Fluorescence-based methods in the study of protein-protein interactions in living cells.

Multiprotein complexes partake in nearly all cell functions, thus the characterization and visualization of protein-protein interactions in living cells constitute an important step in the study of a large array of cellular mechanisms. Recently, noninvasive fluorescence-based methods using resonance energy transfer (RET), namely bioluminescence-RET (BRET) and fluorescence-RET (FRET), and those centered on protein fragment complementation, such as bimolecular fluorescence complementation (BiFC), have been successfully used in the study of protein interactions. These new technologies are nowadays the most powerful approaches for visualizing the interactions occurring within protein complexes in living cells, thus enabling the investigation of protein behavior in their normal milieu. Here we address the individual strengths and weaknesses of these methods when applied to the study of protein-protein interactions.

[1]  R. Pepperkok,et al.  Spectral imaging and linear un‐mixing enables improved FRET efficiency with a novel GFP2–YFP FRET pair , 2002, FEBS letters.

[2]  A. Miyawaki,et al.  Engineering FRET constructs using CFP and YFP. , 2008, Methods in cell biology.

[3]  T. Hynes,et al.  Cellular Localization of GFP-Tagged α Subunits , 2004 .

[4]  Jean-François Mercier,et al.  Quantitative Assessment of β1- and β2-Adrenergic Receptor Homo- and Heterodimerization by Bioluminescence Resonance Energy Transfer* , 2002, The Journal of Biological Chemistry.

[5]  M. Mann,et al.  Protein interaction screening by quantitative immunoprecipitation combined with knockdown (QUICK) , 2006, Nature Methods.

[6]  John R. James,et al.  BRET analysis of GPCR oligomerization: newer does not mean better , 2007, Nature Methods.

[7]  D. T. Yue,et al.  DsRed as a potential FRET partner with CFP and GFP. , 2003, Biophysical journal.

[8]  Chang‐Deng Hu,et al.  Visualization of interactions among bZIP and Rel family proteins in living cells using bimolecular fluorescence complementation. , 2002, Molecular cell.

[9]  Roger Y Tsien,et al.  Molecular biology and mutation of green fluorescent protein. , 2005, Methods of biochemical analysis.

[10]  D. Piston,et al.  Fluorescent protein FRET: the good, the bad and the ugly. , 2007, Trends in biochemical sciences.

[11]  Abhijit De,et al.  Noninvasive imaging of protein‐protein interactions from live cells and living subjects using bioluminescence resonance energy transfer , 2005, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.

[12]  W. Thomas,et al.  Extended bioluminescence resonance energy transfer (eBRET) for monitoring prolonged protein-protein interactions in live cells. , 2006, Cellular signalling.

[13]  Th. Förster Zwischenmolekulare Energiewanderung und Fluoreszenz , 1948 .

[14]  Y. Shyu,et al.  Visualization of AP-1–NF-κB ternary complexes in living cells by using a BiFC-based FRET , 2008, Proceedings of the National Academy of Sciences.

[15]  C. Johnson,et al.  A bioluminescence resonance energy transfer (BRET) system: application to interacting circadian clock proteins. , 1999, Proceedings of the National Academy of Sciences of the United States of America.

[16]  Nathan C Shaner,et al.  A guide to choosing fluorescent proteins , 2005, Nature Methods.

[17]  R. Bhat,et al.  The visible touch: in planta visualization of protein-protein interactions by fluorophore-based methods , 2006, Plant Methods.

[18]  K. Eidne,et al.  Illuminating insights into protein-protein interactions using bioluminescence resonance energy transfer (BRET) , 2006, Nature Methods.

[19]  L. Stryer,et al.  Energy transfer: a spectroscopic ruler. , 1967, Proceedings of the National Academy of Sciences of the United States of America.

[20]  Mark H Ellisman,et al.  A FlAsH-based FRET approach to determine G protein–coupled receptor activation in living cells , 2005, Nature Methods.

[21]  Joachim Goedhart,et al.  Improved green and blue fluorescent proteins for expression in bacteria and mammalian cells. , 2007, Biochemistry.

[22]  C. Hoogenraad,et al.  The postsynaptic architecture of excitatory synapses: a more quantitative view. , 2007, Annual review of biochemistry.

[23]  Han Liu,et al.  Identification of new fluorescent protein fragments for bimolecular fluorescence complementation analysis under physiological conditions. , 2006, BioTechniques.

[24]  Chitra Subramanian,et al.  Imaging protein interactions with bioluminescence resonance energy transfer (BRET) in plant and mammalian cells and tissues , 2007, Proceedings of the National Academy of Sciences.

[25]  Chang‐Deng Hu,et al.  Simultaneous visualization of multiple protein interactions in living cells using multicolor fluorescence complementation analysis , 2003, Nature Biotechnology.

[26]  M. Lohse,et al.  Measurement of the millisecond activation switch of G protein–coupled receptors in living cells , 2003, Nature Biotechnology.

[27]  T. Kerppola,et al.  Visualization of molecular interactions by fluorescence complementation , 2006, Nature Reviews Molecular Cell Biology.

[28]  M. Engelhard,et al.  C‐Terminal Fluorescence Labeling of Proteins for Interaction Studies on the Single‐Molecule Level , 2006, Chembiochem : a European journal of chemical biology.

[29]  Andrea Iaboni,et al.  A rigorous experimental framework for detecting protein oligomerization using bioluminescence resonance energy transfer , 2006, Nature Methods.

[30]  M. Chalfie,et al.  Combinatorial Marking of Cells and Organelles with Reconstituted Fluorescent Proteins , 2004, Cell.

[31]  R. Tsien,et al.  The Fluorescent Toolbox for Assessing Protein Location and Function , 2006, Science.

[32]  T. Hughes,et al.  Regions of α-amino-5-methyl-3-hydroxy-4-isoxazole propionic acid receptor subunits that are permissive for the insertion of green fluorescent protein , 2006, Neuroscience.

[33]  R. Cardullo Theoretical principles and practical considerations for fluorescence resonance energy transfer microscopy. , 2007, Methods in cell biology.

[34]  H. P. Adamo,et al.  Intramolecular Fluorescence Resonance Energy Transfer between Fused Autofluorescent Proteins Reveals Rearrangements of the N- and C-terminal Segments of the Plasma Membrane Ca2+ Pump Involved in the Activation* , 2007, Journal of Biological Chemistry.

[35]  Michel Bouvier,et al.  Methods to monitor the quaternary structure of G protein‐coupled receptors , 2005, The FEBS journal.

[36]  John P. Miller,et al.  Using the yeast two-hybrid system to identify interacting proteins. , 2004, Methods in molecular biology.

[37]  Jean-François Mercier,et al.  Quantitative assessment of beta 1- and beta 2-adrenergic receptor homo- and heterodimerization by bioluminescence resonance energy transfer. , 2002, The Journal of biological chemistry.

[38]  Stephen W. Michnick,et al.  Universal strategies in research and drug discovery based on protein-fragment complementation assays , 2007, Nature Reviews Drug Discovery.

[39]  L. Stryer Fluorescence energy transfer as a spectroscopic ruler. , 1978, Annual review of biochemistry.

[40]  L. Brand,et al.  N-terminal modification of proteins for fluorescence measurements. , 1997, Methods in enzymology.

[41]  T. Terwilliger,et al.  Protein tagging and detection with engineered self-assembling fragments of green fluorescent protein , 2005, Nature Biotechnology.

[42]  M. Davidson,et al.  Advances in fluorescent protein technology , 2011, Journal of Cell Science.

[43]  Yoshihiro Nakajima,et al.  Luciferase-YFP fusion tag with enhanced emission for single-cell luminescence imaging , 2007, Nature Methods.

[44]  J. Goodrich,et al.  Protein-protein interaction assays: eliminating false positive interactions , 2006, Nature Methods.

[45]  T. Kerppola,et al.  Design and implementation of bimolecular fluorescence complementation (BiFC) assays for the visualization of protein interactions in living cells , 2006, Nature Protocols.

[46]  R. Tsien,et al.  Improved monomeric red, orange and yellow fluorescent proteins derived from Discosoma sp. red fluorescent protein , 2004, Nature Biotechnology.

[47]  T. Kerppola,et al.  Complementary methods for studies of protein interactions in living cells , 2006, Nature Methods.

[48]  T. Kerppola,et al.  Visualization of protein interactions in living Caenorhabditis elegans using bimolecular fluorescence complementation analysis , 2008, Nature Protocols.

[49]  F. Ciruela,et al.  Light resonance energy transfer-based methods in the study of G protein-coupled receptor oligomerization. , 2008, BioEssays : news and reviews in molecular, cellular and developmental biology.