Two hypotheses ‐ one answer

The structure of bacteriorhodopsin (BR) of Halobacterium halobium is known. Despite the lack of sequence similarities it is often taken as a model for eukaryotic G‐protein‐coupled receptors (GPCRs). Recently two hypotheses were used to support the homology of BR and GPCRs, namly evolution by exon shuffling and evolution by gene duplication. BR is a member of a family of halobacterial retinal proteins. The sequences of eight members of this family were used to test the two hypotheses. Based on sequence comparison, no indication for an evolutionary linkage between the two protein families could be found.

[1]  H. Khorana,et al.  The bacteriorhodopsin gene. , 1981, Proceedings of the National Academy of Sciences of the United States of America.

[2]  R Henderson,et al.  The structure of bacteriorhodopsin and its relevance to the visual opsins and other seven-helix G-protein coupled receptors. , 1990, Philosophical transactions of the Royal Society of London. Series B, Biological sciences.

[3]  M. Caron,et al.  Cloning, sequencing, and expression of the gene coding for the human platelet alpha 2-adrenergic receptor. , 1987, Science.

[4]  H. Sasabe,et al.  The primary structures of helices A to G of three new bacteriorhodopsin-like retinal proteins. , 1992, Journal of general microbiology.

[5]  G. W. Hatfield,et al.  The primary structure of a halorhodopsin from Natronobacterium pharaonis. Structural, functional and evolutionary implications for bacterial rhodopsins and halorhodopsins. , 1990, The Journal of biological chemistry.

[6]  T. Steitz,et al.  Identifying nonpolar transbilayer helices in amino acid sequences of membrane proteins. , 1986, Annual review of biophysics and biophysical chemistry.

[7]  J Hoflack,et al.  Modeling of G-protein-coupled receptors: application to dopamine, adrenaline, serotonin, acetylcholine, and mammalian opsin receptors. , 1992, Journal of medicinal chemistry.

[8]  J. Tittor A new view of an old pump: Bacteriorhodopsin , 1991 .

[9]  L. Pardo,et al.  On the use of the transmembrane domain of bacteriorhodopsin as a template for modeling the three-dimensional structure of guanine nucleotide-binding regulatory protein-coupled receptors. , 1992, Proceedings of the National Academy of Sciences of the United States of America.

[10]  Y. Mukohata,et al.  Isolation of a gene that encodes a new retinal protein, archaerhodopsin, from Halobacterium sp. aus-1. , 1989, The Journal of biological chemistry.

[11]  J. Risler,et al.  Amino acid substitutions in structurally related proteins. A pattern recognition approach. Determination of a new and efficient scoring matrix. , 1988, Journal of molecular biology.

[12]  D. Oesterhelt,et al.  Bacterioopsin, haloopsin, and sensory opsin I of the halobacterial isolate Halobacterium sp. strain SG1: three new members of a growing family , 1993, Journal of bacteriology.

[13]  Gebhard F. X. Schertler,et al.  Projection structure of rhodopsin , 1993, Nature.

[14]  J. Baldwin The probable arrangement of the helices in G protein‐coupled receptors. , 1993, The EMBO journal.

[15]  D. Grandy,et al.  Cloning and expression of human and rat Dt dopamine receptors , 1990, Nature.

[16]  D. Oesterhelt,et al.  The halo‐opsin gene. II. Sequence, primary structure of halorhodopsin and comparison with bacteriorhodopsin , 1987, The EMBO journal.

[17]  M. Caron,et al.  Cloning of the cDNA for the human beta 1-adrenergic receptor. , 1987, Proceedings of the National Academy of Sciences of the United States of America.

[18]  A. Agarwal,et al.  Sequence homology between bacteriorhodopsin and G‐protein coupled receptors: exon shuffling or evolution by duplication? , 1993, FEBS letters.

[19]  M. O. Dayhoff,et al.  Atlas of protein sequence and structure , 1965 .

[20]  H. V. Van Tol,et al.  Cloning, functional expression, and mRNA tissue distribution of the rat 5-hydroxytryptamine1A receptor gene. , 1990, The Journal of biological chemistry.

[21]  D. Oesterhelt,et al.  Two pumps, one principle: light-driven ion transport in halobacteria. , 1989, Trends in biochemical sciences.

[22]  Y. Mukohata,et al.  Archaerhodopsin-2, from Halobacterium sp. aus-2 further reveals essential amino acid residues for light-driven proton pumps. , 1991, Archives of biochemistry and biophysics.

[23]  D. Oesterhelt,et al.  Primary structure of sensory rhodopsin I, a prokaryotic photoreceptor. , 1989, The EMBO journal.

[24]  D. G. George,et al.  Mutation data matrix and its uses. , 1990, Methods in enzymology.

[25]  R. Henderson,et al.  Model for the structure of bacteriorhodopsin based on high-resolution electron cryo-microscopy. , 1990, Journal of molecular biology.