, Primary Endosymbiont of the Cockroach Blattella germanica , 2009, PLoS genetics.
[7] P. J. Barro,et al. Use of RAPD PCR to Distinguish the B Biotype from Other Biotypes of Bemisia tabaci (Gennadius) (Hemiptera: Aleyrodidae) , 1997 .
[8] Daniel B. Sloan,et al. Parallel histories of horizontal gene transfer facilitated extreme reduction of endosymbiont genomes in sap-feeding insects. , 2014, Molecular biology and evolution.
[9] Manuel Porcar,et al. Mealybugs nested endosymbiosis: going into the ‘matryoshka’ system in Planococcus citri in depth , 2013, BMC Microbiology.
[10] Hajime Ishikawa,et al. The 160-Kilobase Genome of the Bacterial Endosymbiont Carsonella , 2006, Science.
[11] Xiaoli Bing,et al. Diversity of secondary endosymbionts among different putative species of the whitefly Bemisia tabaci , 2013, Insect science.
[12] Joshua P. White,et al. Independent origins and horizontal transfer of bacterial symbionts of aphids , 2001, Molecular ecology.
[13] Xiaoli Bing,et al. Draft Genome Sequence of “Candidatus Hamiltonella defensa,” an Endosymbiont of the Whitefly Bemisia tabaci , 2012, Journal of bacteriology.
[14] D. Gerling,et al. Identification and Localization of a Rickettsia sp. in Bemisia tabaci (Homoptera: Aleyrodidae) , 2006, Applied and Environmental Microbiology.
[15] M. Ghanim,et al. Endosymbiont metacommunities, mtDNA diversity and the evolution of the Bemisia tabaci (Hemiptera: Aleyrodidae) species complex , 2010, Molecular ecology.
[16] Daniel B. Sloan,et al. The Evolution of Genomic Instability in the Obligate Endosymbionts of Whiteflies , 2013, Genome biology and evolution.
[17] S. Colella,et al. Genomic insight into the amino acid relations of the pea aphid, Acyrthosiphon pisum, with its symbiotic bacterium Buchnera aphidicola , 2010, Insect molecular biology.
[18] J. Brown,et al. Diversity of Prokaryotes Associated with Bemisia tabaci (Gennadius) (Hemiptera: Aleyrodidae) , 2002 .
[19] Xiaoli Bing,et al. Characterization of a Newly Discovered Symbiont of the Whitefly Bemisia tabaci (Hemiptera: Aleyrodidae) , 2012, Applied and Environmental Microbiology.
[20] Kipp W. Johnson,et al. Genome Sequences of the Primary Endosymbiont “Candidatus Portiera aleyrodidarum” in the Whitefly Bemisia tabaci B and Q Biotypes , 2012, Journal of bacteriology.
[21] P. D. De Barro,et al. An Extensive Field Survey Combined with a Phylogenetic Analysis Reveals Rapid and Widespread Invasion of Two Alien Whiteflies in China , 2011, PloS one.
[22] A. Douglas,et al. Nutritional interactions in insect-microbial symbioses: aphids and their symbiotic bacteria Buchnera. , 1998, Annual review of entomology.
[23] D. Gerling,et al. Parasitization by the wasp Eretmocerus mundus induces transcription of genes related to immune response and symbiotic bacteria proliferation in the whitefly Bemisia tabaci , 2008, BMC Genomics.
[24] Ling V. Sun,et al. Phylogenomics of the Reproductive Parasite Wolbachia pipientis wMel: A Streamlined Genome Overrun by Mobile Genetic Elements , 2004, PLoS biology.
[25] M. Feldman,et al. Large-scale reconstruction and phylogenetic analysis of metabolic environments , 2008, Proceedings of the National Academy of Sciences.
[26] J. McCutcheon,et al. Horizontal Gene Transfer from Diverse Bacteria to an Insect Genome Enables a Tripartite Nested Mealybug Symbiosis , 2013, Cell.
[27] Gábor Csárdi,et al. The igraph software package for complex network research , 2006 .
[28] J. Gowrishankar,et al. Evidence for an Arginine Exporter Encoded by yggA (argO) That Is Regulated by the LysR-Type Transcriptional Regulator ArgP in Escherichia coli , 2004, Journal of bacteriology.
[29] M. Ghanim,et al. Inherited intracellular ecosystem: symbiotic bacteria share bacteriocytes in whiteflies , 2008, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.
[30] Jean-Michel Claverie,et al. Genome Sequence of Rickettsia bellii Illuminates the Role of Amoebae in Gene Exchanges between Intracellular Pathogens , 2006, PLoS genetics.
[31] P. Baumann,et al. Evolutionary Relationships of Primary Prokaryotic Endosymbionts of Whiteflies and Their Hosts , 2004, Applied and Environmental Microbiology.
[32] Y. Buckley,et al. Refined Global Analysis of Bemisia tabaci (Hemiptera: Sternorrhyncha: Aleyrodoidea: Aleyrodidae) Mitochondrial Cytochrome Oxidase 1 to Identify Species Level Genetic Boundaries , 2010 .
[33] Daniel B. Sloan,et al. Endosymbiotic bacteria as a source of carotenoids in whiteflies , 2012, Biology Letters.
[34] S. Colella,et al. A Genomic Reappraisal of Symbiotic Function in the Aphid/Buchnera Symbiosis: Reduced Transporter Sets and Variable Membrane Organisations , 2011, PloS one.
[35] G. Devine,et al. Characterisation of Neonicotinoid and Pymetrozine Resistance in Strains of Bemisia tabaci(Hemiptera:Aleyrodidae)from China , 2012 .
[36] Peter Schattner,et al. The tRNAscan-SE, snoscan and snoGPS web servers for the detection of tRNAs and snoRNAs , 2005, Nucleic Acids Res..
[37] D. Lipman,et al. A genomic perspective on protein families. , 1997, Science.
[38] Peter D. Newell,et al. Shared Metabolic Pathways in a Coevolved Insect-Bacterial Symbiosis , 2013, Applied and Environmental Microbiology.
[39] Chuan-Xi Zhang,et al. De novo characterization of a whitefly transcriptome and analysis of its gene expression during development , 2010, BMC Genomics.
[40] Francisco J. Silva,et al. Differential annotation of tRNA genes with anticodon CAT in bacterial genomes , 2006, Nucleic acids research.
[41] Ivica Tamas,et al. Endosymbiont gene functions impaired and rescued by polymerase infidelity at poly(A) tracts , 2008, Proceedings of the National Academy of Sciences.
[42] Michael P. Barrett,et al. MetExplore: a web server to link metabolomic experiments and genome-scale metabolic networks , 2010, Nucleic Acids Res..
[43] F. Vavre,et al. Interactions between vertically transmitted symbionts: cooperation or conflict? , 2009, Trends in microbiology.
[44] Masahira Hattori,et al. Massive genome erosion and functional adaptations provide insights into the symbiotic lifestyle of Sodalis glossinidius in the tsetse host. , 2005, Genome research.
[45] A. Moya,et al. Learning how to live together: genomic insights into prokaryote–animal symbioses , 2008, Nature Reviews Genetics.
[46] Akiyasu C. Yoshizawa,et al. KAAS: an automatic genome annotation and pathway reconstruction server , 2007, Environmental health perspectives.
[47] M. Ghanim,et al. Susceptibility to insecticides in the Q biotype of Bemisia tabaci is correlated with bacterial symbiont densities. , 2009, Pest management science.
[48] L. Boykin,et al. Bemisia tabaci: a statement of species status. , 2011, Annual review of entomology.
[49] Kostas Bourtzis,et al. Manipulative tenants : bacteria associated with arthropods , 2011 .
[50] N. Moran,et al. Hamiltonella defensa, genome evolution of protective bacterial endosymbiont from pathogenic ancestors , 2009, Proceedings of the National Academy of Sciences.
[51] N. Moran,et al. Lateral Transfer of Genes from Fungi Underlies Carotenoid Production in Aphids , 2010, Science.
[52] V. Martin,et al. Genetic Investigation of the Catabolic Pathway for Degradation of Abietane Diterpenoids by Pseudomonas abietaniphilaBKME-9 , 2000, Journal of bacteriology.
[53] Daniel B. Sloan,et al. Genome reduction and co-evolution between the primary and secondary bacterial symbionts of psyllids. , 2012, Molecular biology and evolution.
[54] Emmanuelle Lerat,et al. Recognizing the pseudogenes in bacterial genomes , 2005, Nucleic acids research.
[55] N. W. Davis,et al. The complete genome sequence of Escherichia coli K-12. , 1997, Science.
[56] A. Moya,et al. Serratia symbiotica from the Aphid Cinara cedri: A Missing Link from Facultative to Obligate Insect Endosymbiont , 2011, PLoS genetics.
[57] N. Moran,et al. Origin of an Alternative Genetic Code in the Extremely Small and GC–Rich Genome of a Bacterial Symbiont , 2009, PLoS genetics.
[58] A. Wilson,et al. Aphid amino acid transporter regulates glutamine supply to intracellular bacterial symbionts , 2013, Proceedings of the National Academy of Sciences.
[59] Thomas Dandekar,et al. Metabolic Interdependence of Obligate Intracellular Bacteria and Their Insect Hosts , 2004, Microbiology and Molecular Biology Reviews.
[60] J. Werren,et al. Characteristics of the genome of Arsenophonus nasoniae, son‐killer bacterium of the wasp Nasonia , 2010, Insect molecular biology.
[61] G. Devine,et al. Distribution and dynamics of Bemisia tabaci invasive biotypes in central China , 2010, Bulletin of Entomological Research.
[62] N. Moran,et al. Small, Smaller, Smallest: The Origins and Evolution of Ancient Dual Symbioses in a Phloem-Feeding Insect , 2013, Genome biology and evolution.
[63] Leen Stougie,et al. Graph-Based Analysis of the Metabolic Exchanges between Two Co-Resident Intracellular Symbionts, Baumannia cicadellinicola and Sulcia muelleri, with Their Insect Host, Homalodisca coagulata , 2010, PLoS Comput. Biol..
[64] S. Génieys,et al. Do vertically transmitted symbionts co‐existing in a single host compete or cooperate? A modelling approach , 2008, Journal of evolutionary biology.
[65] N. Moran,et al. Functional Convergence in Reduced Genomes of Bacterial Symbionts Spanning 200 My of Evolution , 2010, Genome biology and evolution.
[66] M. Hattori,et al. Genome sequence of the endocellular bacterial symbiont of aphids Buchnera sp. APS , 2000, Nature.
[67] Trey Ideker,et al. Cytoscape 2.8: new features for data integration and network visualization , 2010, Bioinform..
[68] A. Douglas. Phloem-sap feeding by animals: problems and solutions. , 2006, Journal of experimental botany.
[69] M. Ghanim,et al. Rickettsia influences thermotolerance in the whitefly Bemisia tabaci B biotype , 2011 .
[70] P. Kittayapong,et al. Closely Related Wolbachia Strains within the Pumpkin Arthropod Community and the Potential for Horizontal Transmission via the Plant , 2006, Microbial Ecology.
[71] M. Inbar,et al. Almost There: Transmission Routes of Bacterial Symbionts between Trophic Levels , 2009, PloS one.
[72] F. Vavre,et al. Bacterial symbionts in insects or the story of communities affecting communities , 2011, Philosophical Transactions of the Royal Society B: Biological Sciences.
[73] E. Bongcam-Rudloff,et al. Complete genome sequence of a plant associated bacterium Bacillus amyloliquefaciens subsp. plantarum UCMB5033 , 2014, Standards in genomic sciences.
[74] N. Moran,et al. The nutrient supplying capabilities of Uzinura, an endosymbiont of armoured scale insects. , 2013, Environmental microbiology.
[75] P. Baumann. Biology bacteriocyte-associated endosymbionts of plant sap-sucking insects. , 2005, Annual review of microbiology.
[76] N. Moran,et al. Evolutionary Relationships of Three New Species of Enterobacteriaceae Living as Symbionts of Aphids and Other Insects , 2005, Applied and Environmental Microbiology.
[77] Ian T. Paulsen,et al. Comparative Analyses of Fundamental Differences in Membrane Transport Capabilities in Prokaryotes and Eukaryotes , 2005, PLoS Comput. Biol..
[78] N. Moran,et al. Convergent evolution of metabolic roles in bacterial co-symbionts of insects , 2009, Proceedings of the National Academy of Sciences.
[79] J. McCutcheon,et al. An Interdependent Metabolic Patchwork in the Nested Symbiosis of Mealybugs , 2011, Current Biology.
[80] Peter D. Karp,et al. The Pathway Tools software , 2002, ISMB.
[81] Phat L Tran,et al. Metabolic Complementarity and Genomics of the Dual Bacterial Symbiosis of Sharpshooters , 2006, PLoS biology.
[82] N. Moran,et al. Parallel genomic evolution and metabolic interdependence in an ancient symbiosis , 2007, Proceedings of the National Academy of Sciences.
[83] H. Doddapaneni,et al. The Complete Genome Sequence of ‘Candidatus Liberibacter solanacearum’, the Bacterium Associated with Potato Zebra Chip Disease , 2011, PloS one.
[84] P. Degnan,et al. Genome sequence of Blochmannia pennsylvanicus indicates parallel evolutionary trends among bacterial mutualists of insects. , 2005, Genome research.
[85] N. Moran,et al. The impact of microbial symbionts on host plant utilization by herbivorous insects , 2014, Molecular ecology.
[86] Shaoli Wang,et al. The Endosymbiont Hamiltonella Increases the Growth Rate of Its Host Bemisia tabaci during Periods of Nutritional Stress , 2014, PloS one.
[87] Andrés Moya,et al. A Small Microbial Genome: The End of a Long Symbiotic Relationship? , 2006, Science.
[88] Peter F. Hallin,et al. RNAmmer: consistent and rapid annotation of ribosomal RNA genes , 2007, Nucleic acids research.
[89] Wendy S. Schackwitz,et al. One Bacterial Cell, One Complete Genome , 2010, PloS one.
[90] Moriya Ohkuma,et al. Defensive Bacteriome Symbiont with a Drastically Reduced Genome , 2013, Current Biology.