Structure-function analysis of the DNA-binding domain of a transmembrane transcriptional activator

[1]  C. Hsiao,et al.  Structure and dynamics of polymyxin-resistance-associated response regulator PmrA in complex with promoter DNA , 2015, Nature Communications.

[2]  K. Jung,et al.  Structural and Functional Analysis of the Signal-Transducing Linker in the pH-Responsive One-Component System CadC of Escherichia coli. , 2015, Journal of molecular biology.

[3]  Ann M Stock,et al.  Temporal Hierarchy of Gene Expression Mediated by Transcription Factor Binding Affinity and Activation Dynamics , 2015, mBio.

[4]  Fernando Santos-Beneit,et al.  The Pho regulon: a huge regulatory network in bacteria , 2015, Front. Microbiol..

[5]  Dan M. Park,et al.  The Influence of Repressor DNA Binding Site Architecture on Transcriptional Control , 2014, mBio.

[6]  S. White,et al.  Topology, dimerization, and stability of the single-span membrane protein CadC. , 2014, Journal of molecular biology.

[7]  R. Janowski,et al.  Structural basis for RNA recognition in roquin-mediated post-transcriptional gene regulation , 2014, Nature Structural &Molecular Biology.

[8]  Chi-Fon Chang,et al.  Structural dynamics of the two-component response regulator RstA in recognition of promoter DNA element , 2014, Nucleic acids research.

[9]  Michael Sattler,et al.  NMR approaches for structural analysis of multidomain proteins and complexes in solution. , 2014, Progress in nuclear magnetic resonance spectroscopy.

[10]  D. Yernool,et al.  An asymmetric heterodomain interface stabilizes a response regulator–DNA complex , 2014, Nature Communications.

[11]  A. Camilli,et al.  Identification of a Membrane-Bound Transcriptional Regulator That Links Chitin and Natural Competence in Vibrio cholerae , 2014, mBio.

[12]  S. Chou,et al.  Solution structure and tandem DNA recognition of the C-terminal effector domain of PmrA from Klebsiella pneumoniae , 2013, Nucleic acids research.

[13]  Remo Rohs,et al.  Control of DNA minor groove width and Fis protein binding by the purine 2-amino group , 2013, Nucleic acids research.

[14]  S. Albers,et al.  The one‐component system ArnR: a membrane‐bound activator of the crenarchaeal archaellum , 2013, Molecular microbiology.

[15]  A. Canals,et al.  PhoB transcriptional activator binds hierarchically to pho box promoters , 2012, Biological chemistry.

[16]  Maxim V. Petoukhov,et al.  New developments in the ATSAS program package for small-angle scattering data analysis , 2012, Journal of applied crystallography.

[17]  P. Bisch,et al.  Fine-Tuning Control of phoBR Expression in Vibrio cholerae by Binding of PhoB to Multiple Pho Boxes , 2011, Journal of bacteriology.

[18]  M. Solà,et al.  The structure of a transcription activation subcomplex reveals how σ70 is recruited to PhoB promoters , 2011, The EMBO journal.

[19]  K. Jung,et al.  Crystal structure of the sensory domain of Escherichia coli CadC, a member of the ToxR‐like protein family , 2011, Protein science : a publication of the Protein Society.

[20]  Randy J. Read,et al.  Overview of the CCP4 suite and current developments , 2011, Acta crystallographica. Section D, Biological crystallography.

[21]  Kirsten Jung,et al.  New Insights into the Signaling Mechanism of the pH-responsive, Membrane-integrated Transcriptional Activator CadC of Escherichia coli* , 2011, The Journal of Biological Chemistry.

[22]  Antoine Danchin,et al.  Decrypting the H-NS-dependent regulatory cascade of acid stress resistance in Escherichia coli , 2010, BMC Microbiology.

[23]  Liisa Holm,et al.  Dali server: conservation mapping in 3D , 2010, Nucleic Acids Res..

[24]  M. Dziejman,et al.  vttRA and vttRB Encode ToxR Family Proteins That Mediate Bile-Induced Expression of Type Three Secretion System Genes in a Non-O1/Non-O139 Vibrio cholerae Strain , 2010, Infection and Immunity.

[25]  George M. Sheldrick,et al.  Experimental phasing with SHELXC/D/E: combining chain tracing with density modification , 2010, Acta crystallographica. Section D, Biological crystallography.

[26]  P. Emsley,et al.  Features and development of Coot , 2010, Acta crystallographica. Section D, Biological crystallography.

[27]  Kirsten Jung,et al.  Induction kinetics of a conditional pH stress response system in Escherichia coli. , 2009, Journal of molecular biology.

[28]  Ann M Stock,et al.  Biological insights from structures of two-component proteins. , 2009, Annual review of microbiology.

[29]  Xiang-Jun Lu,et al.  Web 3DNA—a web server for the analysis, reconstruction, and visualization of three-dimensional nucleic-acid structures , 2009, Nucleic Acids Res..

[30]  S. Choi,et al.  Activation of the Vibrio vulnificus cadBA Operon by Leucine-responsive regulatory protein is mediated by CadC. , 2008, Journal of microbiology and biotechnology.

[31]  Mark Johnson,et al.  NCBI BLAST: a better web interface , 2008, Nucleic Acids Res..

[32]  Kirsten Jung,et al.  The membrane‐integrated transcriptional activator CadC of Escherichia coli senses lysine indirectly via the interaction with the lysine permease LysP , 2008, Molecular microbiology.

[33]  S. Egan,et al.  Unravelling the role of the ToxR-like transcriptional regulator WmpR in the marine antifouling bacterium Pseudoalteromonas tunicata. , 2006, Microbiology.

[34]  Kirsten Jung,et al.  CadC-Mediated Activation of the cadBA Promoter in Escherichia coli , 2006, Journal of Molecular Microbiology and Biotechnology.

[35]  Paul Schanda,et al.  SOFAST-HMQC Experiments for Recording Two-dimensional Deteronuclear Correlation Spectra of Proteins within a Few Seconds , 2005, Journal of biomolecular NMR.

[36]  S. Choi,et al.  CadC Activates pH-Dependent Expression of the Vibrio vulnificus cadBA Operon at a Distance through Direct Binding to an Upstream Region , 2005, Journal of bacteriology.

[37]  Wayne Boucher,et al.  The CCPN data model for NMR spectroscopy: Development of a software pipeline , 2005, Proteins.

[38]  Victor S Lamzin,et al.  Auto-rickshaw: an automated crystal structure determination platform as an efficient tool for the validation of an X-ray diffraction experiment. , 2005, Acta crystallographica. Section D, Biological crystallography.

[39]  L. Aravind,et al.  The many faces of the helix-turn-helix domain: transcription regulation and beyond. , 2005, FEMS microbiology reviews.

[40]  John W. Foster,et al.  Escherichia coli acid resistance: tales of an amateur acidophile , 2004, Nature Reviews Microbiology.

[41]  Q. Hao.  ABS: a program to determine absolute configuration and evaluate anomalous scatterer substructure , 2004 .

[42]  A. Kuraishi,et al.  Excretion and uptake of cadaverine by CadB and its physiological functions in Escherichia coli , 2004, Molecular microbiology.

[43]  C. Dominguez,et al.  HADDOCK: a protein-protein docking approach based on biochemical or biophysical information. , 2003, Journal of the American Chemical Society.

[44]  M. Solà,et al.  Tandem DNA recognition by PhoB, a two-component signal transduction transcriptional activator. , 2002, Structure.

[45]  V S Lamzin,et al.  ARP/wARP and molecular replacement. , 2001, Acta crystallographica. Section D, Biological crystallography.

[46]  A. Camilli,et al.  Regulation of Vibrio cholerae Genes Required for Acid Tolerance by a Member of the “ToxR-Like” Family of Transcriptional Regulators , 2000, Journal of bacteriology.

[47]  K D Cowtan,et al.  Density modification for macromolecular phase improvement. , 1999, Progress in biophysics and molecular biology.

[48]  Christian Griesinger,et al.  Heteronuclear multidimensional NMR experiments for the structure determination of proteins in solution employing pulsed field gradients , 1999 .

[49]  J. Mekalanos,et al.  TcpP protein is a positive regulator of virulence gene expression in Vibrio cholerae. , 1998, Proceedings of the National Academy of Sciences of the United States of America.

[50]  G. Murshudov,et al.  Refinement of macromolecular structures by the maximum-likelihood method. , 1997, Acta crystallographica. Section D, Biological crystallography.

[51]  R. Isberg,et al.  Transcriptional regulation of the Yersinia pseudotuberculosis pH 6 antigen adhesin by two envelope‐associated components , 1997, Molecular microbiology.

[52]  T. Kawamoto,et al.  DNA binding of PhoB and its interaction with RNA polymerase. , 1996, Journal of molecular biology.

[53]  M. Inouye,et al.  Tandem Binding of Six OmpR Proteins to the ompF Upstream Regulatory Sequence of Escherichia coli(*) , 1995, The Journal of Biological Chemistry.

[54]  M. Neely,et al.  Roles of LysP and CadC in mediating the lysine requirement for acid induction of the Escherichia coli cad operon , 1994, Journal of bacteriology.

[55]  T. Pawson,et al.  Backbone dynamics of a free and phosphopeptide-complexed Src homology 2 domain studied by 15N NMR relaxation. , 1994, Biochemistry.

[56]  S. Grzesiek,et al.  The Importance of Not Saturating H2o in Protein NMR : application to Sensitivity Enhancement and Noe Measurements , 1993 .

[57]  J. Thornton,et al.  PROCHECK: a program to check the stereochemical quality of protein structures , 1993 .

[58]  G. Bennett,et al.  Modulation of acid-induced amino acid decarboxylase gene expression by hns in Escherichia coli , 1993, Journal of bacteriology.

[59]  V. Saudek,et al.  Gradient-tailored excitation for single-quantum NMR spectroscopy of aqueous solutions , 1992, Journal of biomolecular NMR.

[60]  G. Bennett,et al.  Regulation of the Escherichia coli cad operon: location of a site required for acid induction , 1992, Journal of bacteriology.

[61]  V. DiRita.  Co‐ordinate expression of virulence genes by ToxR in Vibrio cholerae , 1992, Molecular microbiology.

[62]  J. Slonczewski,et al.  Identification of elements involved in transcriptional regulation of the Escherichia coli cad operon by external pH , 1992, Journal of bacteriology.

[63]  J. Mekalanos,et al.  Periplasmic interaction between two membrane regulatory proteins, ToxR and ToxS, results in signal transduction and transcriptional activation , 1991, Cell.

[64]  G. Bennett,et al.  Construction of lac fusions to the inducible arginine‐and lysine decarboxylase genes of Escherichia coli K12 , 1989, Molecular microbiology.

[65]  J. Mekalanos,et al.  Cholera toxin transcriptional activator ToxR is a transmembrane DNA binding protein , 1987, Cell.

[66]  S. French,et al.  On the treatment of negative intensity observations , 1978 .

[67]  W. Epstein,et al.  Potassium Transport Loci in Escherichia coli K-12 , 1971, Journal of bacteriology.

[68]  P. Evans,et al.  Scaling and assessment of data quality. , 2006, Acta crystallographica. Section D, Biological crystallography.

[69]  Victor S Lamzin,et al.  Breaking good resolutions with ARP/wARP. , 2004, Journal of synchrotron radiation.

[70]  P. Güntert.  Automated NMR structure calculation with CYANA. , 2004, Methods in molecular biology.

[71]  G N Murshudov,et al.  Use of TLS parameters to model anisotropic displacements in macromolecular refinement. , 2001, Acta crystallographica. Section D, Biological crystallography.

[72]  Jeffrey H. Miller.  Experiments in molecular genetics , 1972 .