Structures and comparative characterization of biosynthetic gene clusters for cyanosporasides, enediyne-derived natural products from marine actinomycetes.

Cyanosporasides are marine bacterial natural products containing a chlorinated cyclopenta[a]indene core of suspected enediyne polyketide biosynthetic origin. Herein, we report the isolation and characterization of novel cyanosporasides C-F (3-6) from the marine actinomycetes Salinispora pacifica CNS-143 and Streptomyces sp. CNT-179, highlighted by the unprecedented C-2' N-acetylcysteamine functionalized hexose group of 6. Cloning, sequencing, and mutagenesis of homologous ~50 kb cyanosporaside biosynthetic gene clusters from both bacteria afforded the first genetic evidence supporting cyanosporaside's enediyne, and thereby p-benzyne biradical, biosynthetic origin and revealed the molecular basis for nitrile and glycosyl functionalization. This study provides new opportunities for bioengineering of enediyne derivatives and expands the structural diversity afforded by enediyne gene clusters.

[1]  S. Tomasi,et al.  When the nine-membered enediynes play hide and seek. , 2012, Organic & biomolecular chemistry.

[2]  J. Badger,et al.  The Natural Product Domain Seeker NaPDoS: A Phylogeny Based Bioinformatic Tool to Classify Secondary Metabolite Gene Diversity , 2012, PloS one.

[3]  Susana P. Gaudêncio,et al.  Fijiolides A and B, inhibitors of TNF-alpha-induced NFkappaB activation, from a marine-derived sediment bacterium of the genus Nocardiopsis. , 2010, Journal of natural products.

[4]  Zhao-Xun Liang Complexity and simplicity in the biosynthesis of enediyne natural products. , 2010, Natural product reports.

[5]  C. Thibodeaux,et al.  Natural-product sugar biosynthesis and enzymatic glycodiversification. , 2008, Angewandte Chemie.

[6]  B. Shen,et al.  Biosynthesis of enediyne antitumor antibiotics. , 2008, Current topics in medicinal chemistry.

[7]  B. Moore,et al.  Unraveling the biosynthesis of the sporolide cyclohexenone building block. , 2008, Journal of the American Chemical Society.

[8]  B. Moore,et al.  Discovery and characterization of a marine bacterial SAM-dependent chlorinase. , 2008, Nature chemical biology.

[9]  B. Shen,et al.  Characterization of the maduropeptin biosynthetic gene cluster from Actinomadura madurae ATCC 39144 supporting a unifying paradigm for enediyne biosynthesis. , 2007, Journal of the American Chemical Society.

[10]  William Fenical,et al.  Genome sequencing reveals complex secondary metabolome in the marine actinomycete Salinispora tropica , 2007, Proceedings of the National Academy of Sciences.

[11]  C. Perrin,et al.  Nucleophilic addition to a p-benzyne derived from an enediyne: a new mechanism for halide incorporation into biomolecules. , 2007, Journal of the American Chemical Society.

[12]  D. Oh,et al.  Cyanosporasides A and B, chloro- and cyano-cyclopenta[a]indene glycosides from the marine actinomycete "Salinispora pacifica". , 2006, Organic letters.

[13]  P. Williams,et al.  Sporolides A and B: structurally unprecedented halogenated macrolides from the marine actinomycete Salinispora tropica. , 2005, Organic letters.

[14]  B. Shen,et al.  The neocarzinostatin biosynthetic gene cluster from Streptomyces carzinostaticus ATCC 15944 involving two iterative type I polyketide synthases. , 2005, Chemistry & biology.

[15]  P. Leadlay,et al.  Biosynthesis of the angiogenesis inhibitor borrelidin by Streptomyces parvulus Tü4055: insights into nitrile formation † , 2004, Molecular microbiology.

[16]  B. Shen,et al.  Rapid PCR amplification of minimal enediyne polyketide synthase cassettes leads to a predictive familial classification model , 2003, Proceedings of the National Academy of Sciences of the United States of America.

[17]  Brian O. Bachmann,et al.  A genomics-guided approach for discovering and expressing cryptic metabolic pathways , 2003, Nature Biotechnology.

[18]  Wen Liu,et al.  Biosynthesis of the Enediyne Antitumor Antibiotic C-1027 , 2002, Science.

[19]  Zhihong Guo,et al.  Insights into the Branched-Chain Formation of Mycarose: Methylation Catalyzed by an (S)-Adenosylmethionine-Dependent Methyltransferase. , 2001, Angewandte Chemie.

[20]  F. Fleming Nitrile-containing natural products , 1999 .

[21]  S. Aibara,et al.  The primary structure of omega-amino acid:pyruvate aminotransferase. , 1992, The Journal of biological chemistry.

[22]  R. White,et al.  Biochemical prophage induction assay: a rapid test for antitumor agents that interact with DNA. , 1983, Cancer research.