Tyrosine pathway regulation is host-mediated in the pea aphid symbiosis during late embryonic and early larval development

[1]  S. Colella,et al.  Tyrosine pathway regulation is host-mediated in the pea aphid symbiosis during late embryonic and early larval development , 2013, BMC Genomics.

[2]  Siyuan Zhu,et al.  Additional file 3: Table S3 , 2013 .

[3]  Jideng,et al.  Additional file 9: Figure S2 , 2013 .

[4]  T. Fukatsu,et al.  Cellular mechanism for selective vertical transmission of an obligate insect symbiont at the bacteriocyte–embryo interface , 2012, Proceedings of the National Academy of Sciences.

[5]  E. Sand.  Quantifying the symbiont contribution to essential amino acids in aphids : the importance of tryptophan for Uroleucon ambrosiae , 2012 .

[6]  D. Tagu,et al.  Sexual and asexual oogenesis require the expression of unique and shared sets of genes in the insect Acyrthosiphon pisum , 2012, BMC Genomics.

[7]  A. Wilson,et al.  Genome expansion and differential expression of amino acid transporters at the aphid/Buchnera symbiotic interface. , 2011, Molecular biology and evolution.

[8]  A. Wilson,et al.  Novel male-biased expression in paralogs of the aphid slimfast nutrient amino acid transporter expansion , 2011, BMC Evolutionary Biology.

[9]  J. Fayard,et al.  Multimodal dynamic response of the Buchnera aphidicola pLeu plasmid to variations in leucine demand of its host, the pea aphid Acyrthosiphon pisum , 2011, Molecular microbiology.

[10]  A. Moya,et al.  New Clues about the Evolutionary History of Metabolic Losses in Bacterial Endosymbionts, Provided by the Genome of Buchnera aphidicola from the Aphid Cinara tujafilina , 2011, Applied and Environmental Microbiology.

[11]  N. Gerardo,et al.  The power of paired genomes , 2011, Molecular ecology.

[12]  Ludovic Cottret,et al.  CycADS: an annotation database system to ease the development and update of BioCyc databases , 2011, Database J. Biol. Databases Curation.

[13]  A. Wilson,et al.  Genomic revelations of a mutualism: the pea aphid and its obligate bacterial symbiont , 2011, Cellular and Molecular Life Sciences.

[14]  N. Moran,et al.  Aphid genome expression reveals host–symbiont cooperation in the production of amino acids , 2011, Proceedings of the National Academy of Sciences.

[15]  Salvador Capella-Gutiérrez,et al.  PhylomeDB v3.0: an expanding repository of genome-wide collections of trees, alignments and phylogeny-based orthology and paralogy predictions , 2010, Nucleic Acids Res..

[16]  M. Goodisman,et al.  Functional Conservation of DNA Methylation in the Pea Aphid and the Honeybee , 2010, Genome biology and evolution.

[17]  S. Colella,et al.  The anatomy of an aphid genome: from sequence to biology. , 2010, Comptes rendus biologies.

[18]  T. Wilkinson,et al.  The role of intracellular symbiotic bacteria in the amino acid nutrition of embryos from the black bean aphid, Aphis fabae , 2010 .

[19]  G. Guernec,et al.  Transcriptomic analysis of intestinal genes following acquisition of pea enation mosaic virus by the pea aphid Acyrthosiphon pisum. , 2010, The Journal of general virology.

[20]  S. Colella,et al.  Genomic insight into the amino acid relations of the pea aphid, Acyrthosiphon pisum, with its symbiotic bacterium Buchnera aphidicola , 2010, Insect molecular biology.

[21]  S. O. Andersen.  Insect cuticular sclerotization: a review. , 2010, Insect biochemistry and molecular biology.

[22]  G. K. Davis,et al.  Comprehensive survey of developmental genes in the pea aphid, Acyrthosiphon pisum: frequent lineage‐specific duplications and losses of developmental genes , 2010, Insect molecular biology.

[23]  A. Ishikawa,et al.  Wing development genes of the pea aphid and differential gene expression between winged and unwinged morphs , 2010, Insect molecular biology.

[24]  O. Gascuel,et al.  SeaView version 4: A multiplatform graphical user interface for sequence alignment and phylogenetic tree building. , 2010, Molecular biology and evolution.

[25]  G. K. Davis,et al.  Genome Sequence of the Pea Aphid Acyrthosiphon pisum , 2010, PLoS biology.

[26]  Ludovic Cottret,et al.  Systemic analysis of the symbiotic function of Buchnera aphidicola, the primary endosymbiont of the pea aphid Acyrthosiphon pisum. , 2009, Comptes rendus biologies.

[27]  J. Viñuelas,et al.  Impact of Host Developmental Age on the Transcriptome of the Symbiotic Bacterium Buchnera aphidicola in the Pea Aphid (Acyrthosiphon pisum) , 2009, Applied and Environmental Microbiology.

[28]  T. Wilkinson,et al.  Embryo nutrition in parthenogenetic viviparous aphids , 2009 .

[29]  L. Riddiford,et al.  The molecular mechanisms of cuticular melanization: the ecdysone cascade leading to dopa decarboxylase expression in Manduca sexta. , 2009, Insect biochemistry and molecular biology.

[30]  A. Douglas.  The microbial dimension in insect nutritional ecology , 2009 .

[31]  N. Moran,et al.  The Dynamics and Time Scale of Ongoing Genomic Erosion in Symbiotic Bacteria , 2009, Science.

[32]  E. De Pauw,et al.  Transcriptomic and proteomic analyses of seasonal photoperiodism in the pea aphid , 2009, BMC Genomics.

[33]  D. Tagu,et al.  Shifting from clonal to sexual reproduction in aphids: physiological and developmental aspects , 2008, Biology of the cell.

[34]  Joaquín Dopazo,et al.  PhylomeDB: a database for genome-wide collections of gene phylogenies , 2007, Nucleic Acids Res..

[35]  B. Sabater-Muñoz,et al.  Seasonal photoperiodism regulates the expression of cuticular and signalling protein genes in the pea aphid. , 2007, Insect biochemistry and molecular biology.

[36]  G. K. Davis,et al.  Common genome‐wide patterns of transcript accumulation underlying the wing polyphenism and polymorphism in the pea aphid (Acyrthosiphon pisum) , 2007, Evolution & development.

[37]  Federica Calevro,et al.  Conservation of the links between gene transcription and chromosomal organization in the highly reduced genome of Buchnera aphidicola , 2007, BMC Genomics.

[38]  W. Rychlik,et al.  OLIGO 7 primer analysis software. , 2007, Methods in molecular biology.

[39]  Federica Calevro,et al.  Different Levels of Transcriptional Regulation Due to Trophic Constraints in the Reduced Genome of Buchnera aphidicola APS , 2006, Applied and Environmental Microbiology.

[40]  Andrés Moya,et al.  A Small Microbial Genome: The End of a Long Symbiotic Relationship? , 2006, Science.

[41]  I. Hansen,et al.  Identification of two cationic amino acid transporters required for nutritional signaling during mosquito reproduction , 2006, Journal of Experimental Biology.

[42]  G. K. Davis,et al.  A dual-genome microarray for the pea aphid, Acyrthosiphon pisum, and its obligate bacterial symbiont, Buchnera aphidicola , 2006, BMC Genomics.

[43]  Juan Miguel García-Gómez,et al.  BIOINFORMATICS APPLICATIONS NOTE Sequence analysis Manipulation of FASTQ data with Galaxy , 2005 .

[44]  P. Baumann.  Biology bacteriocyte-associated endosymbionts of plant sap-sucking insects. , 2005, Annual review of microbiology.

[45]  N. Moran,et al.  Regulation of Transcription in a Reduced Bacterial Genome: Nutrient-Provisioning Genes of the Obligate Symbiont Buchnera aphidicola , 2005, Journal of bacteriology.

[46]  Piero Carninci,et al.  Transcriptome analysis of the aphid bacteriocyte, the symbiotic host cell that harbors an endocellular mutualistic bacterium, Buchnera. , 2005, Proceedings of the National Academy of Sciences of the United States of America.

[47]  Cathy H. Wu,et al.  The Universal Protein Resource (UniProt) , 2004, Nucleic Acids Res..

[48]  Nils Blüthgen,et al.  Biological profiling of gene groups utilizing Gene Ontology. , 2004, Genome informatics. International Conference on Genome Informatics.

[49]  Robert C. Edgar,et al.  MUSCLE: multiple sequence alignment with high accuracy and high throughput. , 2004, Nucleic acids research.

[50]  M. Pfaffl,et al.  Determination of stable housekeeping genes, differentially regulated target genes and sample integrity: BestKeeper – Excel-based tool using pair-wise correlations , 2004, Biotechnology Letters.

[51]  Gordon K Smyth,et al.  Statistical Applications in Genetics and Molecular Biology Linear Models and Empirical Bayes Methods for Assessing Differential Expression in Microarray Experiments , 2011 .

[52]  Wolfgang Huber,et al.  Systematic analysis of T7 RNA polymerase based in vitro linear RNA amplification for use in microarray experiments , 2004, BMC Genomics.

[53]  C. Claudel-Renard,et al.  Enzyme-specific profiles for genome annotation: PRIAM. , 2003, Nucleic acids research.

[54]  T. Fukatsu,et al.  Transmission of symbiotic bacteria Buchnera to parthenogenetic embryos in the aphid Acyrthosiphon pisum (Hemiptera: Aphidoidea). , 2003, Arthropod structure & development.

[55]  J. Montagne,et al.  A Nutrient Sensor Mechanism Controls Drosophila Growth , 2003, Cell.

[56]  Rafael A Irizarry,et al.  Exploration, normalization, and summaries of high density oligonucleotide array probe level data. , 2003, Biostatistics.

[57]  T. Miura,et al.  A comparison of parthenogenetic and sexual embryogenesis of the pea aphid Acyrthosiphon pisum (Hemiptera: Aphidoidea). , 2003, Journal of experimental zoology. Part B, Molecular and developmental evolution.

[58]  S. Dudoit,et al.  Multiple Hypothesis Testing in Microarray Experiments , 2003 .

[59]  A I Saeed,et al.  TM4: a free, open-source system for microarray data management and analysis. , 2003, BioTechniques.

[60]  Alfonso Valencia,et al.  Reductive genome evolution in Buchnera aphidicola , 2003, Proceedings of the National Academy of Sciences of the United States of America.

[61]  N. Moran,et al.  50 Million Years of Genomic Stasis in Endosymbiotic Bacteria , 2002, Science.

[62]  G. Horgan,et al.  Relative expression software tool (REST©) for group-wise comparison and statistical analysis of relative expression results in real-time PCR , 2002 .

[63]  Andrés Moya,et al.  Extreme genome reduction in Buchnera spp.: Toward the minimal genome needed for symbiotic life , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[64]  M. Pfaffl,et al.  A new mathematical model for relative quantification in real-time RT-PCR. , 2001, Nucleic acids research.

[65]  M. Hattori,et al.  Genome sequence of the endocellular bacterial symbiont of aphids Buchnera sp. APS , 2000, Nature.

[66]  N. Moran,et al.  Bacterial endosymbionts in animals. , 2000, Current opinion in microbiology.

[67]  T. Wilkinson,et al.  Injection of essential amino acids substitutes for bacterial supply in aposymbiotic pea aphids (Acyrthosiphon pisum) , 2000 .

[68]  Rahbe,et al.  Fate of dietary sucrose and neosynthesis of amino acids in the pea aphid, acyrthosiphon pisum, reared on different diets , 1999, The Journal of experimental biology.

[69]  T. Wilkinson,et al.  The assimilation and allocation of nutrients by symbiotic and aposymbiotic pea aphids, Acyrthosiphon pisum , 1999 .

[70]  N. Moran,et al.  Bacteriocyte-Associated Endosymbionts of Insects , 1998 .

[71]  A. Dixon,et al.  Resource tracking in aphids: programmed reproductive strategies anticipate seasonal trends in habitat quality , 1998, Oecologia.

[72]  A. Douglas,et al.  Nutritional interactions in insect-microbial symbioses: aphids and their symbiotic bacteria Buchnera. , 1998, Annual review of entomology.

[73]  O Gascuel,et al.  BIONJ: an improved version of the NJ algorithm based on a simple model of sequence data. , 1997, Molecular biology and evolution.

[74]  P Vincens,et al.  Computational method to predict mitochondrially imported proteins and their targeting sequences. , 1996, European journal of biochemistry.

[75]  A. Douglas.  Reproductive failure and the free amino acid pools in pea aphids (Acyrthosiphon pisum) lacking symbiotic bacteria , 1996 .

[76]  G. Febvay,et al.  Metabolic Fate of Energetic Amino Acids in the Aposymbiotic Pea Aphid Acyrthosiphon pisum (Harris) (Homoptera: Aphididae) , 1996 .

[77]  A. Douglas,et al.  Requirement of pea aphids (Acyrthosiphon pisum) for their symbiotic bacteria , 1992 .

[78]  A. Douglas,et al.  The aposymbiotic aphid: An analysis of chlortetracycline-treated pea aphid, Acyrthosiphon pisum , 1991 .

[79]  H. Hayashi,et al.  Growth and reproduction of the symbiotic and aposymbiotic pea aphids, Acyrthosiphon pisum maintained on artificial diets , 1991 .

[80]  A. K. Minks,et al.  Aphids: Their Biology, Natural Enemies and Control , 1987 .

[81]  A. K. Minks,et al.  Aphids. Their biology, natural enemies and control. Volume 2A. , 1987 .

[82]  H. Ziegler.  Nature of Transported Substances , 1975 .

[83]  R. Hinde.  The fine structure of the mycetome symbiotes of the aphids Brevicoryne brassicae, Myzus persicae, and Macrosiphum rosae. , 1971, Journal of insect physiology.

[84]  T. Mittler.  Dietary amino acid requirements of the aphid Myzus persicae affected by antibiotic uptake. , 1971, The Journal of nutrition.

[85]  S. Jayaraj,et al.  The effect of certain antibiotics on reproduction of the black bean aphid, Aphis fabae scop. , 1967, The Annals of applied biology.

[86]  P. Buchner.  Endosymbiosis of Animals with Plant Microorganisms , 1965 .