Single-molecule and population probing of chromatin structure using DNA methyltransferases.

[1]  Scott A. Hoose,et al.  Active PHO5 chromatin encompasses variable numbers of nucleosomes at individual promoters , 2006, Nature Structural &Molecular Biology.

[2]  Archana Dhasarathy,et al.  Mapping chromatin structure in vivo using DNA methyltransferases. , 2004, Methods.

[3]  Christoph Grunau,et al.  Identification and resolution of artifacts in bisulfite sequencing. , 2002, Methods.

[4]  M. Green,et al.  SAGA is an essential in vivo target of the yeast acidic activator Gal4p. , 2001, Genes & development.

[5]  F. Winston,et al.  The S. cerevisiae SAGA complex functions in vivo as a coactivator for transcriptional activation by Gal4. , 2001, Genes & development.

[6]  G. Crabtree,et al.  Cell signaling can direct either binary or graded transcriptional responses , 2001, The EMBO journal.

[7]  S. Safe,et al.  Transcriptional Activation of Deoxyribonucleic Acid Polymerase α Gene Expression in MCF-7 Cells by 17β-Estradiol. , 2001, Endocrinology.

[8]  J. Sambrook,et al.  Molecular Cloning: A Laboratory Manual , 2001 .

[9]  S. Safe,et al.  Transcriptional activation of transforming growth factor alpha by estradiol: requirement for both a GC-rich site and an estrogen response element half-site. , 2000, Journal of molecular endocrinology.

[10]  John Calvin Reed,et al.  Mechanisms of Transcriptional Activation of bcl-2Gene Expression by 17β-Estradiol in Breast Cancer Cells* , 1999, The Journal of Biological Chemistry.

[11]  S. Safe,et al.  Transcriptional activation of c-fos protooncogene by 17beta-estradiol: mechanism of aryl hydrocarbon receptor-mediated inhibition. , 1999, Molecular endocrinology.

[12]  Michael R. Green,et al.  Enhancement of TBP binding by activators and general transcription factors , 1999, Nature.

[13]  K. Struhl,et al.  Binding of TBP to promoters in vivo is stimulated by activators and requires Pol II holoenzyme , 1999, Nature.

[14]  J. V. Van Etten,et al.  Cloning, characterization and expression of the gene coding for a cytosine-5-DNA methyltransferase recognizing GpC. , 1998, Nucleic acids research.

[15]  M. Kladde,et al.  Gal4p-Mediated Chromatin Remodeling Depends on Binding Site Position in Nucleosomes but Does Not Require DNA Replication , 1998, Molecular and Cellular Biology.

[16]  M. Kladde,et al.  Direct study of DNA‐protein interactions in repressed and active chromatin in living cells. , 1996, The EMBO journal.

[17]  S. Clark,et al.  High sensitivity mapping of methylated cytosines. , 1994, Nucleic acids research.

[18]  L. Dorner,et al.  Direct selection of binding proficient/catalytic deficient variants of BamHI endonuclease. , 1994, Nucleic acids research.

[19]  S. Vashee,et al.  How do "Zn2 cys6" proteins distinguish between similar upstream activation sites? Comparison of the DNA-binding specificity of the GAL4 protein in vitro and in vivo. , 1993, The Journal of biological chemistry.

[20]  A. Wolffe,et al.  Influence of chromatin folding on transcription initiation and elongation by RNA polymerase III. , 1992, Biochemistry.

[21]  A. Razin,et al.  Cloning, characterization, and expression in Escherichia coli of the gene coding for the CpG DNA methylase from Spiroplasma sp. strain MQ1(M.SssI). , 1990, Nucleic acids research.

[22]  Jun Ma,et al.  A new class of yeast transcriptional activators , 1987, Cell.

[23]  G. Fasman,et al.  Biochemical and physiochemical characterization of chromatin fractions with different degrees of solubility isolated from chicken erythrocyte nuclei. , 1986, Biochemistry.

[24]  M. Ptashne,et al.  Specific DNA binding of GAL4, a positive regulatory protein of yeast , 1985, Cell.

[25]  D. Lohr,et al.  Yeast chromatin structure and regulation of GAL gene expression. , 2001, Progress in nucleic acid research and molecular biology.

[26]  D. Burton,et al.  "Use in a well ventilated area". , 2000, Occupational health & safety.

[27]  W. Schaffner,et al.  The CpG-specific methylase SssI has topoisomerase activity in the presence of Mg2+. , 1994, Nucleic acids research.

[28]  H. Hayatsu,et al.  Bisulfite modification of nucleic acids and their constituents. , 1976, Progress in nucleic acid research and molecular biology.