Construction of a plant-transformation-competent BIBAC library and genome sequence analysis of polyploid Upland cotton (Gossypium hirsutum L.)

[1]  Hee-Jin Kim,et al.  Construction of a plant-transformation-competent BIBAC library and genome sequence analysis of polyploid Upland cotton (Gossypium hirsutumL.) , 2013, BMC Genomics.

[2]  Mi-Kyung Lee,et al.  Genome Physical Mapping of Polyploids: A BIBAC Physical Map of Cultivated Tetraploid Cotton, Gossypium hirsutum L , 2012, PloS one.

[3]  C. Scheuring,et al.  Preparation of megabase-sized DNA from a variety of organisms using the nuclei method for advanced genomics research , 2012, Nature Protocols.

[4]  C. Scheuring,et al.  Construction of BIBAC and BAC libraries from a variety of organisms for advanced genomics research , 2012, Nature Protocols.

[5]  M. Delany,et al.  A comparative physical map reveals the pattern of chromosomal evolution between the turkey (Meleagris gallopavo) and chicken (Gallus gallus) genomes , 2011, BMC Genomics.

[6]  Kazuhiro Sato,et al.  454 sequencing of pooled BAC clones on chromosome 3H of barley , 2011, BMC Genomics.

[7]  Huey-Wen Chuang,et al.  Characterization of a plant-transformation-ready large-insert BIBAC library of Arabidopsis and bombardment transformation of a large-insert BIBAC of the library into tobacco. , 2011, Genome.

[8]  D. Shtienberg,et al.  A BAC/BIBAC-based physical map of chickpea, Cicer arietinum L , 2010, BMC Genomics.

[9]  Haibao Tang,et al.  A draft physical map of a D-genome cotton species (Gossypium raimondii) , 2010, BMC Genomics.

[10]  R. Nelson,et al.  Numbers of genes in the NBS and RLK families vary by more than four-fold within a plant species and are regulated by multiple factors , 2010, Nucleic acids research.

[11]  Uwe Scholz,et al.  De novo 454 sequencing of barcoded BAC pools for comprehensive gene survey and genome analysis in the complex genome of barley , 2009 .

[12]  Jinling Huang,et al.  The cellulose synthase superfamily in fully sequenced plants and algae , 2009, BMC Plant Biology.

[13]  Meiping Zhang,et al.  Isolation of Megabase-Sized DNA Fragments from Plants , 2009 .

[14]  Dongyou Liu Handbook of Nucleic Acid Purification , 2009 .

[15]  Tianzhen Zhang,et al.  Construction of a bacterial artificial chromosome library of TM-1, a standard line for genetics and genomics in Upland cotton. , 2009, Journal of integrative plant biology.

[16]  D. Wildman,et al.  Primate phylogenomics: developing numerous nuclear non-coding, non-repetitive markers for ecological and phylogenetic applications and analysis of evolutionary rate variation , 2009, BMC Genomics.

[17]  P. Chee,et al.  Recent Advances in Cotton Genomics , 2008, International journal of plant genomics.

[18]  C. Kole,et al.  Map-based cloning of genes and quantitative trait loci. , 2008 .

[19]  H. Nguyen,et al.  A plant-transformation-competent BIBAC/BAC-based map of rice for functional analysis and genetic engineering of its genomic sequence. , 2007, Genome.

[20]  A. Paterson,et al.  A simple method for isolation of megabase DNA from cotton , 1994, Plant Molecular Biology Reporter.

[21]  Ma Zhi-ying BAC Library Construction and Characterization of Suyuan 7235,A Cotton Germplasm with High Fiber Strength , 2008 .

[22]  G. Zhang,et al.  Construction and characterization of the first bacterial artificial chromosome library for the cotton species Gossypium barbadense L. , 2006, Genome.

[23]  Rod A Wing,et al.  Differential lineage-specific amplification of transposable elements is responsible for genome size variation in Gossypium. , 2006, Genome research.

[24]  Jiu-huan Feng,et al.  Construction of BAC and BIBAC libraries from sunflower and identification of linkage group-specific clones by overgo hybridization , 2006, Theoretical and Applied Genetics.

[25]  Tianzhen Zhang,et al.  Construction and Identification of Bacterial Artificial Chromosome Library for 0-613-2R in Upland Cotton , 2006 .

[26]  Jonathan D. G. Jones,et al.  Effective vectors for transformation, expression of heterologous genes, and assaying transposon excision in transgenic plants , 1992, Transgenic Research.

[27]  M. Borodovsky,et al.  Gene identification in novel eukaryotic genomes by self-training algorithm , 2005, Nucleic acids research.

[28]  Mi-Kyung Lee,et al.  Genomic DNA Libraries and Physical Mapping , 2005 .

[29]  J. Stewart,et al.  Estimation of the nuclear DNA content of gossypium species. , 2005, Annals of botany.

[30]  Günter Kahl,et al.  The Handbook of Plant Genome Mapping: Genetic and Physical Mapping , 2005 .

[31]  E. Ortiz-Vázquez,et al.  Construction and characterization of a plant transformation-competent BIBAC library of the black Sigatoka-resistant banana Musa acuminata cv. Tuu Gia (AA) , 2005, Theoretical and Applied Genetics.

[32]  A. F. Robinson,et al.  Cloning, characterization, and evolution of the NBS-LRR-encoding resistance gene analogue family in polyploid cotton (Gossypium hirsutum L.). , 2004, Molecular plant-microbe interactions : MPMI.

[33]  A. Paterson,et al.  Development of genomic resources for cotton (Gossypium hirsutum L.): BAC library construction, preliminary STC analysis, and identification of clones associated with fiber development , 2001, Molecular Breeding.

[34]  A. Frary,et al.  Efficiency and Stability of High Molecular Weight DNA Transformation: an Analysis in Tomato , 2001, Transgenic Research.

[35]  R. Wing,et al.  Construction and characterization of two rice bacterial artificial chromosome libraries from the parents of a permanent recombinant inbred mapping population , 1996, Molecular Breeding.

[36]  J. Messing,et al.  Expression of the sorghum 10-member kafirin gene cluster in maize endosperm. , 2004, Nucleic acids research.

[37]  Zhanyou Xu,et al.  Construction of a binary BAC library for an apomictic monosomic addition line of Beta corolliflora in sugar beet and identification of the clones derived from the alien chromosome , 2004, Theoretical and Applied Genetics.

[38]  Lili Zhu,et al.  Construction of a genomic library of wild rice and Agrobacterium-mediated transformation of large insert DNA linked to BPH resistance locus. , 2003, Gene.

[39]  J. Wendel,et al.  Polyploidy and the Evolutionary History of Cotton , 2003 .

[40]  C. Tickle,et al.  Encyclopedia of Molecular Cell Biology and Molecular Medicine , 2003 .

[41]  Yujun Zhang,et al.  Sequence and analysis of rice chromosome 4 , 2002, Nature.

[42]  Q. Tao,et al.  One large-insert plant-transformation-competent BIBAC library and three BAC libraries of Japonica rice for genome research in rice and other grasses , 2002, Theoretical and Applied Genetics.

[43]  W. J. Kent,et al.  BLAT--the BLAST-like alignment tool. , 2002, Genome research.

[44]  Zhonghua Wang,et al.  Development of new transformation-competent artificial chromosome vectors and rice genomic libraries for efficient gene cloning. , 2002, Gene.

[45]  K. Meksem,et al.  An integrated map of Arabidopsis thaliana for functional analysis of its genome sequence. , 2001, Genetics.

[46]  H. Chen,et al.  Bacterial artificial chromosome-based physical map of the rice genome constructed by restriction fingerprint analysis. , 2001, Genetics.

[47]  P. Gresshoff,et al.  A bacterial artificial chromosome library of Lotus japonicus constructed in an Agrobacterium tumefaciens-transformable vector. , 2001, Molecular plant-microbe interactions : MPMI.

[48]  D. Moore cDNA Libraries , 1988, Current protocols in molecular biology.

[49]  The Arabidopsis Genome Initiative Analysis of the genome sequence of the flowering plant Arabidopsis thaliana , 2000, Nature.

[50]  T. Richmond,et al.  The cellulose synthase superfamily. , 2000, Plant physiology.

[51]  D. Hyten,et al.  Two large-insert soybean genomic libraries constructed in a binary vector: applications in chromosome walking and genome wide physical mapping , 2000, Theoretical and Applied Genetics.

[52]  S. Rothstein,et al.  A binary vector-based large insert library for Brassica napus and identification of clones linked to a fertility restorer locus for Ogura cytoplasmic male sterility (CMS). , 2000, Genome.

[53]  Deborah P. Delmer,et al.  CELLULOSE BIOSYNTHESIS: Exciting Times for A Difficult Field of Study. , 1999, Annual review of plant physiology and plant molecular biology.

[54]  D. Shibata,et al.  Complementation of plant mutants with large genomic DNA fragments by a transformation-competent artificial chromosome vector accelerates positional cloning. , 1999, Proceedings of the National Academy of Sciences of the United States of America.

[55]  A. Paterson,et al.  Comparative genetic mapping of allotetraploid cotton and its diploid progenitors , 1999 .

[56]  Q. Tao,et al.  Cloning and stable maintenance of DNA fragments over 300 kb in Escherichia coli with conventional plasmid-based vectors. , 1998, Nucleic acids research.

[57]  J. Wendel,et al.  The tortoise and the hare: choosing between noncoding plastome and nuclear Adh sequences for phylogeny reconstruction in a recently diverged plant group. , 1998, American journal of botany.

[58]  J. Bodeau,et al.  The Root Knot Nematode Resistance Gene Mi from Tomato Is a Member of the Leucine Zipper, Nucleotide Binding, Leucine-Rich Repeat Family of Plant Genes , 1998, Plant Cell.

[59]  K. El-Zik,et al.  D-subgenome bias of Xcm resistance genes in tetraploid Gossypium (cotton) suggests that polyploid formation has created novel avenues for evolution. , 1998, Genetics.

[60]  P. Green,et al.  Base-calling of automated sequencer traces using phred. I. Accuracy assessment. , 1998, Genome research.

[61]  P Green,et al.  Base-calling of automated sequencer traces using phred. II. Error probabilities. , 1998, Genome research.

[62]  S. Karlin,et al.  Prediction of complete gene structures in human genomic DNA. , 1997, Journal of molecular biology.

[63]  J. Wendel,et al.  Congruence and Consensus in the Cotton Tribe (Malvaceae) , 1997 .

[64]  D. Delmer,et al.  Higher plants contain homologs of the bacterial celA genes encoding the catalytic subunit of cellulose synthase. , 1996, Proceedings of the National Academy of Sciences of the United States of America.

[65]  S. Tanksley,et al.  Stable transfer of intact high molecular weight DNA into plant chromosomes. , 1996, Proceedings of the National Academy of Sciences of the United States of America.

[66]  A. Paterson,et al.  Preparation of megabase‐size DNA from plant nuclei , 1995 .

[67]  J. Wendel,et al.  Phylogenetics of the Cotton Genus (Gossypium): Character-State Weighted Parsimony Analysis of Chloroplast-DNA Restriction Site Data and Its Systematic and Biogeographic Implications , 1992 .

[68]  J. Sambrook,et al.  Molecular Cloning: A Laboratory Manual , 2001 .

[69]  A. Murdoch Cloning , 2007, Ethics & Medics.