Determination of distributed polarizabilities to be used for peptide modeling

Abstract New sets of atomic hybrid parameters to be added to force fields for peptide modeling are presented. The approach used has been chosen as simple as possible to make their introduction into this kind of program easy. They are optimized to accurately reproduce the results obtained for polarizability and anisotropy from ab initio calculations on a series of model molecules and tested on a series of 30 molecules including some small peptides. Different empirical approaches to the calculation of molecular polarizabilities are exposed and their results compared. The most accurate approach gives mean polarizabilities which differ from the ab initio results by less than 10%.

[1]  Hans-Joachim Werner,et al.  PNO-CI and PNO-CEPA studies of electron correlation effects , 1976 .

[2]  P. Wormer,et al.  Anisotropy of long range interactions between linear molecules: H2-H2 and H2-He , 1979 .

[3]  Anthony J. Stone,et al.  Distributed multipole analysis, or how to describe a molecular charge distribution , 1981 .

[4]  J. Applequist,et al.  Fundamental relationships in the theory of electric multipole moments and multipole polarizabilities in static fields , 1984 .

[5]  J. R. Carl,et al.  Atom dipole interaction model for molecular polarizability. Application to polyatomic molecules and determination of atom polarizabilities , 1972 .

[6]  Christophe Voisin,et al.  Computation of accurate electronic molecular polarizabilities , 1992 .

[7]  Robert R. Birge,et al.  Calculation of molecular polarizabilities using an anisotropic atom point dipole interaction model which includes the effect of electron repulsion , 1980 .

[8]  L. Silberstein XIX. Dispersion and the size of molecules of hydrogen, oxygen, and nitrogen , 1917 .

[9]  N. Bridge,et al.  The polarization of laser light scattered by gases , 1964, Proceedings of the Royal Society of London. Series A, Mathematical and physical sciences.

[10]  R. A. Kuharski,et al.  Role of nuclear tunneling in aqueous ferrous–ferric electron transfer , 1990 .

[11]  William F. Murphy,et al.  The Rayleigh depolarization ratio and rotational Raman spectrum of water vapor and the polarizability components for the water molecule , 1977 .

[12]  Kenneth J. Miller,et al.  Calculation of the molecular polarizability tensor , 1990 .

[13]  M. Maestro,et al.  Localized molecular second-order properties , 1975 .

[14]  Kenneth J. Miller,et al.  Additivity methods in molecular polarizability , 1990 .

[15]  J. Applequist,et al.  A multipole interaction theory of electric polarization of atomic and molecular assemblies , 1985 .

[16]  Roger Fletcher,et al.  A Rapidly Convergent Descent Method for Minimization , 1963, Comput. J..

[17]  J. Applequist,et al.  An atom dipole interaction model for molecular optical properties , 1977 .

[18]  Arthur I. Vogel,et al.  369. Physical properties and chemical constitution. Part XXIII. Miscellaneous compounds. Investigation of the so-called co-ordinate or dative link in esters of oxy-acids and in nitro-paraffins by molecular refractivity determinations. atomic, structural, and group parachors and refractivities , 1948 .

[19]  T. H. Dunning Gaussian Basis Functions for Use in Molecular Calculations. III. Contraction of (10s6p) Atomic Basis Sets for the First‐Row Atoms , 1970 .

[20]  Keith E. Laidig,et al.  PROPERTIES OF ATOMS IN MOLECULES : ATOMIC POLARIZABILITIES , 1990 .