Gene Set Based Integrated Methylome and Transcriptome Analysis Reveals Potential Molecular Mechanisms Linking Cigarette Smoking and Related Diseases
暂无分享,去创建一个
Pashupati P. Mishra | T. Lehtimäki | J. Viikari | N. Mononen | M. Kähönen | M. Juonala | N. Hutri-Kähönen | E. Raitoharju | O. Raitakari | Binisha H. Mishra
[1] Peng Kong,et al. Inflammation and atherosclerosis: signaling pathways and therapeutic intervention , 2022, Signal Transduction and Targeted Therapy.
[2] Yanlong Liu,et al. Association of Cigarette Smoking With Male Cognitive Impairment and Metal Ions in Cerebrospinal Fluid , 2021, Frontiers in Psychiatry.
[3] Pashupati P. Mishra,et al. Methylation status of nc886 epiallele reflects periconceptional conditions and is associated with glucose metabolism through nc886 RNAs , 2021, Clinical epigenetics.
[4] Xiaochen Bo,et al. clusterProfiler 4.0: A universal enrichment tool for interpreting omics data , 2021, Innovation.
[5] Pashupati P. Mishra,et al. Modular genome-wide gene expression architecture shared by early traits of osteoporosis and atherosclerosis in the Young Finns Study , 2021, Scientific Reports.
[6] P. Tsai,et al. Novel DNA methylation signatures of tobacco smoking with trans-ethnic effects , 2021, Clinical epigenetics.
[7] Anushya Muruganujan,et al. The Gene Ontology resource: enriching a GOld mine , 2020, Nucleic Acids Res..
[8] Sonja Kunze,et al. Smoking-related changes in DNA methylation and gene expression are associated with cardio-metabolic traits , 2020, Clinical epigenetics.
[9] A. Imhof,et al. Corrigendum: Epigenetics and Metabolism in Health and Disease , 2020, Frontiers in Genetics.
[10] J. Araya,et al. Cohort Profile. , 2020, International journal of epidemiology.
[11] S. Batra,et al. A systematic review of smoking-related epigenetic alterations , 2019, Archives of Toxicology.
[12] C. Breeze,et al. Tobacco smoking induces changes in true DNA methylation, hydroxymethylation and gene expression in bronchoalveolar lavage cells , 2019, EBioMedicine.
[13] K. Ley,et al. Immunity and Inflammation in Atherosclerosis , 2019, Circulation research.
[14] A. Imhof,et al. Epigenetics and Metabolism in Health and Disease , 2018, Front. Genet..
[15] P. Tsai,et al. Smoking induces coordinated DNA methylation and gene expression changes in adipose tissue with consequences for metabolic health , 2018, Clinical Epigenetics.
[16] Brian D. Bennett,et al. Identification of Smoking-Associated Differentially Methylated Regions Using Reduced Representation Bisulfite Sequencing and Cell type–Specific Enhancer Activation and Gene Expression , 2018, Environmental health perspectives.
[17] Jean-Philippe Fortin,et al. Preprocessing, normalization and integration of the Illumina HumanMethylationEPIC array with minfi , 2016, bioRxiv.
[18] Hong Peng,et al. Are healthy smokers really healthy? , 2016, Tobacco induced diseases.
[19] Timothy J. Peters,et al. Critical evaluation of the Illumina MethylationEPIC BeadChip microarray for whole-genome DNA methylation profiling , 2016, Genome Biology.
[20] R. Marioni,et al. Epigenetic Signatures of Cigarette Smoking , 2016, Circulation. Cardiovascular genetics.
[21] M. Peters,et al. A whole-blood transcriptome meta-analysis identifies gene expression signatures of cigarette smoking. , 2016, Human molecular genetics.
[22] A. McIntosh,et al. Identification of polymorphic and off-target probe binding sites on the Illumina Infinium MethylationEPIC BeadChip , 2016, bioRxiv.
[23] B. Penninx,et al. Differential gene expression patterns between smokers and non‐smokers: cause or consequence? , 2015, Addiction biology.
[24] P. Elliott,et al. A coherent approach for analysis of the Illumina HumanMethylation450 BeadChip improves data quality and performance in epigenome-wide association studies , 2015, Genome Biology.
[25] I. Deary,et al. Cigarette smoking and thinning of the brain's cortex , 2015, Molecular Psychiatry.
[26] Jason M. Meyer,et al. Minimally oxidized LDL inhibits macrophage selective cholesteryl ester uptake and native LDL-induced foam cell formation[S] , 2014, Journal of Lipid Research.
[27] Rafael A. Irizarry,et al. Minfi: a flexible and comprehensive Bioconductor package for the analysis of Infinium DNA methylation microarrays , 2014, Bioinform..
[28] Teemu Koivistoinen,et al. Association of Physical Activity in Childhood and Early Adulthood With Carotid Artery Elasticity 21 Years Later: The Cardiovascular Risk in Young Finns Study , 2014, Journal of the American Heart Association.
[29] J. Bilezikian,et al. New Clues that May Link Osteoporosis to the Circulating Lipid Profile , 2013, Bone Research.
[30] Zdenka Pausova,et al. Cigarette smoking and DNA methylation , 2013, Front. Genet..
[31] Christian Gieger,et al. Tobacco Smoking Leads to Extensive Genome-Wide Changes in DNA Methylation , 2013, PloS one.
[32] P. Laird,et al. Low-level processing of Illumina Infinium DNA Methylation BeadArrays , 2013, Nucleic acids research.
[33] D. Bernhard,et al. Apoptosis and necrosis: two different outcomes of cigarette smoke condensate-induced endothelial cell death , 2012, Cell Death and Disease.
[34] Devin C. Koestler,et al. DNA methylation arrays as surrogate measures of cell mixture distribution , 2012, BMC Bioinformatics.
[35] Guangchuang Yu,et al. clusterProfiler: an R package for comparing biological themes among gene clusters. , 2012, Omics : a journal of integrative biology.
[36] N. Maalouf,et al. The effects of smoking on bone metabolism , 2012, Osteoporosis International.
[37] E. Mohammadi,et al. Barriers and facilitators related to the implementation of a physiological track and trigger system: A systematic review of the qualitative evidence , 2017, International journal for quality in health care : journal of the International Society for Quality in Health Care.
[38] Matko Bosnjak,et al. REVIGO Summarizes and Visualizes Long Lists of Gene Ontology Terms , 2011, PloS one.
[39] L. Almasy,et al. Open Access Research Article Transcriptomic Epidemiology of Smoking: the Effect of Smoking on Gene Expression in Lymphocytes , 2022 .
[40] Di Wu,et al. ROAST: rotation gene set tests for complex microarray experiments , 2010, Bioinform..
[41] L. M. Hultén,et al. The role of hypoxia in atherosclerosis , 2009, Current opinion in lipidology.
[42] T. Laitinen,et al. Alcohol consumption is directly associated with carotid intima-media thickness in Finnish young adults: the Cardiovascular Risk in Young Finns Study. , 2009, Atherosclerosis.
[43] Risto Telama,et al. Cohort profile: the cardiovascular risk in Young Finns Study. , 2008, International journal of epidemiology.
[44] Michael C. Fiore,et al. A Clinical Practice Guideline for Treating Tobacco Use and Dependence A US Public Health Service Report , 2000 .
[45] M. Ashburner,et al. Gene Ontology: tool for the unification of biology , 2000, Nature Genetics.
[46] J. Gofman,et al. Lipoproteins in atherosclerosis. , 1951, The American journal of medicine.
[47] J. Hewitt,et al. The role of lipids and lipoproteins in atherosclerosis. , 1950, Science.
[48] Pascale Gaudet,et al. The Gene Ontology , 2019, Encyclopedia of Bioinformatics and Computational Biology.
[49] A. Bergen,et al. Cigarette smoking. , 1999, Journal of the National Cancer Institute.
[50] J. Sifontes. [The effects of smoking]. , 1979, Boletin de la Asociacion Medica de Puerto Rico.