Safety and functional significance of Weissella cibaria and W. confusa 1 in food: a polyphasic approach 2

13 Weissella cibaria and Weissella confusa are controversial species of lactic acid bacteria (LAB) 14 found in food products. They are naturally present in many fermentation processes of vegetables 15 and cereals, with a positive implication for the quality of food. On the other hand, Weissella species 16 have been associated to possible human infections, and for this reason the strains of the species are 17 not yet used as starter cultures and are not included in Qualified Presumption of Safety status of 18 European Food Safety Authority (EFSA). An in-depth analysis of the physiological and genetic 19 characteristics of Weissella species could help to select suitable strains for possible practical 20 applications. A comparative genome analysis of 15 sequenced W. cibaria and five W. confusa 21 genomes available to date was carried out, in parallel with a polyphasic study of twelve strains of 22 W. cibaria and eight strains of W. confusa previously isolated from sourdough-like maize bran 23 fermentation. The comparative genomic analysis resulted in an absence of severe pathogenicity 24 factors. Although some putative virulence genes were found, these, for homology and function, 25 were present in other LAB species/strains, considered safe by EFSA and commonly used as 26 probiotics. The phenotypic tests carried out on our strains corroborated the genomic results. 27 Moreover, interesting functional and pro-technological traits were highlighted in the tested strains, 28 for both the species. 29

[1]  Lactococcus lactis , 2020, Definitions.

[2]  Lactobacillus plantarum strain 299 , 2020, Definitions.

[3]  Claude E. Boyd Redox Potential , 2019, Water Quality.

[4]  M. Gänzle,et al.  Effect of temperature on production of oligosaccharides and dextran by Weissella cibaria 10 M. , 2018, International journal of food microbiology.

[5]  I. De Noni,et al.  Functional characterization of Lactobacillus plantarum ITEM 17215: A potential biocontrol agent of fungi with plant growth promoting traits, able to enhance the nutritional value of cereal products. , 2018, Food research international.

[6]  S. Yang,et al.  Isolation of Weissella strains as potent probiotics to improve antioxidant activity of salted squid by fermentation , 2018 .

[7]  T. Silvetti,et al.  Evaluation of microbial consortia and chemical changes in spontaneous maize bran fermentation , 2017, AMB Express.

[8]  F. Remize,et al.  Why Are Weissella spp. Not Used as Commercial Starter Cultures for Food Fermentation , 2017 .

[9]  Xin Zhao,et al.  A fibronectin‐binding protein (FbpA) of Weissella cibaria inhibits colonization and infection of Staphylococcus aureus in mammary glands , 2017, Cellular microbiology.

[10]  Yun-Shien Lee,et al.  Comparative genomic analysis of bacteriocin-producing Weissella cibaria 110 , 2017, Applied Microbiology and Biotechnology.

[11]  G. Reid,et al.  Investigating probiotic yoghurt to reduce an aflatoxin B1 biomarker among school children in eastern Kenya: Preliminary study , 2016 .

[12]  S. Garneau‐Tsodikova,et al.  Mechanisms of Resistance to Aminoglycoside Antibiotics: Overview and Perspectives. , 2016, MedChemComm.

[13]  V. Azevedo,et al.  Comparative genome analysis of Weissella ceti, an emerging pathogen of farm-raised rainbow trout , 2015, BMC Genomics.

[14]  J. Balada-llasat,et al.  Identification and significance of Weissella species infections , 2015, Front. Microbiol..

[15]  V. Fusco,et al.  The controversial nature of the Weissella genus: technological and functional aspects versus whole genome analysis-based pathogenic potential for their application in food and health , 2015, Front. Microbiol..

[16]  R. Sleator,et al.  Genomics of Weissella cibaria with an examination of its metabolic traits. , 2015, Microbiology.

[17]  Horst Neve,et al.  The genus Weissella: taxonomy, ecology and biotechnological potential , 2015, Front. Microbiol..

[18]  M. G. Fortina,et al.  Insertion sequence elements in Lactococcus garvieae. , 2015, Gene.

[19]  Christina A. Cuomo,et al.  Analysis of a Food-Borne Fungal Pathogen Outbreak: Virulence and Genome of a Mucor circinelloides Isolate from Yogurt , 2014, mBio.

[20]  M. Gänzle,et al.  Evaluation of exopolysaccharide producing Weissella cibaria MG1 strain for the production of sourdough from various flours. , 2014, Food microbiology.

[21]  A. Margolles,et al.  Antibiotic resistance in probiotic bacteria , 2013, Front. Microbiol..

[22]  R. Vogel,et al.  Influence of lactic acid bacteria on the oxidation–reduction potential of buckwheat (Fagopyrum esculentum Moench) sourdoughs , 2012, European Food Research and Technology.

[23]  N. Ahmed,et al.  Characterization of high molecular weight dextran produced by Weissella cibaria CMGDEX3. , 2012, Carbohydrate polymers.

[24]  J. Nakayama,et al.  Characterization and identification of weissellicin Y and weissellicin M, novel bacteriocins produced by Weissella hellenica QU 13 , 2012, Journal of applied microbiology.

[25]  H. Liesegang,et al.  Genomic analysis reveals Lactobacillus sanfranciscensis as stable element in traditional sourdoughs , 2011, Microbial cell factories.

[26]  P. Thonart,et al.  Antifungal activity of 2 lactic acid bacteria of the Weissella genus isolated from food. , 2011, Journal of food science.

[27]  C. Schwab,et al.  Exopolysaccharide-forming Weissella strains as starter cultures for sorghum and wheat sourdoughs. , 2010, Journal of agricultural and food chemistry.

[28]  Kati Katina,et al.  In situ production and analysis of Weissella confusa dextran in wheat sourdough. , 2009, Food microbiology.

[29]  Rick L. Stevens,et al.  The RAST Server: Rapid Annotations using Subsystems Technology , 2008, BMC Genomics.

[30]  S. Morandi,et al.  Redox potential to discriminate among species of lactic acid bacteria , 2007, Journal of applied microbiology.

[31]  F. Yanagida,et al.  Weissellicin 110, a Newly Discovered Bacteriocin from Weissella cibaria 110, Isolated from Plaa-Som, a Fermented Fish Product from Thailand , 2007, Applied and Environmental Microbiology.

[32]  C. Franz,et al.  Antibiotic Resistances of Starter and Probiotic Strains of Lactic Acid Bacteria , 2006, Applied and Environmental Microbiology.

[33]  M. G. Fortina,et al.  Characterization of Lactobacillus helveticus strains isolated from cheeses by distribution studies of insertion sequences. , 2006, International journal of food microbiology.

[34]  R. Cachon,et al.  Addition of oxidizing or reducing agents to the reaction medium influences amino acid conversion to aroma compounds by Lactococcus lactis , 2006, Journal of applied microbiology.

[35]  Patricia Siguier,et al.  ISfinder: the reference centre for bacterial insertion sequences , 2005, Nucleic Acids Res..

[36]  J. Frece,et al.  Adhesion and aggregation ability of probiotic strain Lactobacillus acidophilus M92 , 2003, Journal of applied microbiology.

[37]  A. Katla,et al.  Antimicrobial susceptibility of starter culture bacteria used in Norwegian dairy products. , 2001, International journal of food microbiology.

[38]  A. Evidente,et al.  Purification and Characterization of Novel Antifungal Compounds from the Sourdough Lactobacillus plantarum Strain 21B , 2000, Applied and Environmental Microbiology.

[39]  Teruyo Ito,et al.  A New Class of Genetic Element, Staphylococcus Cassette Chromosome mec, Encodes Methicillin Resistance in Staphylococcus aureus , 2000, Antimicrobial Agents and Chemotherapy.

[40]  R. Hutkins,et al.  Fermentation of Fructooligosaccharides by Lactic Acid Bacteria and Bifidobacteria , 2000, Applied and Environmental Microbiology.

[41]  S. Bover-Cid,et al.  Improved screening procedure for biogenic amine production by lactic acid bacteria. , 1999, International journal of food microbiology.

[42]  P. Frey The Leloir pathway: a mechanistic imperative for three enzymes to change the stereochemical configuration of a single carbon in galactose , 1996, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.

[43]  M. Collins,et al.  Taxonomic studies on some leuconostoc-like organisms from fermented sausages: description of a new genus Weissella for the Leuconostoc paramesenteroides group of species. , 1993, The Journal of applied bacteriology.

[44]  A. Noé Taxonomic Studies , 1934, Botanical Gazette.

[45]  N. Deepa,et al.  Fusarium verticillioides, a globally important pathogenof agriculture and livestock: A review , 2017 .

[46]  W. Witte,et al.  Antibiotic resistance. , 2013, International journal of medical microbiology : IJMM.

[47]  Mark A. Williams,et al.  Fibronectin: a multidomain host adhesin targeted by bacterial fibronectin-binding proteins. , 2011, FEMS microbiology reviews.

[48]  P. Carnevali,et al.  Glucan and fructan production by sourdough Weissella cibaria and Lactobacillus plantarum. , 2006, Journal of agricultural and food chemistry.

[49]  P. Vandamme,et al.  Taxonomic study of Weissella confusa and description of Weissella cibaria sp. nov., detected in food and clinical samples. , 2002, International journal of systematic and evolutionary microbiology.

[50]  K. Ikemura Development and application , 1971 .