Rigorous performance evaluation in protein structure modelling and implications for computational biology
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[1] O. Schueler‐Furman,et al. Progress in Modeling of Protein Structures and Interactions , 2005, Science.
[2] Burkhard Rost,et al. Improving fold recognition without folds. , 2004, Journal of molecular biology.
[3] P Green,et al. Base-calling of automated sequencer traces using phred. II. Error probabilities. , 1998, Genome research.
[4] Jonathan Casper,et al. Combining local‐structure, fold‐recognition, and new fold methods for protein structure prediction , 2003, Proteins.
[5] John Moult,et al. A unifold, mesofold, and superfold model of protein fold use , 2002, Proteins.
[6] Liam J. McGuffin,et al. Improvement of the GenTHREADER Method for Genomic Fold Recognition , 2003, Bioinform..
[7] Krzysztof Fidelis,et al. Processing and evaluation of predictions in CASP4 , 2001, Proteins.
[8] K. Musier-Forsyth,et al. Trans-editing of Cys-tRNAPro by Haemophilus influenzae YbaK Protein* , 2004, Journal of Biological Chemistry.
[9] Jakub Pas,et al. Application of 3D‐Jury, GRDB, and Verify3D in fold recognition , 2003, Proteins.
[10] John Moult,et al. Molecular modeling of protein function regions , 2004, Proteins.
[11] Liam J McGuffin,et al. Assembling novel protein folds from super‐secondary structural fragments , 2003, Proteins.
[12] M J Sternberg,et al. Enhancement of protein modeling by human intervention in applying the automatic programs 3D‐JIGSAW and 3D‐PSSM , 2001, Proteins.
[13] B. Rost,et al. Critical assessment of methods of protein structure prediction (CASP)—Round 6 , 2005, Proteins.
[14] N. Grishin,et al. Gaps in structurally similar proteins: Towards improvement of multiple sequence alignment , 2003, Proteins.
[15] David Baker,et al. Protein Structure Prediction Using Rosetta , 2004, Numerical Computer Methods, Part D.
[16] E. Myers,et al. Basic local alignment search tool. , 1990, Journal of molecular biology.
[17] Guang R. Gao,et al. Quasi-consensus-based comparison of profile hidden Markov models for protein sequences , 2005, Bioinform..
[18] Ceslovas Venclovas,et al. Assessment of progress over the CASP experiments , 2003, Proteins.
[19] Leszek Rychlewski,et al. LiveBench‐8: The large‐scale, continuous assessment of automated protein structure prediction , 2005, Protein science : a publication of the Protein Society.
[20] P. Green,et al. Base-calling of automated sequencer traces using phred. I. Accuracy assessment. , 1998, Genome research.
[21] S. Subbiah,et al. The use of side‐chain packing methods in modeling bacteriophage repressor and cro proteins , 1995, Protein science : a publication of the Protein Society.
[22] Ceslovas Venclovas,et al. Comparative modeling in CASP5: Progress is evident, but alignment errors remain a significant hindrance , 2003, Proteins.
[23] J. Janin. Assessing predictions of protein–protein interaction: The CAPRI experiment , 2005, Protein science : a publication of the Protein Society.
[24] Anna Tramontano,et al. Assessment of homology‐based predictions in CASP5 , 2003, Proteins.
[25] J. Skolnick,et al. Ab initio protein structure prediction via a combination of threading, lattice folding, clustering, and structure refinement , 2001, Proteins.
[26] Patrick Aloy,et al. Predictions without templates: New folds, secondary structure, and contacts in CASP5 , 2003, Proteins.
[27] A. Sali,et al. Alignment of protein sequences by their profiles , 2004, Protein science : a publication of the Protein Society.
[28] Kevin Karplus,et al. Evaluation of protein multiple alignments by SAM-T99 using the BAliBASE multiple alignment test set , 2001, Bioinform..
[29] H B Broughton,et al. Molecular modeling. , 2020, Current opinion in chemical biology.
[30] M. Sippl. Recognition of errors in three‐dimensional structures of proteins , 1993, Proteins.
[31] D Baker,et al. Local sequence-structure correlations in proteins. , 1996, Current opinion in biotechnology.
[32] B. Rost,et al. Prediction of protein secondary structure at better than 70% accuracy. , 1993, Journal of molecular biology.
[33] S. Lewis,et al. Genome annotation assessment in Drosophila melanogaster. , 2000, Genome research.
[34] Richard Hughey,et al. Hidden Markov models for detecting remote protein homologies , 1998, Bioinform..
[35] Lisa N Kinch,et al. CASP5 assessment of fold recognition target predictions , 2003, Proteins.
[36] Christopher Bystroff,et al. Five Hierarchical Levels of Sequence-Structure Correlation in Proteins , 2004, Applied bioinformatics.
[37] Ronald M Levy,et al. Have we seen all structures corresponding to short protein fragments in the Protein Data Bank? An update. , 2003, Protein engineering.