Finding Ensembles of Neurons in Spike Trains by Non-linear Mapping and Statistical Testing

Finding ensembles in neural spike trains has been a vital task in neurobiology ever since D.O. Hebb's work on synaptic plasticity [15]. However, with recent advancements in multi-electrode technology, which provides means to record 100 and more spike trains simultaneously, classical ensemble detection methods became infeasible due to a combinatorial explosion and a lack of reliable statistics. To overcome this problem we developed an approach that reorders the spike trains (neurons) based on pairwise distances and Sammon's mapping to one dimension. Thus, potential ensemble neurons are placed close to each other. As a consequence we can reduce the number of statistical tests considerably over enumeration-based approaches (like e.g. [1]), since linear traversals of the neurons suffice, and thus can achieve much lower rates of falsepositives. This approach is superior to classical frequent item set mining algorithms, especially if the data itself is imperfect, e.g. if only a fraction of the items in a considered set is part of a transaction.

[1]  G. Yule,et al.  On the association of attributes in statistics, with examples from the material of the childhood society, &c , 1900, Proceedings of the Royal Society of London.

[2]  T. Sørensen,et al.  A method of establishing group of equal amplitude in plant sociobiology based on similarity of species content and its application to analyses of the vegetation on Danish commons , 1948 .

[3]  Rajesh N. Davé,et al.  Characterization and detection of noise in clustering , 1991, Pattern Recognit. Lett..

[4]  Christian Borgelt,et al.  Efficient Identification of Assembly Neurons within Massively Parallel Spike Trains , 2009, Comput. Intell. Neurosci..

[5]  G. Yule On the Association of Attributes in Statistics: With Illustrations from the Material of the Childhood Society, &c , 1900 .

[6]  George L. Gerstein,et al.  Identification of functionally related neural assemblies , 1978, Brain Research.

[7]  P. Jaccard,et al.  Etude comparative de la distribution florale dans une portion des Alpes et des Jura , 1901 .

[8]  E. Capaldi,et al.  The organization of behavior. , 1992, Journal of applied behavior analysis.

[9]  Ad Aertsen,et al.  Stable propagation of synchronous spiking in cortical neural networks , 1999, Nature.

[10]  Richard W. Hamming,et al.  Error detecting and error correcting codes , 1950 .

[11]  C. Tappert,et al.  A Survey of Binary Similarity and Distance Measures , 2010 .

[12]  L. R. Dice Measures of the Amount of Ecologic Association Between Species , 1945 .

[13]  A. L. Edwards,et al.  An introduction to linear regression and correlation. , 1985 .

[14]  Sonja Grün,et al.  Impact of Higher-Order Correlations on Coincidence Distributions of Massively Parallel Data , 2007, Summer School on Neural Networks.

[15]  Aristides Gionis,et al.  Geometric and Combinatorial Tiles in 0-1 Data , 2004, PKDD.

[16]  John W. Sammon,et al.  A Nonlinear Mapping for Data Structure Analysis , 1969, IEEE Transactions on Computers.

[17]  Christian Borgelt,et al.  Mining Fuzzy Frequent Item Sets , 2005 .

[18]  Jean-François Boulicaut,et al.  Mining a New Fault-Tolerant Pattern Type as an Alternative to Formal Concept Discovery , 2006, ICCS.

[19]  Sonja Grün,et al.  An accretion based data mining algorithm for identification of sets of correlated neurons , 2009, BMC Neuroscience.

[20]  M. Chiani Error Detecting and Error Correcting Codes , 2012 .

[21]  M S Lewicki,et al.  A review of methods for spike sorting: the detection and classification of neural action potentials. , 1998, Network.

[22]  Frank Klawonn,et al.  A Novel Approach to Noise Clustering for Outlier Detection , 2006, Soft Comput..

[23]  Maria Marinaro,et al.  Dynamic Brain - from Neural Spikes to Behaviors , 2008, Lecture Notes in Computer Science.

[24]  Christian Borgelt,et al.  SaM: A Split and Merge Algorithm for Fuzzy Frequent Item Set Mining , 2009, IFSA/EUSFLAT Conf..

[25]  D J Rogers,et al.  A Computer Program for Classifying Plants. , 1960, Science.

[26]  Sonja Grün,et al.  Unitary Events in Multiple Single-Neuron Spiking Activity: I. Detection and Significance , 2002, Neural Computation.

[27]  Dino Pedreschi,et al.  Knowledge Discovery in Databases: PKDD 2004 , 2004, Lecture Notes in Computer Science.

[28]  Sze Huey Tan,et al.  The Correlation Coefficient , 2009 .