The Generation and Exploitation of Protein Mutability Landscapes for Enzyme Engineering
暂无分享,去创建一个
Lieuwe Biewenga | G. Poelarends | Jan‐Ytzen van der Meer | Lieuwe Biewenga | Jan‐Ytzen van der Meer | Gerrit J. Poelarends
[1] J. Pérez-pons,et al. A beta-glucosidase gene (bgl3) from Streptomyces sp. strain QM-B814. Molecular cloning, nucleotide sequence, purification and characterization of the encoded enzyme, a new member of family 1 glycosyl hydrolases. , 1994, European journal of biochemistry.
[2] Roberto A Chica,et al. Semi-rational approaches to engineering enzyme activity: combining the benefits of directed evolution and rational design. , 2005, Current opinion in biotechnology.
[3] S. Pomeroy,et al. UBE4B promotes Hdm2-mediated degradation of the tumor suppressor p53 , 2011, Nature Medicine.
[4] Timothy A. Whitehead,et al. Optimization of affinity, specificity and function of designed influenza inhibitors using deep sequencing , 2012, Nature Biotechnology.
[5] Y. Miao,et al. Biocatalytic Michael-type additions of acetaldehyde to nitroolefins with the proline-based enzyme 4-oxalocrotonate tautomerase yielding enantioenriched γ-nitroaldehydes. , 2013, Chemistry.
[6] Karl-Erich Jaeger,et al. Exploring the Protein Stability Landscape: Bacillus subtilis Lipase A as a Model for Detergent Tolerance , 2015, Chembiochem : a European journal of chemical biology.
[7] Dan S. Tawfik,et al. Enzyme promiscuity: a mechanistic and evolutionary perspective. , 2010, Annual review of biochemistry.
[8] Manfred T Reetz,et al. Directed evolution of enantioselective enzymes: iterative cycles of CASTing for probing protein-sequence space. , 2006, Angewandte Chemie.
[9] Joseph B Hiatt,et al. Activity-enhancing mutations in an E3 ubiquitin ligase identified by high-throughput mutagenesis , 2013, Proceedings of the National Academy of Sciences.
[10] F. Arnold,et al. Directed Evolution Library Creation , 2003 .
[11] Nicholas J Turner,et al. Directed evolution drives the next generation of biocatalysts. , 2009, Nature chemical biology.
[12] Y. Miao,et al. Promiscuous Catalysis of Asymmetric Michael‐Type Additions of Linear Aldehydes to β‐Nitrostyrene by the Proline‐Based Enzyme 4‐Oxalocrotonate Tautomerase , 2013, Chembiochem : a European journal of chemical biology.
[13] Bert-Jan Baas,et al. Recent Advances in the Study of Enzyme Promiscuity in the Tautomerase Superfamily , 2013, Chembiochem : a European journal of chemical biology.
[14] Jing Hu,et al. SIFT web server: predicting effects of amino acid substitutions on proteins , 2012, Nucleic Acids Res..
[15] Wim J. Quax,et al. High-Throughput Screening in Protein Engineering: Recent Advances and Future Perspectives , 2015, International journal of molecular sciences.
[16] Martin Hesseler,et al. Protein Engineering of α/β‐Hydrolase Fold Enzymes , 2011, Chembiochem : a European journal of chemical biology.
[17] Hein J Wijma,et al. Structure- and sequence-analysis inspired engineering of proteins for enhanced thermostability. , 2013, Current opinion in structural biology.
[18] S. Withers,et al. Glycosidase mechanisms: anatomy of a finely tuned catalyst. , 1999, Accounts of chemical research.
[19] Manfred T Reetz,et al. Shedding light on the efficacy of laboratory evolution based on iterative saturation mutagenesis. , 2009, Molecular bioSystems.
[20] Frances H Arnold,et al. Expanding the enzyme universe: accessing non-natural reactions by mechanism-guided directed evolution. , 2015, Angewandte Chemie.
[21] Hans Renata,et al. Ausdehnung des Enzym‐Universums: Zugang zu nicht‐natürlichen Reaktionen durch mechanismusgeleitete, gerichtete Evolution , 2015 .
[22] Robert Carlson,et al. The changing economics of DNA synthesis , 2009, Nature Biotechnology.
[23] Byung-Kwan Cho,et al. Rational Protein Engineering Guided by Deep Mutational Scanning , 2015, International journal of molecular sciences.
[24] Bernhard Hauer,et al. New generation of biocatalysts for organic synthesis. , 2014, Angewandte Chemie.
[25] F. J. Poelwijk,et al. The spatial architecture of protein function and adaptation , 2012, Nature.
[26] S. Hammer,et al. Biokatalysatoren für die organische Synthese – die neue Generation , 2014 .
[27] Frances H Arnold,et al. Neutral genetic drift can aid functional protein evolution , 2007, 0705.0201.
[28] Manfred T Reetz,et al. Laboratory evolution of stereoselective enzymes: a prolific source of catalysts for asymmetric reactions. , 2011, Angewandte Chemie.
[29] Roger A Sheldon,et al. Enzyme immobilisation in biocatalysis: why, what and how. , 2013, Chemical Society reviews.
[30] S. Inyurt. MANUSCRIPT , 2018 .
[31] D. Herschlag,et al. Catalytic promiscuity and the evolution of new enzymatic activities. , 1999, Chemistry & biology.
[32] T. Mikkelsen,et al. Comprehensive mutational scanning of a kinase in vivo reveals substrate-dependent fitness landscapes , 2014, Nucleic acids research.
[33] Dan S. Tawfik,et al. Mutational effects and the evolution of new protein functions , 2010, Nature Reviews Genetics.
[34] G. G. Stokes. "J." , 1890, The New Yale Book of Quotations.
[35] Donald Hilvert,et al. De novo enzymes by computational design. , 2013, Current opinion in chemical biology.
[36] G. Huisman,et al. Engineering the third wave of biocatalysis , 2012, Nature.
[37] Rocco Moretti,et al. Computational enzyme design. , 2013, Angewandte Chemie.
[38] Ana Cauerhff,et al. Recent trends in biocatalysis engineering. , 2012, Bioresource technology.
[39] W. Quax,et al. Bridging between organocatalysis and biocatalysis: asymmetric addition of acetaldehyde to β-nitrostyrenes catalyzed by a promiscuous proline-based tautomerase. , 2012, Angewandte Chemie.
[40] A. Zanghellini,et al. de novo computational enzyme design. , 2014, Current opinion in biotechnology.
[41] C Cruz,et al. Genetic studies of the lac repressor. XIV. Analysis of 4000 altered Escherichia coli lac repressors reveals essential and non-essential residues, as well as "spacers" which do not require a specific sequence. , 1994, Journal of molecular biology.
[42] John C Whitman,et al. Improving catalytic function by ProSAR-driven enzyme evolution , 2007, Nature Biotechnology.
[43] Yana Bromberg,et al. News from the protein mutability landscape. , 2013, Journal of molecular biology.
[44] M. T. Reetz. Gerichtete Evolution stereoselektiver Enzyme: Eine ergiebige Katalysator-Quelle f r asymmetrische Reaktionen , 2011 .
[45] R. Rosenfeld. Nature , 2009, Otolaryngology--head and neck surgery : official journal of American Academy of Otolaryngology-Head and Neck Surgery.
[46] Philip A. Romero,et al. Dissecting enzyme function with microfluidic-based deep mutational scanning , 2015, Proceedings of the National Academy of Sciences.
[47] B. Rost,et al. Better prediction of functional effects for sequence variants , 2015, BMC Genomics.
[48] S. Fields,et al. Deep mutational scanning: a new style of protein science , 2014, Nature Methods.
[49] W. Quax,et al. Using mutability landscapes of a promiscuous tautomerase to guide the engineering of enantioselective Michaelases , 2016, Nature Communications.
[50] R. Stevanato,et al. Enzyme immobilization: an update , 2013, Journal of chemical biology.
[51] R. Jensen. Enzyme recruitment in evolution of new function. , 1976, Annual review of microbiology.