Streptomyces Phospholipase D Mutants with Altered Substrate Specificity Capable of Phosphatidylinositol Synthesis

The substrate specificity of a phospholipase D (PLD) from Streptomyces antibioticus was altered by site‐directed saturation mutagenesis, so that it was able to synthesize phosphatidylinositol (PI). Mutations were introduced in the pld gene at the positions corresponding to three amino acid residues that might be involved in substrate recognition, and the mutated genes were expressed in Escherichia coli BL21 (DE3). High‐throughput screening of approximately 10 000 colonies for PI‐synthesizing activity identified 25 PI‐synthesizing mutant PLDs. One of these mutant enzymes was chosen for further analysis. The structure of the PI synthesized with the mutant enzyme was analyzed by HPLC‐MS and NMR. It was found that the mutant enzyme generated a mixture of structural isomers of PIs with the phosphatidyl groups connected at different positions of the inositol ring. The phosphatidylcholine‐hydrolyzing activity of the mutant PLD was much lower than that of the wild‐type enzyme. The mutant enzyme was able to transphosphatidylate various cyclohexanols with a preference for bulkier compounds. This is the first example of alteration of the substrate specificity of PLD and of PI synthesis by Streptomyces PLD.

[1]  G. H. Simpson,et al.  Solid-state compounds of stereoisomers: cis and trans isomers of 1,2-cyclohexanediol and 2,3-tetralindiol. , 2007, Acta crystallographica. Section B, Structural science.

[2]  A. Kondo,et al.  Remarkable enhancement in PLD activity from Streptoverticillium cinnamoneum by substituting serine residue into the GG/GS motif. , 2007, Biochimica et biophysica acta.

[3]  T. Hatanaka,et al.  C‐terminal loop of Streptomyces phospholipase D has multiple functional roles , 2006, Protein science : a publication of the Protein Society.

[4]  Manfred T Reetz,et al.  Designing new Baeyer-Villiger monooxygenases using restricted CASTing. , 2006, The Journal of organic chemistry.

[5]  Andreas Vogel,et al.  Expanding the substrate scope of enzymes: combining mutations obtained by CASTing. , 2006, Chemistry.

[6]  Manfred T Reetz,et al.  Directed evolution of enantioselective enzymes: iterative cycles of CASTing for probing protein-sequence space. , 2006, Angewandte Chemie.

[7]  H. Lester,et al.  A cation-pi binding interaction with a tyrosine in the binding site of the GABAC receptor. , 2005, Chemistry & biology.

[8]  Takeshi Kobayashi,et al.  Novel strategy for protein exploration: high-throughput screening assisted with fuzzy neural network. , 2005, Journal of molecular biology.

[9]  Andreas Vogel,et al.  Expanding the range of substrate acceptance of enzymes: combinatorial active-site saturation test. , 2005, Angewandte Chemie.

[10]  J. Camp,et al.  Analysis of phospho- and sphingolipids in dairy products by a new HPLC method. , 2005, Journal of dairy science.

[11]  J. Burgess,et al.  Phosphatidylinositol increases HDL-C levels in humans Published, JLR Papers in Press, December 1, 2004. DOI 10.1194/jlr.M400438-JLR200 , 2005, Journal of Lipid Research.

[12]  R. Ulbrich-hofmann,et al.  Head group specificity of phospholipase D isoenzymes from poppy seedlings (Papaver somniferum L.) , 2005, Biotechnology Letters.

[13]  A. Laederach,et al.  Visualizing complexes of phospholipids with Streptomyces phospholipase D by automated docking , 2004, Proteins.

[14]  Sean McSweeney,et al.  The reaction mechanism of phospholipase D from Streptomyces sp. strain PMF. Snapshots along the reaction pathway reveal a pentacoordinate reaction intermediate and an unexpected final product. , 2004, Journal of molecular biology.

[15]  T. Yamane,et al.  Detection of phospholipase D on solid materials. , 2004, Analytical biochemistry.

[16]  Hideo Nakano,et al.  Inverting enantioselectivity of Burkholderia cepacia KWI-56 lipase by combinatorial mutation and high-throughput screening using single-molecule PCR and in vitro expression. , 2003, Journal of molecular biology.

[17]  J. Burgess,et al.  Phosphatidylinositol promotes cholesterol transport and excretion Published, JLR Papers in Press, April 16, 2003. DOI 10.1194/jlr.M300062-JLR200 , 2003, Journal of Lipid Research.

[18]  U. Bornscheuer,et al.  A high-throughput-screening method for determining the synthetic activity of hydrolases. , 2003, Angewandte Chemie.

[19]  U. Bornscheuer,et al.  Eine Hochdurchsatz-Screeningmethode zur Bestimmung der Syntheseaktivität von Hydrolasen† , 2003 .

[20]  Dennis A Dougherty,et al.  Cation-pi interactions in ligand recognition and catalysis. , 2002, Trends in pharmacological sciences.

[21]  S. Nakanishi,et al.  Structural basis of glutamate recognition by a dimeric metabotropic glutamate receptor , 2000, Nature.

[22]  D. Breznan,et al.  Phosphatidylinositol promotes cholesterol transport in vivo. , 2000, Journal of lipid research.

[23]  I. Leiros,et al.  The first crystal structure of a phospholipase D. , 2000, Structure.

[24]  S. Angyal myo-Inositol 4,6-carbonate: an easily prepared small molecule with three syn-axial hydroxyl groups. , 2000, Carbohydrate research.

[25]  P. Hergenrother,et al.  The choline binding site of phospholipase C (Bacillus cereus): insights into substrate specificity. , 2000, Biochemistry.

[26]  R. Aneja,et al.  Practical unequivocal synthesis of phosphatidyl-myo-inositols , 2000 .

[27]  E. Hulme,et al.  Alanine-scanning mutagenesis of transmembrane domain 6 of the M(1) muscarinic acetylcholine receptor suggests that Tyr381 plays key roles in receptor function. , 1999, Molecular pharmacology.

[28]  T. Yamane,et al.  Location of the catalytic nucleophile of phospholipase D of Streptomyces antibioticus in the C-terminal half domain. , 1999, European journal of biochemistry.

[29]  R. Ulbrich-hofmann,et al.  Hexadecylphosphocholine and 2-modified 1,3-diacylglycerols as effectors of phospholipase D. , 1998, Biochimica et biophysica acta.

[30]  S. Servi,et al.  Using phospholipases for phospholipid modification , 1997 .

[31]  N. Scrutton,et al.  Selective modification of alkylammonium ion specificity in trimethylamine dehydrogenase by the rational engineering of cation-pi bonding. , 1997, Biochemistry.

[32]  S. Shimizu,et al.  Enzymatic Synthesis of Phosphatidylinositol Bearing Polyunsaturated Acyl Group , 1996 .

[33]  A. M. Riley,et al.  6-Deoxy-6-hydroxymethyl scyllo-inositol 1,2,4-trisphosphate: A potent agonist at the inositol 1,4,5-trisphosphate receptor , 1996 .

[34]  D. A. Dougherty,et al.  Cation-π Interactions in Chemistry and Biology: A New View of Benzene, Phe, Tyr, and Trp , 1996, Science.

[35]  T. Yamane,et al.  Phospholipase D fromStreptomyces antibioticus: Cloning, sequencing, expression, and relationship to other phospholipases , 1994, Applied Microbiology and Biotechnology.

[36]  J. Weihrauch,et al.  Phospholipid content of foods , 1983 .

[37]  S. Benkovic,et al.  Combinatorial manipulation of three key active site residues in glycinamide ribonucleotide transformylase. , 1997, Protein engineering.

[38]  T. Yamane,et al.  Insertion of Stabilizing Loci in Vectors of T7 RNA Polymerase‐Mediated Escherichia coli Expression Systems: A Case Study on the Plasmids Involving Foreign Phospholipase D Gene , 1997, Biotechnology progress.

[39]  T. Yamane,et al.  Extracellular production of phospholipase D of Streptomyces antibioticus using recombinant Escherichia coli , 1995 .

[40]  S. Servi,et al.  Phospholipase D from Streptomyces catalyses the transfer of secondary alcohols , 1994 .

[41]  J. Huff,et al.  The total synthesis of myo-inositol polyphosphates , 1989 .

[42]  P. Sen,et al.  In vitro synthesis of phosphatidylinositol and phosphatidylcholine by phospholipase D , 1980 .

[43]  J. Dittmer,et al.  A SIMPLE, SPECIFIC SPRAY FOR THE DETECTION OF PHOSPHOLIPIDS ON THIN-LAYER CHROMATOGRAMS. , 1964, Journal of lipid research.