Control of cultivation processes for recombinant protein production: a review

The current state-of-the-art in control of cultivation processes for recombinant protein production is examined including the quantitative knowledge that can be activated for this purpose and the measurement techniques that can be employed for control at industrial manufacturing sites.

[1]  K. Andersen,et al.  Are growth rates of Escherichia coli in batch cultures limited by respiration? , 1980, Journal of bacteriology.

[2]  Strategies in High‐Level Expression of Recombinant Protein in Escherichia coli , 1994, Annals of the New York Academy of Sciences.

[3]  Tore Hägglund,et al.  The future of PID control , 2000 .

[4]  W. Ramirez,et al.  On-line optimal control of induced foreign protein production by recombinant bacteria in fed-batch reactors , 1996 .

[5]  Ana Alvarez,et al.  APPLICATION OF KALMAN FILTER ALGORITHMS IN A GMC CONTROL STRATEGY FOR FED-BATCH CULTIVATION PROCESS , 2004 .

[6]  Bernhard Sonnleitner,et al.  Controlled fed-batch by tracking the maximal culture capacity. , 2007, Journal of biotechnology.

[7]  Matthew C. Coleman,et al.  Bayesian parameter estimation with informative priors for nonlinear systems , 2006 .

[8]  F. Neidhardt,et al.  Physiology of the bacterial cell : a molecular approach , 1990 .

[9]  Rimvydas Simutis,et al.  Exploratory Analysis of Bioprocesses Using Artificial Neural Network‐Based Methods , 1997 .

[10]  Hisbullah,et al.  Comparative evaluation of various control schemes for fed-batch fermentation , 2002 .

[11]  Rimvydas Simutis,et al.  Improving the batch-to-batch reproducibility in microbial cultures during recombinant protein production by guiding the process along a predefined total biomass profile , 2006, Bioprocess and biosystems engineering.

[12]  Henry Y. Wang,et al.  Bioprocess monitoring and computer control: Key roots of the current PAT initiative , 2006, Biotechnology and bioengineering.

[13]  K. Schügerl,et al.  Progress in monitoring, modeling and control of bioprocesses during the last 20 years. , 2001, Journal of biotechnology.

[14]  Rimvydas Simutis,et al.  Advances in Modeling for Bioprocess Supervision and Control , 2008 .

[15]  Andrea Bagno,et al.  Fermentation diagnosis by multivariate statistical analysis , 2002, Applied biochemistry and biotechnology.

[16]  Gary Montague,et al.  Non-linear principal components analysis using genetic programming , 1997 .

[17]  G W Luli,et al.  Comparison of growth, acetate production, and acetate inhibition of Escherichia coli strains in batch and fed-batch fermentations , 1990, Applied and environmental microbiology.

[18]  Merja Penttilä,et al.  The effect of specific growth rate on protein synthesis and secretion in the filamentous fungus Trichoderma reesei. , 2005, Microbiology.

[19]  Charles L. Cooney,et al.  Computer control of bakers' yeast production , 1979 .

[20]  Jian Chen,et al.  Regulation of CCR in the γ-CGTase production from Bacillus macorous by the specific cell growth rate control , 2006 .

[21]  Carl-Fredrik Mandenius,et al.  Recent developments in the monitoring, modeling and control of biological production systems , 2004, Bioprocess and biosystems engineering.

[22]  J Schmitt,et al.  Design and Installation of a Next Generation Pilot Scale Fermentation System , 2003, Biotechnology progress.

[23]  John F. MacGregor,et al.  Multivariate SPC charts for monitoring batch processes , 1995 .

[24]  Rimvydas Simutis,et al.  Bioprocess optimization and control: Application of hybrid modelling , 1994 .

[25]  Jan F. M. Van Impe,et al.  Optimal control of (bio-)chemical reactors: generic properties of time and space dependent optimization , 2002, Math. Comput. Simul..

[26]  H Shimizu,et al.  Bioprocess Fault Detection by Nonlinear Multivariate Analysis: Application of an Artificial Autoassociative Neural Network and Wavelet Filter Bank , 1998, Biotechnology progress.

[27]  N. Dedhia,et al.  Improvement in recombinant protein production in ppGpp-deficient Escherichia coli. , 1997, Biotechnology and bioengineering.

[28]  Rimvydas Simutis,et al.  Generic model control of the specific growth rate in recombinant Escherichia coli cultivations. , 2006, Journal of biotechnology.

[29]  W. Fred Ramirez,et al.  Optimization of Fed‐Batch Bioreactors Using Neural Network Parameter Function Models , 1996 .

[30]  J. G. Ziegler,et al.  Optimum Settings for Automatic Controllers , 1942, Journal of Fluids Engineering.

[31]  Pekka Linko,et al.  An expert system in enzyme production control , 1990 .

[32]  Govind Rao,et al.  Generic model control of induced protein expression in high cell density cultivation of Escherichia coli using on-line GFP-fusion monitoring , 2001 .

[33]  R Oliveira,et al.  Adaptive dissolved oxygen control through the glycerol feeding in a recombinant Pichia pastoris cultivation in conditions of oxygen transfer limitation. , 2005, Journal of biotechnology.

[34]  Per Hagander,et al.  Bioreactor control using a probing feeding strategy and mid-ranging control , 2007 .

[35]  Barry Lennox,et al.  Automated Production Support for the Bioprocess Industry , 2002, Biotechnology progress.

[36]  San Kiang,et al.  Can pharmaceutical process development become high tech , 2006 .

[37]  P. Hagander,et al.  Avoiding acetate accumulation in Escherichia coli cultures using feedback control of glucose feeding. , 2001, Biotechnology and bioengineering.

[38]  Rimvydas Simutis,et al.  TEMPERATURE CONTROL IN FERMENTERS: APPLICATION OF NEURAL NETS AND FEEDBACK CONTROL IN BREWERIES , 1994 .

[39]  S. Shioya,et al.  Optimization and control in fed-batch bioreactors , 1992 .

[40]  T. Park,et al.  Fed‐batch operation of recombinant Escherichia coli containing trp promoter with controlled specific growth rate , 1994, Biotechnology and bioengineering.

[41]  Christopher L. Davey The Biomass Monitor Source Book , 1993 .

[42]  F. Kargı,et al.  Bioprocess Engineering: Basic Concepts , 1991 .

[43]  R. Simutis,et al.  PRODUCT FORMATION KINETICS IN A RECOMBINANT PROTEIN PRODUCTION PROCESS , 2007 .

[44]  Lee Jae-Ho,et al.  Production of human leukocyte interferon inEscherichiacoli by control of growth rate in fed-batch fermentation , 1989, Biotechnology Letters.

[45]  J Glassey,et al.  Issues in the development of an industrial bioprocess advisory system. , 2000, Trends in biotechnology.

[46]  Rimvydas Simutis,et al.  Estimation of biomass concentrations in fermentation processes for recombinant protein production , 2006, Bioprocess and biosystems engineering.

[47]  Methods and Instruments in Fermentation Gas Analysis , 2001 .

[49]  Z. Soons,et al.  Constant specific growth rate in fed-batch cultivation of Bordetella pertussis using adaptive control. , 2006, Journal of biotechnology.

[50]  Sunwon Park,et al.  Control of fed-batch fermentations. , 1999, Biotechnology advances.

[51]  Rimvydas Simutis,et al.  Improving the batch-to-batch reproducibility of microbial cultures during recombinant protein production by regulation of the total carbon dioxide production. , 2007, Journal of biotechnology.

[52]  Carl-Fredrik Mandenius,et al.  Online monitoring of a bioprocess based on a multi‐analyser system and multivariate statistical process modelling , 2002 .

[53]  Rimvydas Simutis,et al.  Open-loop control of the biomass concentration within the growth phase of recombinant protein production processes. , 2006, Journal of biotechnology.

[54]  R. Simutis,et al.  Product formation kinetics in genetically modified E. coli bacteria: inclusion body formation , 2008, Bioprocess and biosystems engineering.

[55]  Mass spectrometry: A tool for on-line monitoring of animal cell cultures , 2004, Cytotechnology.

[56]  E. Heinzle,et al.  Mass Spectrometry for On-line Monitoring of Biotechnological Processes , 1987, Biotechnology Methods.

[57]  Rimvydas Simutis,et al.  Using measurement data in bioprocess modelling and control , 1994 .

[58]  Matthew C Coleman,et al.  Retrospective optimization of time‐dependent fermentation control strategies using time‐independent historical data , 2006, Biotechnology and bioengineering.

[59]  Michael A. Henson,et al.  Nonlinear model predictive control: current status and future directions , 1998 .

[60]  Rimvydas Simutis,et al.  Application of Model Predictive Control to Cultivation Processes for Protein Production with Genetically Modified Bacteria , 2004 .

[61]  Rimvydas Simutis,et al.  DESIGN OF RECOMBINANT PROTEIN PRODUCTION PROCESSES , 2004 .

[62]  C. Cannizzaro,et al.  Control of yeast fed-batch process through regulation of extracellular ethanol concentration , 2004, Bioprocess and biosystems engineering.

[63]  Bernd Hitzmann,et al.  Kalman Filter Based Glucose Control at Small Set Points during Fed‐Batch Cultivation of Saccharomyces cerevisiae , 2008, Biotechnology progress.

[64]  Ralf Cord-Ruwisch,et al.  Online detection of feed demand in high cell density cultures of Escherichia coli by measurement of changes in dissolved oxygen transients in complex media , 2004, Biotechnology and bioengineering.

[65]  M. Kramer Nonlinear principal component analysis using autoassociative neural networks , 1991 .

[66]  E. Karlsson,et al.  On-line detection of acetate formation in Escherichia coli cultures using dissolved oxygen responses to feed transients. , 1999, Biotechnology and bioengineering.

[67]  Rui Oliveira,et al.  Design of a stable adaptive controller for driving aerobic fermentation processes near maximum oxygen transfer capacity , 2004 .

[68]  Rimvydas Simutis,et al.  Direct comparison of four different biomass estimation techniques against conventional dry weight measurements , 1998 .

[69]  Gary Montague,et al.  Autoassociative Neural Networks in Bioprocess Condition Monitoring , 1994 .

[70]  K. Yamuna Rani,et al.  Control of fermenters : a review , 1999 .

[71]  J. Nielsen,et al.  Bioreaction Engineering Principles , 1994, Springer US.

[72]  R. Simutis,et al.  Automatic control of the specific growth rate in fed-batch cultivation processes based on an exhaust gas analysis , 1996 .

[73]  Rimvydas Simutis,et al.  Hybrid modelling of yeast production processes – combination of a priori knowledge on different levels of sophistication , 1994 .

[74]  Svante Wold,et al.  Modelling and diagnostics of batch processes and analogous kinetic experiments , 1998 .

[75]  Rimvydas Simutis,et al.  Fuzzy-aided neural network for real-time state estimation and process prediction in the alcohol formation step of production-scale beer brewing , 1993 .

[76]  T Chattaway,et al.  An adaptive state estimator for detecting contaminants in bioreactors , 1989, Biotechnology and bioengineering.

[77]  Sten Bay Jørgensen,et al.  Supervision of fed-batch fermentations , 1999 .

[78]  J. E. Claes,et al.  On-line estimation of the specific growth rate based on viable biomass measurements: experimental validation , 1999 .

[79]  Jay H. Lee,et al.  Model predictive control: past, present and future , 1999 .

[80]  A POROUS MEMBRANE-CARRIER GAS MEASUREMENT SYSTEM FOR DISSOLVED GASES AND VOLATILES IN FERMENTATION SYSTEMS , 1981 .

[81]  Mark A. Kramer,et al.  Modeling chemical processes using prior knowledge and neural networks , 1994 .

[82]  R. Simutis,et al.  THE USE OF HYBRID MODELLING FOR THE OPTIMIZATION OF THE PENICILLIN FERMENTATION PROCESS , 1996 .

[83]  Per Hagander,et al.  Probing control of fed-batch cultivations: analysis and tuning , 2001 .