A mismatch between morphological and molecular data in lineages of Enteromius (Cypriniformes: Cyprinidae) from the Lowa basin (East Democratic Republic of the Congo: DRC) with the description of a new species

Six populations of morphologically similar Enteromius specimens with a weakly thickened and serrated dorsal spine from the Lowa basin were investigated using an integrative approach including qualitative characters, multivariate morphometrics, and DNA analyses (mtCOI and ncMyh6). These populations are nested within the COI lineage of the E. miolepis species-complex, but differ from all known Enteromius species from the Congo basin, by their dorsal spine morphology, colour pattern, and scale pattern at the dorsal-fin base. In addition, they represent two distinct COI lineages (genetic distance: 5.6–6.1%), with four populations forming a single well-supported lineage described as a new species, Enteromius radari sp. nov. The two remaining populations are sister to the E. miolepis lineage from the Itimbiri. The incongruent position of these two populations in the COI tree may point to past introgressive hybridization events, incomplete lineage sorting, or recent speciation. Analysis of a ncDNA marker (Myh6) did not provide more information due to its slow mutation rate. These results are indicative for introgression or mtDNA capture and provide the first report for such an evolutionary event in Enteromius from the Congo basin. http://zoobank.org/urn:lsid:zoobank.org:pub:D2263E5B-D403-404C-B66C-852215ED100C

[1]  Aida Verdes,et al.  Species delimitation and phylogenetic analyses reveal cryptic diversity within Cerebratulus marginatus (Nemertea: Pilidiophora) , 2021, Systematics and Biodiversity.

[2]  J. Snoeks,et al.  An annotated checklist of the fish fauna of the river systems draining the Kahuzi-Biega National Park (Upper Congo: Eastern DR Congo). , 2020, Journal of fish biology.

[3]  N. Bogutskaya,et al.  A new species of Enteromius (Actinopterygii, Cyprinidae, Smiliogastrinae) from the Awash River, Ethiopia, and the re-establishment of E. akakianus , 2020, ZooKeys.

[4]  C. Lever Cyprinidae , 2019, Reproductive Seasonality in Teleosts.

[5]  M. Stiassny,et al.  A New Small Barb (Cyprininae: Smiliogastrini) from the Louesse, Lekoumou (Upper Niari Basin), and Djoulou (Upper Ogowe Basin) Rivers in the Republic of Congo, West-Central Africa , 2018, American Museum Novitates.

[6]  H. Bart,et al.  Integrative taxonomy of the red-finned barb, Enteromius apleurogramma (Cyprininae: Smiliogastrini) from Kenya, supports recognition of E. amboseli as a valid species. , 2018, Zootaxa.

[7]  J. Snoeks,et al.  Grasping ecological opportunities: not one but five paedophagous species of Haplochromis (Teleostei: Cichlidae) in the Lake Edward system , 2018, Hydrobiologia.

[8]  W. Salzburger Understanding explosive diversification through cichlid fish genomics , 2018, Nature Reviews Genetics.

[9]  J. Snoeks,et al.  Ichthyofauna of the Itimbiri, Aruwimi, and Lindi/Tshopo rivers (Congo basin): Diversity and distribution patterns , 2017 .

[10]  J. Armbruster,et al.  The Taxonomy and Relationships of the African Small Barbs (Cypriniformes: Cyprinidae) , 2017, Copeia.

[11]  H. Bart,et al.  Multi-locus phylogeny reveals instances of mitochondrial introgression and unrecognized diversity in Kenyan barbs (Cyprininae: Smiliogastrini). , 2017, Molecular phylogenetics and evolution.

[12]  J. Snoeks,et al.  Morphometry and DNA barcoding reveal cryptic diversity in the genus Enteromius (Cypriniformes: Cyprinidae) from the Congo basin, Africa – Corrigendum , 2017 .

[13]  M. Stiassny,et al.  Review of the smiliogastrin cyprinids of the Kwilu River (Kasai Basin, central Africa), revised diagnosis for Clypeobarbus (Cyprinidae: Cyprininae: Smiliogastrini) and description of a new species. , 2016, Journal of fish biology.

[14]  R. Mayden,et al.  Molecular phylogeny and biogeography of African diploid barbs, ‘Barbus’, and allies in Africa and Asia (Teleostei: Cypriniformes) , 2016 .

[15]  M. Stiassny,et al.  A New Small Barb (Cyprininae: Smiliogastrini) from the N'sele and Mayi Ndombe Rivers in the Lower Reaches of the Middle Congo Basin (Democratic Republic of Congo, Central Africa) , 2016 .

[16]  J. Snoeks,et al.  Taxonomic challenges in freshwater fishes: a mismatch between morphology and DNA barcoding in fish of the north‐eastern part of the Congo basin , 2016, Molecular ecology resources.

[17]  J. Snoeks,et al.  Marcusenius kaninginii, a new species of elephantfish from the Lowa River basin, Democratic Republic of the Congo (Osteoglossiformes: Mormyridae) , 2016 .

[18]  B. David,et al.  Morphological and genetic analyses reveal a cryptic species complex in the echinoid Echinocardium cordatum and rule out a stabilizing selection explanation. , 2016, Molecular phylogenetics and evolution.

[19]  H. Bart,et al.  Nomenclatural changes should not be based on equivocally supported phylogenies: Reply to Yang et al. 2015. , 2015, Molecular phylogenetics and evolution.

[20]  M. Miya,et al.  Phylogeny and polyploidy: resolving the classification of cyprinine fishes (Teleostei: Cypriniformes). , 2015, Molecular phylogenetics and evolution.

[21]  P. Skelton,et al.  A new species of redfin (Teleostei, Cyprinidae, Pseudobarbus) from the Verlorenvlei River system, South Africa , 2014, ZooKeys.

[22]  Dong Liu,et al.  DNA barcoding and morphology reveal exceptional species diversity of Scoparia (Lepidoptera: Crambidae) from the Hailuogou Glacier area, China , 2014 .

[23]  M. Alves,et al.  Evolutionary history and population genetics of a cyprinid fish (Iberochondrostoma olisiponensis) endangered by introgression from a more abundant relative , 2014, Conservation Genetics.

[24]  Koichiro Tamura,et al.  MEGA6: Molecular Evolutionary Genetics Analysis version 6.0. , 2013, Molecular biology and evolution.

[25]  O. Moldovan,et al.  Can Environment Predict Cryptic Diversity? The Case of Niphargus Inhabiting Western Carpathian Groundwater , 2013, PloS one.

[26]  P. Hulva,et al.  Hidden diversity in Senegalese bats and associated findings in the systematics of the family Vespertilionidae , 2013, Frontiers in Zoology.

[27]  H. Ko,et al.  Evaluating the Accuracy of Morphological Identification of Larval Fishes by Applying DNA Barcoding , 2013, PloS one.

[28]  P. Prodöhl,et al.  Parallel and nonparallel ecological, morphological and genetic divergence in lake–stream stickleback from a single catchment , 2013, Journal of evolutionary biology.

[29]  L. Bernatchez,et al.  Glacial cycles as an allopatric speciation pump in north‐eastern American freshwater fishes , 2013, Molecular ecology.

[30]  J. Snoeks,et al.  The riverine fishes of Burundi (East Central Africa): an annotated checklist , 2016 .

[31]  N. Baeshen,et al.  Biological Identifications Through DNA Barcodes , 2012 .

[32]  J. Snoeks,et al.  ‘Barbus’ devosi, new species from the Malagarazi River basin in Burundi and Tanzania, East Africa (Cypriniformes: Cyprinidae) , 2012 .

[33]  B. Hausdorf,et al.  Parallel speciation in Astyanax cave fish (Teleostei) in Northern Mexico. , 2012, Molecular Phylogenetics and Evolution.

[34]  P. Skelton,et al.  Cryptic Diversity of African Tigerfish (Genus Hydrocynus) Reveals Palaeogeographic Signatures of Linked Neogene Geotectonic Events , 2011, PloS one.

[35]  P. Skelton,et al.  Walking the tightrope: trends in African freshwater systematic ichthyology. , 2011, Journal of fish biology.

[36]  R. Hanner,et al.  Incorporating DNA barcodes into a multi-year inventory of the fishes of the hyperdiverse Lower Congo River, with a multi-gene performance assessment of the genus Labeo as a case study , 2011, Mitochondrial DNA.

[37]  M. Stiassny,et al.  Phylogenetic relationships and the temporal context for the diversification of African characins of the family Alestidae (Ostariophysi: Characiformes): evidence from DNA sequence data. , 2011, Molecular phylogenetics and evolution.

[38]  J. Snoeks,et al.  Description of Barbus teugelsi sp nov (Cypriniformes: Cyprinidae) from the Little Scarcies basin in Guinea, Africa , 2011 .

[39]  Rob DeSalle,et al.  Integrating DNA barcode data and taxonomic practice: Determination, discovery, and description , 2011, BioEssays : news and reviews in molecular, cellular and developmental biology.

[40]  Robert A. Holland,et al.  The Diversity of Life in African Freshwaters: Under Water, Under Threat: An Analysis of the Status and Distribution of Freshwater Species throughout Mainland Africa , 2011 .

[41]  M. Stiassny,et al.  The status and distribution of freshwater fishes , 2011 .

[42]  M. Hellberg,et al.  NUCLEAR AND MITOCHONDRIAL SEQUENCE DATA REVEAL AND CONCEAL DIFFERENT DEMOGRAPHIC HISTORIES AND POPULATION GENETIC PROCESSES IN CARIBBEAN REEF FISHES , 2010, Evolution; international journal of organic evolution.

[43]  Prosanta Chakrabarty,et al.  Genetypes: a concept to help integrate molecular phylogenetics and taxonomy , 2010 .

[44]  R. Abell,et al.  Exposure of Africa's freshwater biodiversity to a changing climate , 2010 .

[45]  J. Irisson,et al.  Identifying coral reef fish larvae through DNA barcoding: a test case with the families Acanthuridae and Holocentridae. , 2010, Molecular phylogenetics and evolution.

[46]  R. Hanner,et al.  Identification of the larval and juvenile stages of the Cubera Snapper, Lutjanus cyanopterus, using DNA barcoding , 2009, Zootaxa.

[47]  R. Hanner,et al.  DNA barcoding and the mediocrity of morphology , 2009, Molecular ecology resources.

[48]  L. Weigt,et al.  Genetic identification and color descriptions of early life-history stages of Belizean Phaeoptyx and Astrapogon (Teleostei: Apogonidae) with Comments on identification of adult Phaeoptyx , 2009, Zootaxa.

[49]  Jonathan Bell A simple way to treat PCR products prior to sequencing using ExoSAP-IT. , 2008, BioTechniques.

[50]  Natalia Ivanova,et al.  Universal primer cocktails for fish DNA barcoding , 2007 .

[51]  Guoqing Lu,et al.  A practical approach to phylogenomics: the phylogeny of ray-finned fish (Actinopterygii) as a case study , 2007, BMC Evolutionary Biology.

[52]  R. Naiman,et al.  Freshwater biodiversity: importance, threats, status and conservation challenges , 2006, Biological reviews of the Cambridge Philosophical Society.

[53]  M. Ebach,et al.  More Taxonomy, Not DNA Barcoding , 2005 .

[54]  M. Kimura A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences , 1980, Journal of Molecular Evolution.

[55]  J. Powell,et al.  Extreme difference in rate of mitochondrial and nuclear DNA evolution in a large ectotherm, Galápagos tortoises. , 2004, Molecular phylogenetics and evolution.

[56]  Robert C. Edgar,et al.  MUSCLE: multiple sequence alignment with high accuracy and high throughput. , 2004, Nucleic acids research.

[57]  G. Turner A complete guide to the freshwater fishes of Southern Africa , 1995, Reviews in Fish Biology and Fisheries.

[58]  M. M. Coelho,et al.  Introgressive hybridisation between two Iberian Chondrostoma species (Teleostei, Cyprinidae) revisited: new evidence from morphology, mitochondrial DNA, allozymes and NOR-phenotypes , 2004 .

[59]  J. Good,et al.  PHYLOGEOGRAPHY AND INTROGRESSIVE HYBRIDIZATION: CHIPMUNKS (GENUS TAMIAS) IN THE NORTHERN ROCKY MOUNTAINS , 2003, Evolution; international journal of organic evolution.

[60]  D. Tautz,et al.  A plea for DNA taxonomy , 2003 .

[61]  P. Skelton Changes to the scientific and common names of southern African freshwater fishes , 2002 .

[62]  A. Machordom,et al.  Evolutionary history and speciation modes in the cyprinid genus Barbus , 2001, Proceedings of the Royal Society of London. Series B: Biological Sciences.

[63]  P. Hebert,et al.  Mitochondrial DNA Variation in Great Lakes Walleye (Stizostedion vitreum) Populations , 1988 .

[64]  Fred L. Bookstein,et al.  MULTIVARIATE DISCRIMINATION BY SHAPE IN RELATION TO SIZE , 1981 .

[65]  K. Banister,et al.  Fishes collected by the Zaire River Expedition, 1974-75 , 1979 .

[66]  J. Pellegrin Description d'un poisson nouveau de la region du Kivu appartenant au genre Varicorhinus , 1932 .

[67]  G. Boulenger XXXIIp—Barbus eutrenia and Bp holotæniac new Names for Barbus Kessleric Günther nec Steindachner , 1904 .

[68]  G. Boulenger Barbus eutaenia and B. holotaenia, new names for Barbus kessleri, Günther nec Steindachner , 2022 .