Ctf4 coordinates the progression of helicase and DNA polymerase α

Ctf4 is a protein conserved in eukaryotes and a constituent of the replisome progression complex. It also plays a role in the establishment of sister chromatid cohesion. In our current study, we demonstrate that the replication checkpoint is activated in the absence of Ctf4, and that the interaction between the MCM helicase‐go ichi ni san (GINS) complex and DNA polymerase α (Pol α)‐primase is destabilized specifically in a ctf4Δ mutant. An in vitro interaction between GINS and DNA Pol α was also found to be mediated by Ctf4. The same interaction was not affected in the absence of the replication checkpoint mediators Tof1 or Mrc1. In ctf4Δ cells, DNA pol α became significantly unstable and was barely detectable at the replication forks in HU. In contrast, the quantities of helicase and DNA pol ɛ bound to replication forks were almost unchanged but their localizations were widely and abnormally dispersed in the mutant cells compared with wild type. These results lead us to propose that Ctf4 is a key connector between DNA helicase and Pol α and is required for the coordinated progression of the replisome.

[1]  Anindya Dutta,et al.  Mcm10 and And-1/CTF4 recruit DNA polymerase α to chromatin for initiation of DNA replication , 2007 .

[2]  Katsuhiko Shirahige,et al.  Establishment of sister chromatid cohesion at the S. cerevisiae replication fork. , 2006, Molecular cell.

[3]  Hiroyuki Araki,et al.  GINS, a novel multiprotein complex required for chromosomal DNA replication in budding yeast. , 2003, Genes & development.

[4]  Masato T. Kanemaki,et al.  Molecular anatomy and regulation of a stable replisome at a paused eukaryotic DNA replication fork. , 2005, Genes & development.

[5]  Brian D. Peyser,et al.  S-phase checkpoint genes safeguard high-fidelity sister chromatid cohesion. , 2004, Molecular biology of the cell.

[6]  H. Shinagawa,et al.  Genetic and physical interactions between Schizosaccharomyces pombe Mcl1 and Rad2, Dna2 and DNA polymerase α: evidence for a multifunctional role of Mcl1 in DNA replication and repair , 2005, Current Genetics.

[7]  T. Formosa,et al.  POB3 is required for both transcription and replication in the yeast Saccharomyces cerevisiae. , 2000, Genetics.

[8]  A. Deutschbauer,et al.  Sister-chromatid cohesion mediated by the alternative RF-CCtf18/Dcc1/Ctf8, the helicase Chl1 and the polymerase-α-associated protein Ctf4 is essential for chromatid disjunction during meiosis II , 2004, Journal of Cell Science.

[9]  Gary D Bader,et al.  Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry , 2002, Nature.

[10]  Ricky D. Edmondson,et al.  GINS maintains association of Cdc45 with MCM in replisome progression complexes at eukaryotic DNA replication forks , 2006, Nature Cell Biology.

[11]  Y. Ishimi A DNA Helicase Activity Is Associated with an MCM4, -6, and -7 Protein Complex* , 1997, The Journal of Biological Chemistry.

[12]  C. Chien,et al.  Functional cooperation between FACT and MCM helicase facilitates initiation of chromatin DNA replication , 2006, The EMBO journal.

[13]  O. Aparicio,et al.  Mrc1 is required for normal progression of replication forks throughout chromatin in S. cerevisiae. , 2005, Molecular cell.

[14]  S. Elledge,et al.  The DNA damage response: putting checkpoints in perspective , 2000, Nature.

[15]  J. Diffley,et al.  A Mec1- and Rad53-dependent checkpoint controls late-firing origins of DNA replication , 1998, Nature.

[16]  R. Skibbens Chl1p, a DNA Helicase-Like Protein in Budding Yeast, Functions in Sister-Chromatid Cohesion , 2004, Genetics.

[17]  J. McIntosh,et al.  mcl1+, the Schizosaccharomyces pombe Homologue of CTF4, Is Important for Chromosome Replication, Cohesion, and Segregation , 2002, Eukaryotic Cell.

[18]  Grant W. Brown,et al.  Identification of protein complexes required for efficient sister chromatid cohesion. , 2004, Molecular biology of the cell.

[19]  M. Pacek,et al.  Localization of MCM2-7, Cdc45, and GINS to the site of DNA unwinding during eukaryotic DNA replication. , 2006, Molecular cell.

[20]  T. Toda,et al.  Fission yeast Mcl1 interacts with SCF(Pof3) and is required for centromere formation. , 2006, Biochemical and biophysical research communications.

[21]  Masato T. Kanemaki,et al.  Distinct roles for Sld3 and GINS during establishment and progression of eukaryotic DNA replication forks , 2006, The EMBO journal.

[22]  O. Aparicio,et al.  Components and Dynamics of DNA Replication Complexes in S. cerevisiae: Redistribution of MCM Proteins and Cdc45p during S Phase , 1997, Cell.

[23]  E. Foss Tof1p regulates DNA damage responses during S phase in Saccharomyces cerevisiae. , 2001, Genetics.

[24]  J. McIntosh,et al.  Mcl1p Is a Polymerase α Replication Accessory Factor Important for S-Phase DNA Damage Survival , 2005, Eukaryotic Cell.

[25]  F. Spencer,et al.  Saccharomyces cerevisiae CTF18 and CTF4 Are Required for Sister Chromatid Cohesion , 2001, Molecular and Cellular Biology.

[26]  Grant W. Brown,et al.  Functional dissection of protein complexes involved in yeast chromosome biology using a genetic interaction map , 2007, Nature.

[27]  P. Philippsen,et al.  Additional modules for versatile and economical PCR‐based gene deletion and modification in Saccharomyces cerevisiae , 1998, Yeast.

[28]  Nihon Hassei Seibutsu Gakkai,et al.  Genes to cells , 1996 .

[29]  Masato T. Kanemaki,et al.  Functional proteomic identification of DNA replication proteins by induced proteolysis in vivo , 2003, Nature.

[30]  M. Lei,et al.  Physical interactions among Mcm proteins and effects of Mcm dosage on DNA replication in Saccharomyces cerevisiae , 1996, Molecular and cellular biology.

[31]  Caroline M. Li,et al.  Saccharomyces cerevisiae DNA Polymerase ε and Polymerase σ Interact Physically and Functionally, Suggesting a Role for Polymerase ε in Sister Chromatid Cohesion , 2003, Molecular and Cellular Biology.

[32]  J. Bader,et al.  A DNA Integrity Network in the Yeast Saccharomyces cerevisiae , 2013, Cell.

[33]  T. Weinert DNA Damage and Checkpoint Pathways Molecular Anatomy and Interactions with Repair , 1998, Cell.

[34]  T. Formosa,et al.  POB 3 Is Required for Both Transcription and Replication in the Yeast Saccharomyces cerevisiae , 2000 .

[35]  M. Foiani,et al.  The Rad53 signal transduction pathway: Replication fork stabilization, DNA repair, and adaptation. , 2006, Experimental cell research.

[36]  Stephen J. Elledge,et al.  Mrc1 transduces signals of DNA replication stress to activate Rad53 , 2001, Nature Cell Biology.

[37]  J. Diffley,et al.  Uninterrupted MCM2-7 function required for DNA replication fork progression. , 2000, Science.

[38]  M. Botchan,et al.  Isolation of the Cdc45/Mcm2–7/GINS (CMG) complex, a candidate for the eukaryotic DNA replication fork helicase , 2006, Proceedings of the National Academy of Sciences.

[39]  T. Formosa,et al.  Protein affinity chromatography with purified yeast DNA polymerase alpha detects proteins that bind to DNA polymerase. , 1992, Proceedings of the National Academy of Sciences of the United States of America.

[40]  Katsuhiko Shirahige,et al.  S-phase checkpoint proteins Tof1 and Mrc1 form a stable replication-pausing complex , 2003, Nature.

[41]  P. Pasero,et al.  Mrc1 and Tof1 promote replication fork progression and recovery independently of Rad53. , 2005, Molecular cell.