A Sequence Homology and Bioinformatic Approach Can Predict Candidate Targets for Immune Responses to SARS-CoV-2
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[1] B. Graham,et al. Cryo-EM structure of the 2019-nCoV spike in the prefusion conformation , 2020, Science.
[2] P. Niu,et al. Genome Composition and Divergence of the Novel Coronavirus (2019-nCoV) Originating in China , 2020, Cell Host & Microbe.
[3] A. Sette,et al. Human T Cell Response to Dengue Virus Infection , 2019, Front. Immunol..
[4] Morten Nielsen,et al. IEDB-AR: immune epitope database—analysis resource in 2019 , 2019, Nucleic Acids Res..
[5] Chuan Qin,et al. From SARS to MERS, Thrusting Coronaviruses into the Spotlight , 2019, Viruses.
[6] Alessandro Sette,et al. The Immune Epitope Database (IEDB): 2018 update , 2018, Nucleic Acids Res..
[7] P. J. Norris,et al. Cutting Edge: Transcriptional Profiling Reveals Multifunctional and Cytotoxic Antiviral Responses of Zika Virus–Specific CD8+ T Cells , 2018, The Journal of Immunology.
[8] Alessandro Sette,et al. ImmunomeBrowser: a tool to aggregate and visualize complex and heterogeneous epitopes in reference proteins , 2018, Bioinform..
[9] S. Mallal,et al. Correction: Definition of Human Epitopes Recognized in Tetanus Toxoid and Development of an Assay Strategy to Detect Ex Vivo Tetanus CD4+ T Cell Responses , 2017, PloS one.
[10] M. Nielsen,et al. NetMHCpan-4.0: Improved Peptide–MHC Class I Interaction Predictions Integrating Eluted Ligand and Peptide Binding Affinity Data , 2017, The Journal of Immunology.
[11] S. Mallal,et al. Global Assessment of Dengue Virus-Specific CD4+ T Cell Responses in Dengue-Endemic Areas , 2017, Front. Immunol..
[12] Bjoern Peters,et al. BepiPred-2.0: improving sequence-based B-cell epitope prediction using conformational epitopes , 2017, Nucleic Acids Res..
[13] Bjoern Peters,et al. TepiTool: A Pipeline for Computational Prediction of T Cell Epitope Candidates , 2016, Current protocols in immunology.
[14] D. Falzarano,et al. SARS and MERS: recent insights into emerging coronaviruses , 2016, Nature Reviews Microbiology.
[15] Jing Xie,et al. Immunodominant SARS Coronavirus Epitopes in Humans Elicited both Enhancing and Neutralizing Effects on Infection in Non-human Primates , 2016, ACS infectious diseases.
[16] Bjoern Peters,et al. Automatic Generation of Validated Specific Epitope Sets , 2015, Journal of immunology research.
[17] Mark M. Davis,et al. A Population Response Analysis Approach To Assign Class II HLA-Epitope Restrictions , 2015, The Journal of Immunology.
[18] John Sidney,et al. Development and validation of a broad scheme for prediction of HLA class II restricted T cell epitopes , 2014, BCB.
[19] Gert Vriend,et al. YASARA View—molecular graphics for all devices—from smartphones to workstations , 2014, Bioinform..
[20] Bjoern Peters,et al. HLA Class I Alleles Are Associated with Peptide-Binding Repertoires of Different Size, Affinity, and Immunogenicity , 2013, The Journal of Immunology.
[21] Ravi V. Kolla,et al. Comprehensive analysis of dengue virus-specific responses supports an HLA-linked protective role for CD8+ T cells , 2013, Proceedings of the National Academy of Sciences.
[22] Morten Nielsen,et al. Reliable B Cell Epitope Predictions: Impacts of Method Development and Improved Benchmarking , 2012, PLoS Comput. Biol..
[23] Yun Zhang,et al. ViPR: an open bioinformatics database and analysis resource for virology research , 2011, Nucleic Acids Res..
[24] M. Taneichi,et al. Efficient induction of cytotoxic T lymphocytes specific for severe acute respiratory syndrome (SARS)-associated coronavirus by immunization with surface-linked liposomal peptides derived from a non-structural polyprotein 1a , 2009, Antiviral Research.
[25] Junbao Yang,et al. Searching immunodominant epitopes prior to epidemic: HLA class II-restricted SARS-CoV spike protein epitopes in unexposed individuals , 2008, International immunology.
[26] S. Cheng,et al. Investigation of immunogenic T-cell epitopes in SARS virus nucleocapsid protein and their role in the prevention and treatment of SARS infection. , 2008, Hong Kong medical journal = Xianggang yi xue za zhi.
[27] Magdalini Moutaftsi,et al. Selective CD4+ T cell help for antibody responses to a large viral pathogen: deterministic linkage of specificities. , 2008, Immunity.
[28] Qing Zhang,et al. Immune epitope database analysis resource (IEDB-AR) , 2008, Nucleic Acids Res..
[29] Bjoern Peters,et al. HLA class I supertypes: a revised and updated classification , 2008, BMC Immunology.
[30] Y. Cheung,et al. Induction of T-cell response by a DNA vaccine encoding a novel HLA-A*0201 severe acute respiratory syndrome coronavirus epitope , 2007, Vaccine.
[31] J. Jan,et al. HLA-A∗0201 T-cell epitopes in severe acute respiratory syndrome (SARS) coronavirus nucleocapsid and spike proteins , 2006, Biochemical and Biophysical Research Communications.
[32] Chi-Ju Chen,et al. Immunological characterizations of the nucleocapsid protein based SARS vaccine candidates , 2006, Vaccine.
[33] P. Chan,et al. Specific epitopes of the structural and hypothetical proteins elicit variable humoral responses in SARS patients , 2006, Journal of Clinical Pathology.
[34] Hongbo Hu,et al. Screening and identification of linear B-cell epitopes and entry-blocking peptide of severe acute respiratory syndrome (SARS)-associated coronavirus using synthetic overlapping peptide library. , 2005, Journal of combinatorial chemistry.
[35] M. Sata,et al. Assessment of synthetic peptides of severe acute respiratory syndrome coronavirus recognized by long‐lasting immunity , 2004, Tissue antigens.
[36] P. Mcgeer,et al. SARS corona virus peptides recognized by antibodies in the sera of convalescent cases , 2004, Virology.
[37] Huanming Yang,et al. Assessment of Immunoreactive Synthetic Peptides from the Structural Proteins of Severe Acute Respiratory Syndrome Coronavirus , 2003, Clinical chemistry.
[38] Derek Middleton,et al. New allele frequency database: www.allelefrequencies.net , 2003 .
[39] D Middleton,et al. New allele frequency database: http://www.allelefrequencies.net. , 2003, Tissue antigens.