Integration of UAV, Sentinel-1, and Sentinel-2 Data for Mangrove Plantation Aboveground Biomass Monitoring in Senegal

Due to the increasing importance of mangroves in climate change mitigation projects, more accurate and cost-effective aboveground biomass (AGB) monitoring methods are required. However, field measurements of AGB may be a challenge because of their remote location and the difficulty to walk in these areas. This study is based on the Livelihoods Fund Oceanium project that monitors 10,000 ha of mangrove plantations. In a first step, the possibility of replacing traditional field measurements of sample plots in a young mangrove plantation by a semiautomatic processing of UAV-based photogrammetric point clouds was assessed. In a second step, Sentinel-1 radar and Sentinel-2 optical imagery were used as auxiliary information to estimate AGB and its variance for the entire study area under a model-assisted framework. AGB was measured using UAV imagery in a total of 95 sample plots. UAV plot data was used in combination with non-parametric support vector regression (SVR) models for the estimation of the study area AGB using model-assisted estimators. Purely UAV-based AGB estimates and their associated standard error (SE) were compared with model-assisted estimates using (1) Sentinel-1, (2) Sentinel-2, and (3) a combination of Sentinel-1 and Sentinel-2 data as auxiliary information. The validation of the UAV-based individual tree height and crown diameter measurements showed a root mean square error (RMSE) of 0.21 m and 0.32 m, respectively. Relative efficiency of the three model-assisted scenarios ranged between 1.61 and 2.15. Although all SVR models improved the efficiency of the monitoring over UAV-based estimates, the best results were achieved when a combination of Sentinel-1 and Sentinel-2 data was used. Results indicated that the methodology used in this research can provide accurate and cost-effective estimates of AGB in young mangrove plantations.

[1]  Jorge García-Gutiérrez,et al.  A Comparison of Machine Learning Techniques Applied to Landsat-5 TM Spectral Data for Biomass Estimation , 2016 .

[2]  I. Woodhouse,et al.  Structure from Motion (SfM) Photogrammetry with Drone Data: A Low Cost Method for Monitoring Greenhouse Gas Emissions from Forests in Developing Countries , 2017 .

[3]  Randolph H. Wynne,et al.  Estimating plot-level tree heights with lidar : local filtering with a canopy-height based variable window size , 2002 .

[4]  Malcolm Davidson,et al.  GMES Sentinel-1 mission , 2012 .

[5]  Terje Gobakken,et al.  Inventory of Small Forest Areas Using an Unmanned Aerial System , 2015, Remote. Sens..

[6]  C. Silva,et al.  Individual tree detection from Unmanned Aerial Vehicle (UAV) derived canopy height model in an open canopy mixed conifer forest , 2017 .

[7]  Steffen Gebhardt,et al.  Remote Sensing of Mangrove Ecosystems: A Review , 2011, Remote. Sens..

[8]  Lin Liu,et al.  Object-Based Mangrove Species Classification Using Unmanned Aerial Vehicle Hyperspectral Images and Digital Surface Models , 2018, Remote. Sens..

[9]  Dieu Tien Bui,et al.  Improving Accuracy Estimation of Forest Aboveground Biomass Based on Incorporation of ALOS-2 PALSAR-2 and Sentinel-2A Imagery and Machine Learning: A Case Study of the Hyrcanian Forest Area (Iran) , 2018, Remote. Sens..

[10]  Zhenfeng Shao,et al.  Estimating Forest Aboveground Biomass by Combining Optical and SAR Data: A Case Study in Genhe, Inner Mongolia, China , 2016, Sensors.

[11]  Jungho Im,et al.  Forest biomass estimation from airborne LiDAR data using machine learning approaches , 2012 .

[12]  U. Avdan,et al.  Estimating tree heights with images from an unmanned aerial vehicle , 2017 .

[13]  I. Mohd Hasmadi,et al.  L-band ALOS PALSAR for biomass estimation of Matang Mangroves, Malaysia , 2014 .

[14]  Creation of a Canopy Height Model from mini-UAV Imagery , 2012 .

[15]  Terje Gobakken,et al.  The effects of field plot size on model-assisted estimation of aboveground biomass change using multitemporal interferometric SAR and airborne laser scanning data , 2015 .

[16]  Peter Regner,et al.  SNAP (Sentinel Application Platform) and the ESA Sentinel 3 Toolbox , 2015 .

[17]  S. Thiria,et al.  Weather regimes over Senegal during the summer monsoon season using self-organizing maps and hierarchical ascendant classification. Part I: synoptic time scale , 2011 .

[18]  Anthony M. Filippi,et al.  stimation of floodplain aboveground biomass using multispectral emote sensing and nonparametric modeling , 2014 .

[19]  Keqi Zhang,et al.  Mapping Height and Biomass of Mangrove Forests in Everglades National Park with SRTM Elevation Data , 2006 .

[20]  Dibyendu Dutta,et al.  Assessment of ecological disturbance in the mangrove forest of Sundarbans caused by cyclones using MODIS time-series data (2001–2011) , 2015, Natural Hazards.

[21]  D. Pitt,et al.  A Comparison of Airborne Laser Scanning and Image Point Cloud Derived Tree Size Class Distribution Models in Boreal Ontario , 2015 .

[22]  R. Valentini,et al.  Above ground biomass estimation in an African tropical forest with lidar and hyperspectral data , 2014 .

[23]  S. Magnussen,et al.  Model-calibrated k-nearest neighbor estimators , 2016 .

[24]  Chen Shi,et al.  Comparison of UAV and WorldView-2 imagery for mapping leaf area index of mangrove forest , 2017, Int. J. Appl. Earth Obs. Geoinformation.

[25]  Seung-Kuk Lee,et al.  Estimating Mangrove Canopy Height and Above-Ground Biomass in the Everglades National Park with Airborne LiDAR and TanDEM-X Data , 2017, Remote. Sens..

[26]  Fabio Remondino,et al.  State of the art in high density image matching , 2014 .

[27]  C. Proisy,et al.  On the influence of canopy structure on the radar backscattering of mangrove forests , 2002 .

[28]  Jorge Torres-Sánchez,et al.  High-Throughput 3-D Monitoring of Agricultural-Tree Plantations with Unmanned Aerial Vehicle (UAV) Technology , 2015, PloS one.

[29]  S. Robeson,et al.  Mapping spatial distribution and biomass of coastal wetland vegetation in Indonesian Papua by combining active and passive remotely sensed data , 2016 .

[30]  Peng Gong,et al.  3D Model-Based Tree Measurement from High-Resolution Aerial Imagery , 2002 .

[31]  E. Næsset,et al.  Combining UAV and Sentinel-2 auxiliary data for forest growing stock volume estimation through hierarchical model-based inference , 2018 .

[32]  Batuhan Osmanoglu,et al.  Large-scale mangrove canopy height map generation from TanDEM-X data by means of Pol-InSAR techniques , 2015, 2015 IEEE International Geoscience and Remote Sensing Symposium (IGARSS).

[33]  R. Lucas,et al.  Managing mangrove forests from the sky: Forest inventory using field data and Unmanned Aerial Vehicle (UAV) imagery in the Matang Mangrove Forest Reserve, peninsular Malaysia , 2018 .

[34]  Eduardo González-Ferreiro,et al.  Short Communication. Using high resolution UAV imagery to estimate tree variables in Pinus pinea plantation in Portugal , 2016 .

[35]  Jean-Michel Poggi,et al.  VSURF: An R Package for Variable Selection Using Random Forests , 2015, R J..

[36]  M. Downey,et al.  SEMI-GLOBAL MATCHING : AN ALTERNATIVE TO LIDAR FOR DSM GENERATION ? , 2010 .

[37]  Andy Liaw,et al.  Classification and Regression by randomForest , 2007 .

[38]  S. Popescu,et al.  Seeing the Trees in the Forest: Using Lidar and Multispectral Data Fusion with Local Filtering and Variable Window Size for Estimating Tree Height , 2004 .

[39]  Thuy Le Toan,et al.  Relating forest biomass to SAR data , 1992, IEEE Trans. Geosci. Remote. Sens..

[40]  H. Shugart,et al.  Landscape‐scale extent, height, biomass, and carbon estimation of Mozambique's mangrove forests with Landsat ETM+ and Shuttle Radar Topography Mission elevation data , 2008 .

[41]  J. Barlow,et al.  The cost-effectiveness of biodiversity surveys in tropical forests. , 2008, Ecology letters.

[42]  D. Lu The potential and challenge of remote sensing‐based biomass estimation , 2006 .

[43]  P. Surový,et al.  Determining tree height and crown diameter from high-resolution UAV imagery , 2017 .

[44]  Joanne C. White,et al.  The Utility of Image-Based Point Clouds for Forest Inventory: A Comparison with Airborne Laser Scanning , 2013 .

[45]  Chris J. Kennedy,et al.  The value of estuarine and coastal ecosystem services , 2011 .

[46]  R. Lucas,et al.  Spatial ecology of mangrove forests: a remote sensing perspective , 2017 .

[47]  Source and stability of soil carbon in mangrove and freshwater wetlands of the Mexican Pacific coast , 2016, Wetlands Ecology and Management.

[48]  Leo Breiman,et al.  Random Forests , 2001, Machine Learning.

[49]  Karen Anderson,et al.  Lightweight unmanned aerial vehicles will revolutionize spatial ecology , 2013 .

[50]  Göran Ståhl,et al.  Model-assisted regional forest biomass estimation using LiDAR and InSAR as auxiliary data: A case study from a boreal forest area , 2011 .

[51]  D. Alongi Carbon sequestration in mangrove forests , 2012 .

[52]  Daniel A. Friess,et al.  Mangrove biomass estimation in Southwest Thailand using machine learning , 2013 .

[53]  D. Pitt,et al.  A Comparison of Point Clouds Derived from Stereo Imagery and Airborne Laser Scanning for the Area-Based Estimation of Forest Inventory Attributes in Boreal Ontario , 2014 .

[54]  Masanobu Shimada,et al.  An Evaluation of the ALOS PALSAR L-Band Backscatter—Above Ground Biomass Relationship Queensland, Australia: Impacts of Surface Moisture Condition and Vegetation Structure , 2010, IEEE Journal of Selected Topics in Applied Earth Observations and Remote Sensing.

[55]  Pablo J. Zarco-Tejada,et al.  Tree height quantification using very high resolution imagery acquired from an unmanned aerial vehicle (UAV) and automatic 3D photo-reconstruction methods , 2014 .

[56]  Joanne C. White,et al.  Airborne laser scanning and digital stereo imagery measures of forest structure: comparative results and implications to forest mapping and inventory update , 2013 .

[57]  Wang Tao,et al.  Dense point cloud extraction from UAV captured images in forest area , 2011, Proceedings 2011 IEEE International Conference on Spatial Data Mining and Geographical Knowledge Services.

[58]  Cyrus Samimi,et al.  Disturbance feedbacks on the height of woody vegetation in a savannah: a multi-plot assessment using an unmanned aerial vehicle (UAV) , 2018 .

[59]  Dario Papale,et al.  Above-ground biomass prediction by Sentinel-1 multitemporal data in central Italy with integration of ALOS2 and Sentinel-2 data , 2018 .

[60]  P. Surový,et al.  Estimation of positions and heights from UAV-sensed imagery in tree plantations in agrosilvopastoral systems , 2018 .

[61]  O. Mutanga,et al.  Examining the potential of Sentinel-2 MSI spectral resolution in quantifying above ground biomass across different fertilizer treatments , 2015 .

[62]  S. Thiria,et al.  Weather regimes over Senegal during the summer monsoon season using self-organizing maps and hierarchical ascendant classification. Part II: interannual time scale , 2012, Climate Dynamics.

[63]  Seung-Kuk Lee,et al.  TanDEM-X Pol-InSAR Inversion for Mangrove Canopy Height Estimation , 2015, IEEE Journal of Selected Topics in Applied Earth Observations and Remote Sensing.

[64]  Mahendra Singh Nathawat,et al.  A review of radar remote sensing for biomass estimation , 2015, International Journal of Environmental Science and Technology.

[65]  Sandra Englhart,et al.  Modeling Aboveground Biomass in Tropical Forests Using Multi-Frequency SAR Data—A Comparison of Methods , 2012, IEEE Journal of Selected Topics in Applied Earth Observations and Remote Sensing.

[66]  Masayuki Itoh,et al.  Estimating Tree Height and Diameter at Breast Height (DBH) from Digital Surface Models and Orthophotos Obtained with an Unmanned Aerial System for a Japanese Cypress (Chamaecyparis obtusa) Forest , 2017, Remote. Sens..

[67]  Adam J. Mathews,et al.  Assessment of Image-Based Point Cloud Products to Generate a Bare Earth Surface and Estimate Canopy Heights in a Woodland Ecosystem , 2016, Remote. Sens..

[68]  Tristan R. H. Goodbody,et al.  Assessing the status of forest regeneration using digital aerial photogrammetry and unmanned aerial systems , 2018 .

[69]  Ashbindu Singh,et al.  Status and distribution of mangrove forests of the world using earth observation satellite data , 2011 .

[70]  Bernhard Schölkopf,et al.  A tutorial on support vector regression , 2004, Stat. Comput..

[71]  Ronald E. McRoberts,et al.  Effects of uncertainty in model predictions of individual tree volume on large area volume estimates , 2014 .

[72]  Vladimir Vapnik,et al.  The Nature of Statistical Learning , 1995 .

[73]  Peter Dalgaard,et al.  R Development Core Team (2010): R: A language and environment for statistical computing , 2010 .

[74]  Dieu Tien Bui,et al.  Estimating aboveground biomass of a mangrove plantation on the Northern coast of Vietnam using machine learning techniques with an integration of ALOS-2 PALSAR-2 and Sentinel-2A data , 2018 .

[75]  R. McGaughey AND OTHER DATA USING 2 D AND 3 D VISUALIZATION TECHNIQUES , 2003 .

[76]  M. Pierrot-Deseilligny,et al.  A Photogrammetric Workflow for the Creation of a Forest Canopy Height Model from Small Unmanned Aerial System Imagery , 2013 .

[77]  D. Passoni,et al.  AERIAL IMAGES FROM AN UAV SYSTEM: 3D MODELING AND TREE SPECIES CLASSIFICATION IN A PARK AREA , 2012 .

[78]  Severino G. Salmo,et al.  Estimation and mapping of above-ground biomass of mangrove forests and their replacement land uses in the Philippines using Sentinel imagery , 2017 .

[79]  Melanie Stidham,et al.  Carbon storage in mangrove and peatland ecosystems: a preliminary account from plots in Indonesia , 2009 .

[80]  S. Magnussen,et al.  Sampling Methods, Remote Sensing and GIS Multiresource Forest Inventory , 2006 .

[81]  Andrew M. Cunliffe,et al.  Ultra-fine grain landscape-scale quantification of dryland vegetation structure with drone-acquired structure-from-motion photogrammetry , 2016 .

[82]  Temilola Fatoyinbo,et al.  Estimating mangrove aboveground biomass from airborne LiDAR data: a case study from the Zambezi River delta , 2018 .

[83]  Göran Ståhl,et al.  Use of models in large-area forest surveys: comparing model-assisted, model-based and hybrid estimation , 2016, Forest Ecosystems.

[84]  M. Kanninen,et al.  Mangroves among the most carbon-rich forests in the tropics , 2011 .

[85]  Piermaria Corona,et al.  Design-based diagnostics for k-NN estimators of forest resourcesThis article is one of a selection of papers from Extending Forest Inventory and Monitoring over Space and Time. , 2011 .

[86]  D. Kuria,et al.  Estimation of Tree Distribution and Canopy Heights in Ifakara, Tanzania Using Unmanned Aerial System (UAS) Stereo Imagery , 2017 .

[87]  Dieu Tien Bui,et al.  Biomass estimation of Sonneratia caseolaris (l.) Engler at a coastal area of Hai Phong city (Vietnam) using ALOS-2 PALSAR imagery and GIS-based multi-layer perceptron neural networks , 2017 .

[88]  Nathan Torbick,et al.  Assessment of Forest above Ground Biomass Estimation Using Multi-Temporal C-band Sentinel-1 and Polarimetric L-band PALSAR-2 Data , 2018, Remote. Sens..

[89]  Stuart R. Phinn,et al.  Characterizing the Spatial Structure of Mangrove Features for Optimizing Image-Based Mangrove Mapping , 2014, Remote. Sens..

[90]  Aurélie C. Shapiro,et al.  The Mangroves of the Zambezi Delta: Increase in Extent Observed via Satellite from 1994 to 2013 , 2015, Remote. Sens..

[91]  Temilola Fatoyinbo,et al.  A Comparison of Mangrove Canopy Height Using Multiple Independent Measurements from Land, Air, and Space , 2016, Remote. Sens..

[92]  Göran Ståhl,et al.  Model-assisted estimation of biomass in a LiDAR sample survey in Hedmark County, NorwayThis article is one of a selection of papers from Extending Forest Inventory and Monitoring over Space and Time. , 2011 .

[93]  R. McRoberts,et al.  Using the regression estimator with Landsat data to estimate proportion forest cover and net proportion deforestation in Gabon , 2014 .

[94]  Erle C. Ellis,et al.  High spatial resolution three-dimensional mapping of vegetation spectral dynamics using computer vision , 2013 .